Gcaud2039.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2039.t1
Unique NameGcaud2039.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Homology
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BLAST of Gcaud2039.t1 vs. uniprot
Match: A0A2V3IU14_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU14_9FLOR)

HSP 1 Score: 189 bits (480), Expect = 1.130e-58
Identity = 94/148 (63.51%), Postives = 114/148 (77.03%), Query Frame = 0 
Query:    7 TFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVLSRRI 154
            TFW+P+   +VLED RVQK A+  D  LD+L E HGIQCES+ + +VSSLAIAGYGRV DSQ+LS+L +LT+ WMR+EA+ ISWE IWP KH LVE+ LG D +EVA+ VLSAYATFCVREK+ DAAR+KR N  G  N L V S R+
Sbjct:   30 TFWVPKVATKVLEDSRVQKAAIAGDYWLDLLFEHHGIQCESIHEFSVSSLAIAGYGRVDDSQNLSTLTELTEEWMRQEARAISWEEIWPKKHLLVEKWLGGDDKEVALGVLSAYATFCVREKLCDAARMKRRNNPGAVNGLHVFSTRM 177
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BLAST of Gcaud2039.t1 vs. uniprot
Match: A0A2V3IIL4_9FLOR (DRBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIL4_9FLOR)

HSP 1 Score: 176 bits (445), Expect = 5.490e-48
Identity = 84/153 (54.90%), Postives = 112/153 (73.20%), Query Frame = 0 
Query:    6 DTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLVEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVLSRRIVEVG 158
            +TFW+P+ VA  LED RV+K AL CD+GLD L E HGIQ + VQD+A++S+AIAG GR    +  SSLR LTKYWMR+E K I+W+ +WP +  L +  LG D +E+A AVLSA+A  CVR K+ DAAR+KR+N  G +NDL VL +R+++ G
Sbjct:  903 NTFWVPDIVADTLEDARVEKAALACDEGLDELFERHGIQADGVQDVALTSIAIAGLGRFDGRRQFSSLRQLTKYWMRQEVKDINWQTLWPKRSELPKALLGTDAKELAAAVLSAFAVRCVRVKLSDAARMKRVNMGGASNDLVVLCKRVLDSG 1055
[Close]
BLAST of Gcaud2039.t1 vs. uniprot
Match: A0A2V3J3V8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3V8_9FLOR)

HSP 1 Score: 138 bits (347), Expect = 3.390e-39
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 0 
Query:    1 LDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQDIAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTLV 101
            LD   D FW+PE  A+VLED RVQK A+   D  D+L E HGIQCES+ D++VSSLA+AGYGRV DSQ+LS+  +LT+YWMRKEA+ ISWE IWP KH LV
Sbjct:   24 LDHVQDKFWVPEVAAKVLEDSRVQKAAIAGVDWFDLLFEHHGIQCESIHDVSVSSLAVAGYGRVGDSQNLSNSTELTEYWMRKEARAISWEEIWPKKHLLV 124
The following BLAST results are available for this feature:
BLAST of Gcaud2039.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IU14_9FLOR1.130e-5863.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IIL4_9FLOR5.490e-4854.90DRBM domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3J3V8_9FLOR3.390e-3964.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..132
e-value: 4.0E-6
score: 28.4
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 9..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1239_length_12250_cov_4.291307contigNODE_1239_length_12250_cov_4.291307:3696..4178 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t1Gcaud2039.t1Gracilaria caudata M_176_S67 malemRNANODE_1239_length_12250_cov_4.291307 3696..4178 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2039.t1 ID=Gcaud2039.t1|Name=Gcaud2039.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
LDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQD
IAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTL
VEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVL
SRRIVEVGAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf