Gcaud2259.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2259.t1
Unique NameGcaud2259.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_996_length_15378_cov_4.026820contigNODE_996_length_15378_cov_4.026820:4405..6003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707140.1
Preferred nameNARS
PFAMstRNA-synt_2,tRNA_anti-codon
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01893,ko:K02902
KEGG ReactionR03648
KEGG Pathwayko00970,ko03010,map00970,map03010
KEGG ModuleM00178,M00359,M00360
GOsGO:0000122,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue2.46e-224
EggNOG OGsCOG0017@1|root,KOG0555@2759|Eukaryota
EC6.1.1.22
Descriptionasparagine-tRNA ligase activity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2259Gcaud2259Gracilaria caudata M_176_S67 malegeneNODE_996_length_15378_cov_4.026820 4405..6003 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2259.t1.start1Gcaud2259.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_996_length_15378_cov_4.026820 4405..4407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2259.t1.CDS1Gcaud2259.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_996_length_15378_cov_4.026820 4405..6003 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2259.t1.exon1Gcaud2259.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_996_length_15378_cov_4.026820 4405..6003 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2259.t1.stop1Gcaud2259.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_996_length_15378_cov_4.026820 6001..6003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2259.t1Gcaud2259.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_996_length_15378_cov_4.026820 4405..6003 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2259.t1 ID=Gcaud2259.t1|Name=Gcaud2259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=533bp
MAPITEPGPTVEEGEFHKMTLDTFVAMSEDDRAKMSATARKKWLKLEKKA
QDKSRKEEEAKERAAAENAARLERAKQIKIEQDPSLPEAKQVKIRDLGKY
VDQRVKVYGWVHHLRADGKKLWFIDLRDGTGFAQVVLTGNMCMTYDAATL
YREAAIAVYGKWIKDEQGRAQGSFPGFELAADYWELVGASCADIDMLFTK
DSNPDILMNQRHLVLRGSKASSIMRMRSIITHCFREHFFDRGYTELSPPT
LVNTQCEGGSTLFNFKYFEDQGYLTQSSQLYLETGIAAVNDCFCILPSYR
AEKSQTRRHLAEFHHIEAERPFITFEDLLETIEDLVCDVIDRVGKKMEGE
MDTFLRASAGKPIPKLERPFLRMTYEDAVQYCRDHEIYKDPETKEHFEFG
DDIPEKPEREMTDQINRPIMLIKFPASLKSFYMQKCEDDKRLTESVDLLL
PGVGEVVGGSMRMWNADELMEAYKKENMDPAPYYWFTDQRKYGSCPHGGY
GLGLERFICALLGIHHIRDACLYPRYRGRISP*
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spliced messenger RNA

>Gcaud2259.t1 ID=Gcaud2259.t1|Name=Gcaud2259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:4405..6003+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGATAACAGAGCCTGGACCGACCGTAGAGGAAGGTGAGTTCCA
CAAGATGACACTTGACACCTTCGTCGCAATGTCCGAGGACGACCGGGCGA
AGATGAGTGCCACGGCTCGGAAGAAGTGGCTCAAACTGGAGAAGAAGGCT
CAAGATAAATCACGCAAAGAGGAAGAGGCCAAGGAGCGCGCCGCCGCCGA
GAATGCAGCGCGTCTAGAACGCGCGAAGCAGATCAAAATTGAGCAGGATC
CTTCACTACCGGAGGCCAAACAGGTGAAGATCCGAGATCTAGGCAAATAT
GTAGACCAGCGCGTCAAGGTATATGGATGGGTCCACCATCTTCGTGCAGA
TGGTAAGAAGTTGTGGTTCATTGACCTGCGAGATGGTACCGGATTTGCTC
AGGTTGTTCTTACGGGCAATATGTGCATGACGTACGATGCGGCAACCCTG
TATCGCGAGGCAGCTATTGCTGTGTACGGAAAGTGGATTAAGGATGAACA
GGGTCGTGCTCAGGGATCCTTCCCAGGCTTTGAGCTTGCTGCCGACTATT
GGGAGTTGGTTGGTGCTAGCTGTGCTGACATCGACATGCTGTTCACCAAA
GACAGCAACCCTGATATTCTTATGAACCAGCGCCATCTTGTTCTTAGAGG
TTCAAAGGCTTCTTCAATCATGAGAATGCGATCTATCATCACACATTGCT
TCAGAGAACACTTCTTCGATCGCGGCTACACTGAGCTCTCCCCGCCCACT
CTTGTTAACACCCAGTGCGAAGGAGGTTCTACGCTGTTCAACTTCAAATA
TTTTGAAGACCAGGGTTATCTGACACAGAGTTCTCAGCTTTACTTGGAAA
CTGGTATTGCTGCAGTCAACGACTGTTTTTGTATCCTTCCCAGTTACAGA
GCGGAAAAGAGCCAAACCAGACGACATCTGGCTGAGTTTCATCACATCGA
AGCCGAGCGTCCATTCATCACCTTCGAAGATCTTTTGGAAACTATCGAAG
ACCTTGTCTGTGATGTTATCGATAGAGTGGGAAAGAAGATGGAGGGTGAA
ATGGACACGTTCCTACGTGCGTCAGCAGGGAAACCTATTCCAAAATTGGA
AAGGCCATTCTTGAGGATGACCTACGAGGATGCGGTTCAGTACTGCCGCG
ACCACGAGATCTACAAGGACCCCGAAACGAAGGAACATTTCGAGTTTGGG
GATGATATTCCGGAAAAACCTGAGCGAGAGATGACCGATCAAATAAACAG
ACCTATCATGCTCATCAAGTTCCCGGCATCGCTGAAGAGTTTCTATATGC
AGAAGTGTGAGGATGATAAGCGTTTAACTGAATCGGTCGATCTTTTGCTA
CCTGGTGTGGGCGAAGTTGTGGGTGGATCGATGCGTATGTGGAATGCCGA
CGAGCTCATGGAAGCTTACAAGAAAGAGAACATGGATCCAGCTCCCTACT
ACTGGTTTACTGATCAGAGGAAGTATGGTTCATGTCCTCATGGAGGCTAC
GGCCTTGGACTGGAGAGGTTCATTTGTGCTCTTCTTGGCATTCACCATAT
TCGTGACGCCTGTCTATATCCTCGCTACCGTGGACGCATCTCTCCGTGA
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protein sequence of Gcaud2259.t1

>Gcaud2259.t1 ID=Gcaud2259.t1|Name=Gcaud2259.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=533bp
MAPITEPGPTVEEGEFHKMTLDTFVAMSEDDRAKMSATARKKWLKLEKKA
QDKSRKEEEAKERAAAENAARLERAKQIKIEQDPSLPEAKQVKIRDLGKY
VDQRVKVYGWVHHLRADGKKLWFIDLRDGTGFAQVVLTGNMCMTYDAATL
YREAAIAVYGKWIKDEQGRAQGSFPGFELAADYWELVGASCADIDMLFTK
DSNPDILMNQRHLVLRGSKASSIMRMRSIITHCFREHFFDRGYTELSPPT
LVNTQCEGGSTLFNFKYFEDQGYLTQSSQLYLETGIAAVNDCFCILPSYR
AEKSQTRRHLAEFHHIEAERPFITFEDLLETIEDLVCDVIDRVGKKMEGE
MDTFLRASAGKPIPKLERPFLRMTYEDAVQYCRDHEIYKDPETKEHFEFG
DDIPEKPEREMTDQINRPIMLIKFPASLKSFYMQKCEDDKRLTESVDLLL
PGVGEVVGGSMRMWNADELMEAYKKENMDPAPYYWFTDQRKYGSCPHGGY
GLGLERFICALLGIHHIRDACLYPRYRGRISP*
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mRNA from alignment at NODE_996_length_15378_cov_4.026820:4405..6003+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2259.t1 ID=Gcaud2259.t1|Name=Gcaud2259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:4405..6003+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGATAACAGAGCCTGGACCGACCGTAGAGGAAGGTGAGTTCCA
CAAGATGACACTTGACACCTTCGTCGCAATGTCCGAGGACGACCGGGCGA
AGATGAGTGCCACGGCTCGGAAGAAGTGGCTCAAACTGGAGAAGAAGGCT
CAAGATAAATCACGCAAAGAGGAAGAGGCCAAGGAGCGCGCCGCCGCCGA
GAATGCAGCGCGTCTAGAACGCGCGAAGCAGATCAAAATTGAGCAGGATC
CTTCACTACCGGAGGCCAAACAGGTGAAGATCCGAGATCTAGGCAAATAT
GTAGACCAGCGCGTCAAGGTATATGGATGGGTCCACCATCTTCGTGCAGA
TGGTAAGAAGTTGTGGTTCATTGACCTGCGAGATGGTACCGGATTTGCTC
AGGTTGTTCTTACGGGCAATATGTGCATGACGTACGATGCGGCAACCCTG
TATCGCGAGGCAGCTATTGCTGTGTACGGAAAGTGGATTAAGGATGAACA
GGGTCGTGCTCAGGGATCCTTCCCAGGCTTTGAGCTTGCTGCCGACTATT
GGGAGTTGGTTGGTGCTAGCTGTGCTGACATCGACATGCTGTTCACCAAA
GACAGCAACCCTGATATTCTTATGAACCAGCGCCATCTTGTTCTTAGAGG
TTCAAAGGCTTCTTCAATCATGAGAATGCGATCTATCATCACACATTGCT
TCAGAGAACACTTCTTCGATCGCGGCTACACTGAGCTCTCCCCGCCCACT
CTTGTTAACACCCAGTGCGAAGGAGGTTCTACGCTGTTCAACTTCAAATA
TTTTGAAGACCAGGGTTATCTGACACAGAGTTCTCAGCTTTACTTGGAAA
CTGGTATTGCTGCAGTCAACGACTGTTTTTGTATCCTTCCCAGTTACAGA
GCGGAAAAGAGCCAAACCAGACGACATCTGGCTGAGTTTCATCACATCGA
AGCCGAGCGTCCATTCATCACCTTCGAAGATCTTTTGGAAACTATCGAAG
ACCTTGTCTGTGATGTTATCGATAGAGTGGGAAAGAAGATGGAGGGTGAA
ATGGACACGTTCCTACGTGCGTCAGCAGGGAAACCTATTCCAAAATTGGA
AAGGCCATTCTTGAGGATGACCTACGAGGATGCGGTTCAGTACTGCCGCG
ACCACGAGATCTACAAGGACCCCGAAACGAAGGAACATTTCGAGTTTGGG
GATGATATTCCGGAAAAACCTGAGCGAGAGATGACCGATCAAATAAACAG
ACCTATCATGCTCATCAAGTTCCCGGCATCGCTGAAGAGTTTCTATATGC
AGAAGTGTGAGGATGATAAGCGTTTAACTGAATCGGTCGATCTTTTGCTA
CCTGGTGTGGGCGAAGTTGTGGGTGGATCGATGCGTATGTGGAATGCCGA
CGAGCTCATGGAAGCTTACAAGAAAGAGAACATGGATCCAGCTCCCTACT
ACTGGTTTACTGATCAGAGGAAGTATGGTTCATGTCCTCATGGAGGCTAC
GGCCTTGGACTGGAGAGGTTCATTTGTGCTCTTCTTGGCATTCACCATAT
TCGTGACGCCTGTCTATATCCTCGCTACCGTGGACGCATCTCTCCGTGA
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Coding sequence (CDS) from alignment at NODE_996_length_15378_cov_4.026820:4405..6003+

>Gcaud2259.t1 ID=Gcaud2259.t1|Name=Gcaud2259.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1599bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:4405..6003+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCGATAACAGAGCCTGGACCGACCGTAGAGGAAGGTGAGTTCCA
CAAGATGACACTTGACACCTTCGTCGCAATGTCCGAGGACGACCGGGCGA
AGATGAGTGCCACGGCTCGGAAGAAGTGGCTCAAACTGGAGAAGAAGGCT
CAAGATAAATCACGCAAAGAGGAAGAGGCCAAGGAGCGCGCCGCCGCCGA
GAATGCAGCGCGTCTAGAACGCGCGAAGCAGATCAAAATTGAGCAGGATC
CTTCACTACCGGAGGCCAAACAGGTGAAGATCCGAGATCTAGGCAAATAT
GTAGACCAGCGCGTCAAGGTATATGGATGGGTCCACCATCTTCGTGCAGA
TGGTAAGAAGTTGTGGTTCATTGACCTGCGAGATGGTACCGGATTTGCTC
AGGTTGTTCTTACGGGCAATATGTGCATGACGTACGATGCGGCAACCCTG
TATCGCGAGGCAGCTATTGCTGTGTACGGAAAGTGGATTAAGGATGAACA
GGGTCGTGCTCAGGGATCCTTCCCAGGCTTTGAGCTTGCTGCCGACTATT
GGGAGTTGGTTGGTGCTAGCTGTGCTGACATCGACATGCTGTTCACCAAA
GACAGCAACCCTGATATTCTTATGAACCAGCGCCATCTTGTTCTTAGAGG
TTCAAAGGCTTCTTCAATCATGAGAATGCGATCTATCATCACACATTGCT
TCAGAGAACACTTCTTCGATCGCGGCTACACTGAGCTCTCCCCGCCCACT
CTTGTTAACACCCAGTGCGAAGGAGGTTCTACGCTGTTCAACTTCAAATA
TTTTGAAGACCAGGGTTATCTGACACAGAGTTCTCAGCTTTACTTGGAAA
CTGGTATTGCTGCAGTCAACGACTGTTTTTGTATCCTTCCCAGTTACAGA
GCGGAAAAGAGCCAAACCAGACGACATCTGGCTGAGTTTCATCACATCGA
AGCCGAGCGTCCATTCATCACCTTCGAAGATCTTTTGGAAACTATCGAAG
ACCTTGTCTGTGATGTTATCGATAGAGTGGGAAAGAAGATGGAGGGTGAA
ATGGACACGTTCCTACGTGCGTCAGCAGGGAAACCTATTCCAAAATTGGA
AAGGCCATTCTTGAGGATGACCTACGAGGATGCGGTTCAGTACTGCCGCG
ACCACGAGATCTACAAGGACCCCGAAACGAAGGAACATTTCGAGTTTGGG
GATGATATTCCGGAAAAACCTGAGCGAGAGATGACCGATCAAATAAACAG
ACCTATCATGCTCATCAAGTTCCCGGCATCGCTGAAGAGTTTCTATATGC
AGAAGTGTGAGGATGATAAGCGTTTAACTGAATCGGTCGATCTTTTGCTA
CCTGGTGTGGGCGAAGTTGTGGGTGGATCGATGCGTATGTGGAATGCCGA
CGAGCTCATGGAAGCTTACAAGAAAGAGAACATGGATCCAGCTCCCTACT
ACTGGTTTACTGATCAGAGGAAGTATGGTTCATGTCCTCATGGAGGCTAC
GGCCTTGGACTGGAGAGGTTCATTTGTGCTCTTCTTGGCATTCACCATAT
TCGTGACGCCTGTCTATATCCTCGCTACCGTGGACGCATCTCTCCGTGA
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