Gcaud7872.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7872.t1
Unique Name	Gcaud7872.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1238_length_12255_cov_4.374630	contig	NODE_1238_length_12255_cov_4.374630:9583..10860 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707041.1
PFAMs	Chorismate_synt
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00586
KEGG ko	ko:K01736
KEGG Reaction	R01714
KEGG Pathway	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG Module	M00022
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	1.99e-204
EggNOG OGs	COG0082@1\|root,KOG4492@2759\|Eukaryota
EC	4.2.3.5
Description	chorismate synthase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7872	Gcaud7872	Gracilaria caudata M_176_S67 male	gene	NODE_1238_length_12255_cov_4.374630 9583..10860 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7872.t1.start1	Gcaud7872.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1238_length_12255_cov_4.374630 9583..9585 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7872.t1.CDS1	Gcaud7872.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1238_length_12255_cov_4.374630 9583..10860 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7872.t1.exon1	Gcaud7872.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1238_length_12255_cov_4.374630 9583..10860 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7872.t1.stop1	Gcaud7872.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1238_length_12255_cov_4.374630 10858..10860 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7872.t1	Gcaud7872.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1238_length_12255_cov_4.374630 9583..10860 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+
coding sequence from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+

mRNA sequence

>Gcaud7872.t1 ID=Gcaud7872.t1|Name=Gcaud7872.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp
MAAFIHLSPTESAFFGSSAQTYNAAIQPRRPRGARMGLGNSFGRIFRIST
WGESHGGGVGVTVDGCPPRLPLHRDEIQRDLDRRRPGQSRIVTPRNEPDA
VEILSGVVDGTTIGTPIAMLVRNKDQRSQDYDTMAVAYRPSHADAAYDAK
YGIRAVAGGGRSSARETIGRVAAGAIARKILKMYAGVDVVGYVKRVRDIE
APPIDPNRVTLEQVDANIIRCPDPAAAEKMIAYVDQIRKSGNSVGGVVEV
VARNVPAGLGSPVFDKLEAELAKACMSLPASKGFEIGSGFEGTMLTGIEH
NDEFYIDDDGRTRTATNRSGGIQGGISNGEPIVIRVAFKPTSTIGRIQKT
VTRGGEETELRGKGRHDPCVLPRAVPMVESMVALVLADHLMQQIAQNSIT
PIREEDAPNPLGPKPVSDAVTMNIG*

spliced messenger RNA

>Gcaud7872.t1 ID=Gcaud7872.t1|Name=Gcaud7872.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCATTCATTCATCTCTCACCTACAGAGAGCGCATTTTTTGGGAG
TTCAGCTCAGACTTACAATGCAGCTATCCAGCCAAGACGTCCCCGGGGTG
CCAGAATGGGGTTAGGAAATTCCTTTGGTCGCATCTTCAGAATCAGCACG
TGGGGCGAAAGCCACGGAGGAGGTGTTGGTGTCACTGTCGACGGCTGTCC
CCCCAGACTTCCACTACATCGCGACGAGATTCAGCGCGATCTGGATCGTC
GCCGTCCCGGGCAGAGTCGTATTGTCACCCCAAGAAACGAACCTGACGCT
GTGGAAATTCTGTCTGGAGTAGTTGATGGGACCACGATAGGCACGCCTAT
TGCAATGCTTGTTCGCAATAAGGATCAACGCAGCCAGGACTACGACACTA
TGGCTGTTGCGTACCGTCCGTCACATGCCGATGCAGCCTACGACGCAAAG
TACGGCATTCGAGCTGTTGCTGGTGGCGGTCGGTCTTCAGCTCGAGAAAC
GATTGGCCGCGTGGCGGCTGGCGCCATTGCACGAAAGATTCTGAAGATGT
ATGCGGGTGTGGACGTAGTCGGTTACGTCAAGCGTGTTCGTGATATTGAA
GCCCCTCCAATTGACCCGAACCGCGTCACCTTGGAACAAGTGGATGCAAA
CATTATCCGTTGTCCCGATCCAGCGGCGGCAGAGAAGATGATTGCATATG
TTGATCAGATTCGCAAGTCTGGAAATAGTGTCGGAGGAGTGGTTGAGGTG
GTGGCAAGGAACGTTCCTGCCGGTTTGGGATCTCCTGTTTTCGATAAGCT
TGAAGCGGAACTCGCGAAAGCCTGTATGAGCCTGCCGGCCTCGAAAGGTT
TTGAAATTGGCAGCGGTTTTGAGGGAACAATGCTCACAGGTATCGAGCAT
AACGACGAGTTTTACATTGACGACGACGGAAGAACAAGAACAGCCACAAA
TCGTAGTGGAGGTATACAAGGTGGAATAAGTAATGGTGAACCCATCGTAA
TCAGAGTGGCATTTAAGCCTACAAGTACCATAGGGAGAATTCAGAAGACA
GTCACGCGTGGTGGAGAGGAAACAGAACTCAGAGGAAAAGGAAGACATGA
TCCGTGCGTGCTGCCAAGGGCAGTGCCAATGGTCGAATCGATGGTAGCTC
TAGTTCTGGCGGATCACCTTATGCAACAGATTGCACAGAACAGCATAACA
CCGATTCGCGAAGAAGATGCACCGAACCCACTCGGACCTAAACCTGTCTC
TGACGCAGTGACTATGAACATCGGCTGA

protein sequence of Gcaud7872.t1

>Gcaud7872.t1 ID=Gcaud7872.t1|Name=Gcaud7872.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=426bp
MAAFIHLSPTESAFFGSSAQTYNAAIQPRRPRGARMGLGNSFGRIFRIST
WGESHGGGVGVTVDGCPPRLPLHRDEIQRDLDRRRPGQSRIVTPRNEPDA
VEILSGVVDGTTIGTPIAMLVRNKDQRSQDYDTMAVAYRPSHADAAYDAK
YGIRAVAGGGRSSARETIGRVAAGAIARKILKMYAGVDVVGYVKRVRDIE
APPIDPNRVTLEQVDANIIRCPDPAAAEKMIAYVDQIRKSGNSVGGVVEV
VARNVPAGLGSPVFDKLEAELAKACMSLPASKGFEIGSGFEGTMLTGIEH
NDEFYIDDDGRTRTATNRSGGIQGGISNGEPIVIRVAFKPTSTIGRIQKT
VTRGGEETELRGKGRHDPCVLPRAVPMVESMVALVLADHLMQQIAQNSIT
PIREEDAPNPLGPKPVSDAVTMNIG*

mRNA from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7872.t1 ID=Gcaud7872.t1|Name=Gcaud7872.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+ (Gracilaria caudata M_176_S67 male)
ATGGCAGCATTCATTCATCTCTCACCTACAGAGAGCGCATTTTTTGGGAG
TTCAGCTCAGACTTACAATGCAGCTATCCAGCCAAGACGTCCCCGGGGTG
CCAGAATGGGGTTAGGAAATTCCTTTGGTCGCATCTTCAGAATCAGCACG
TGGGGCGAAAGCCACGGAGGAGGTGTTGGTGTCACTGTCGACGGCTGTCC
CCCCAGACTTCCACTACATCGCGACGAGATTCAGCGCGATCTGGATCGTC
GCCGTCCCGGGCAGAGTCGTATTGTCACCCCAAGAAACGAACCTGACGCT
GTGGAAATTCTGTCTGGAGTAGTTGATGGGACCACGATAGGCACGCCTAT
TGCAATGCTTGTTCGCAATAAGGATCAACGCAGCCAGGACTACGACACTA
TGGCTGTTGCGTACCGTCCGTCACATGCCGATGCAGCCTACGACGCAAAG
TACGGCATTCGAGCTGTTGCTGGTGGCGGTCGGTCTTCAGCTCGAGAAAC
GATTGGCCGCGTGGCGGCTGGCGCCATTGCACGAAAGATTCTGAAGATGT
ATGCGGGTGTGGACGTAGTCGGTTACGTCAAGCGTGTTCGTGATATTGAA
GCCCCTCCAATTGACCCGAACCGCGTCACCTTGGAACAAGTGGATGCAAA
CATTATCCGTTGTCCCGATCCAGCGGCGGCAGAGAAGATGATTGCATATG
TTGATCAGATTCGCAAGTCTGGAAATAGTGTCGGAGGAGTGGTTGAGGTG
GTGGCAAGGAACGTTCCTGCCGGTTTGGGATCTCCTGTTTTCGATAAGCT
TGAAGCGGAACTCGCGAAAGCCTGTATGAGCCTGCCGGCCTCGAAAGGTT
TTGAAATTGGCAGCGGTTTTGAGGGAACAATGCTCACAGGTATCGAGCAT
AACGACGAGTTTTACATTGACGACGACGGAAGAACAAGAACAGCCACAAA
TCGTAGTGGAGGTATACAAGGTGGAATAAGTAATGGTGAACCCATCGTAA
TCAGAGTGGCATTTAAGCCTACAAGTACCATAGGGAGAATTCAGAAGACA
GTCACGCGTGGTGGAGAGGAAACAGAACTCAGAGGAAAAGGAAGACATGA
TCCGTGCGTGCTGCCAAGGGCAGTGCCAATGGTCGAATCGATGGTAGCTC
TAGTTCTGGCGGATCACCTTATGCAACAGATTGCACAGAACAGCATAACA
CCGATTCGCGAAGAAGATGCACCGAACCCACTCGGACCTAAACCTGTCTC
TGACGCAGTGACTATGAACATCGGCTGA

Coding sequence (CDS) from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+

>Gcaud7872.t1 ID=Gcaud7872.t1|Name=Gcaud7872.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1278bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:9583..10860+ (Gracilaria caudata M_176_S67 male)
ATGGCAGCATTCATTCATCTCTCACCTACAGAGAGCGCATTTTTTGGGAG
TTCAGCTCAGACTTACAATGCAGCTATCCAGCCAAGACGTCCCCGGGGTG
CCAGAATGGGGTTAGGAAATTCCTTTGGTCGCATCTTCAGAATCAGCACG
TGGGGCGAAAGCCACGGAGGAGGTGTTGGTGTCACTGTCGACGGCTGTCC
CCCCAGACTTCCACTACATCGCGACGAGATTCAGCGCGATCTGGATCGTC
GCCGTCCCGGGCAGAGTCGTATTGTCACCCCAAGAAACGAACCTGACGCT
GTGGAAATTCTGTCTGGAGTAGTTGATGGGACCACGATAGGCACGCCTAT
TGCAATGCTTGTTCGCAATAAGGATCAACGCAGCCAGGACTACGACACTA
TGGCTGTTGCGTACCGTCCGTCACATGCCGATGCAGCCTACGACGCAAAG
TACGGCATTCGAGCTGTTGCTGGTGGCGGTCGGTCTTCAGCTCGAGAAAC
GATTGGCCGCGTGGCGGCTGGCGCCATTGCACGAAAGATTCTGAAGATGT
ATGCGGGTGTGGACGTAGTCGGTTACGTCAAGCGTGTTCGTGATATTGAA
GCCCCTCCAATTGACCCGAACCGCGTCACCTTGGAACAAGTGGATGCAAA
CATTATCCGTTGTCCCGATCCAGCGGCGGCAGAGAAGATGATTGCATATG
TTGATCAGATTCGCAAGTCTGGAAATAGTGTCGGAGGAGTGGTTGAGGTG
GTGGCAAGGAACGTTCCTGCCGGTTTGGGATCTCCTGTTTTCGATAAGCT
TGAAGCGGAACTCGCGAAAGCCTGTATGAGCCTGCCGGCCTCGAAAGGTT
TTGAAATTGGCAGCGGTTTTGAGGGAACAATGCTCACAGGTATCGAGCAT
AACGACGAGTTTTACATTGACGACGACGGAAGAACAAGAACAGCCACAAA
TCGTAGTGGAGGTATACAAGGTGGAATAAGTAATGGTGAACCCATCGTAA
TCAGAGTGGCATTTAAGCCTACAAGTACCATAGGGAGAATTCAGAAGACA
GTCACGCGTGGTGGAGAGGAAACAGAACTCAGAGGAAAAGGAAGACATGA
TCCGTGCGTGCTGCCAAGGGCAGTGCCAATGGTCGAATCGATGGTAGCTC
TAGTTCTGGCGGATCACCTTATGCAACAGATTGCACAGAACAGCATAACA
CCGATTCGCGAAGAAGATGCACCGAACCCACTCGGACCTAAACCTGTCTC
TGACGCAGTGACTATGAACATCGGCTGA