Gcaud2257.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2257.t1
Unique Name	Gcaud2257.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_996_length_15378_cov_4.026820	contig	NODE_996_length_15378_cov_4.026820:2..998 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708114.1
PFAMs	UBA,XPC-binding,ubiquitin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10839,ko:K18180
KEGG Pathway	ko03420,ko04141,ko04714,map03420,map04141,map04714
Evalue	2.26e-58
EggNOG OGs	COG5272@1\|root,KOG0011@2759\|Eukaryota
Description	damaged DNA binding
COG category	O
BRITE	ko00000,ko00001,ko03029,ko03051,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2257	Gcaud2257	Gracilaria caudata M_176_S67 male	gene	NODE_996_length_15378_cov_4.026820 2..998 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2257.t1.CDS1	Gcaud2257.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_996_length_15378_cov_4.026820 2..998 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2257.t1.exon1	Gcaud2257.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_996_length_15378_cov_4.026820 2..998 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2257.t1.stop1	Gcaud2257.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_996_length_15378_cov_4.026820 996..998 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2257.t1	Gcaud2257.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_996_length_15378_cov_4.026820 2..998 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_996_length_15378_cov_4.026820:2..998+
coding sequence from alignment at NODE_996_length_15378_cov_4.026820:2..998+

mRNA sequence

>Gcaud2257.t1 ID=Gcaud2257.t1|Name=Gcaud2257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=333bp
XPEPTPAPEPQSTPVASQPATSSAAEPSGSSSLVVGQEYEQTVRRICEMG
FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPPAAFPAATPPPQP
AATTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGG
SGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQA
EFTRLINEPIPEGEDGGDAAMEQLAQAMAGAGGGREGPGPGQILVTEEEH
EQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQLRADQA
ANAAAANAAAEQDNSGQNQSDRPDQGNQGPPA*

spliced messenger RNA

>Gcaud2257.t1 ID=Gcaud2257.t1|Name=Gcaud2257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=997bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:2..998+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CCCCGAACCCACCCCCGCTCCGGAGCCGCAATCTACTCCTGTCGCGTCTC
AACCTGCCACATCTTCCGCCGCAGAGCCCTCGGGCTCTAGTTCCTTAGTC
GTCGGTCAGGAGTACGAGCAAACAGTGCGCCGAATTTGTGAAATGGGATT
CCCGGAGGCTGAAGTCAAGAAAGCTCTGCGTGCCGCTTTCAACAACCCAG
ATCGAGCCGTAGACTATCTGTTTAATGGAATTCCTGAAAGCGCAATGCCG
TCCGCTCCACCTGCTGCATTCCCCGCTGCCACGCCACCACCTCAACCGGC
TGCTACAACTGGTGCTACGCCGAATCAGTCTGAACCAAATGCACCTGCCG
CTGGTCAGCAGACTTCTACTCGCTCTGCTGCCGCCGCCACCCCTTTCAAT
ATGTTTGAGGCTGCCGGTAACTCTCCCAGCGCTGGCGGCGGCGGTGGTAG
CGGCAGTCTCGACTTTCTCCGATCTGTTCCTCAATTCAACCTCATGAGAC
GCTTAATTCAATCAAATCCGGCAGTGCTTCCTCAGCTTCTGCAGCAACTT
GAGAACGTCAACCCCTCATTGATGGCTCTCATTGAAGATAATCAGGCAGA
ATTCACAAGGCTCATCAATGAACCGATCCCGGAAGGAGAGGATGGCGGTG
ACGCCGCCATGGAGCAATTGGCGCAAGCCATGGCGGGGGCAGGTGGTGGT
AGGGAGGGCCCAGGCCCGGGGCAAATACTCGTCACCGAGGAAGAACATGA
ACAGCTACATCGACTGAATGAATTGGCCGCTGGATTCGGGCTTGAAAGAG
CTCAGGTCGTTGAAACGTGGCTGGCTTGCGATCGCAACGAAAATCTTGCC
GCGAACTACTTGGTAGAGAATGCCGAGCAACTCCGAGCTGATCAAGCGGC
AAACGCTGCCGCCGCTAACGCCGCCGCTGAACAGGACAACAGTGGTCAGA
ATCAATCCGACCGACCTGACCAAGGAAATCAGGGCCCTCCTGCTTGA

protein sequence of Gcaud2257.t1

>Gcaud2257.t1 ID=Gcaud2257.t1|Name=Gcaud2257.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=333bp
XPEPTPAPEPQSTPVASQPATSSAAEPSGSSSLVVGQEYEQTVRRICEMG
FPEAEVKKALRAAFNNPDRAVDYLFNGIPESAMPSAPPAAFPAATPPPQP
AATTGATPNQSEPNAPAAGQQTSTRSAAAATPFNMFEAAGNSPSAGGGGG
SGSLDFLRSVPQFNLMRRLIQSNPAVLPQLLQQLENVNPSLMALIEDNQA
EFTRLINEPIPEGEDGGDAAMEQLAQAMAGAGGGREGPGPGQILVTEEEH
EQLHRLNELAAGFGLERAQVVETWLACDRNENLAANYLVENAEQLRADQA
ANAAAANAAAEQDNSGQNQSDRPDQGNQGPPA*

mRNA from alignment at NODE_996_length_15378_cov_4.026820:2..998+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2257.t1 ID=Gcaud2257.t1|Name=Gcaud2257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=997bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:2..998+ (Gracilaria caudata M_176_S67 male)
CCCCGAACCCACCCCCGCTCCGGAGCCGCAATCTACTCCTGTCGCGTCTC
AACCTGCCACATCTTCCGCCGCAGAGCCCTCGGGCTCTAGTTCCTTAGTC
GTCGGTCAGGAGTACGAGCAAACAGTGCGCCGAATTTGTGAAATGGGATT
CCCGGAGGCTGAAGTCAAGAAAGCTCTGCGTGCCGCTTTCAACAACCCAG
ATCGAGCCGTAGACTATCTGTTTAATGGAATTCCTGAAAGCGCAATGCCG
TCCGCTCCACCTGCTGCATTCCCCGCTGCCACGCCACCACCTCAACCGGC
TGCTACAACTGGTGCTACGCCGAATCAGTCTGAACCAAATGCACCTGCCG
CTGGTCAGCAGACTTCTACTCGCTCTGCTGCCGCCGCCACCCCTTTCAAT
ATGTTTGAGGCTGCCGGTAACTCTCCCAGCGCTGGCGGCGGCGGTGGTAG
CGGCAGTCTCGACTTTCTCCGATCTGTTCCTCAATTCAACCTCATGAGAC
GCTTAATTCAATCAAATCCGGCAGTGCTTCCTCAGCTTCTGCAGCAACTT
GAGAACGTCAACCCCTCATTGATGGCTCTCATTGAAGATAATCAGGCAGA
ATTCACAAGGCTCATCAATGAACCGATCCCGGAAGGAGAGGATGGCGGTG
ACGCCGCCATGGAGCAATTGGCGCAAGCCATGGCGGGGGCAGGTGGTGGT
AGGGAGGGCCCAGGCCCGGGGCAAATACTCGTCACCGAGGAAGAACATGA
ACAGCTACATCGACTGAATGAATTGGCCGCTGGATTCGGGCTTGAAAGAG
CTCAGGTCGTTGAAACGTGGCTGGCTTGCGATCGCAACGAAAATCTTGCC
GCGAACTACTTGGTAGAGAATGCCGAGCAACTCCGAGCTGATCAAGCGGC
AAACGCTGCCGCCGCTAACGCCGCCGCTGAACAGGACAACAGTGGTCAGA
ATCAATCCGACCGACCTGACCAAGGAAATCAGGGCCCTCCTGCTTGA

Coding sequence (CDS) from alignment at NODE_996_length_15378_cov_4.026820:2..998+

>Gcaud2257.t1 ID=Gcaud2257.t1|Name=Gcaud2257.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=997bp|location=Sequence derived from alignment at NODE_996_length_15378_cov_4.026820:2..998+ (Gracilaria caudata M_176_S67 male)
CCCCGAACCCACCCCCGCTCCGGAGCCGCAATCTACTCCTGTCGCGTCTC
AACCTGCCACATCTTCCGCCGCAGAGCCCTCGGGCTCTAGTTCCTTAGTC
GTCGGTCAGGAGTACGAGCAAACAGTGCGCCGAATTTGTGAAATGGGATT
CCCGGAGGCTGAAGTCAAGAAAGCTCTGCGTGCCGCTTTCAACAACCCAG
ATCGAGCCGTAGACTATCTGTTTAATGGAATTCCTGAAAGCGCAATGCCG
TCCGCTCCACCTGCTGCATTCCCCGCTGCCACGCCACCACCTCAACCGGC
TGCTACAACTGGTGCTACGCCGAATCAGTCTGAACCAAATGCACCTGCCG
CTGGTCAGCAGACTTCTACTCGCTCTGCTGCCGCCGCCACCCCTTTCAAT
ATGTTTGAGGCTGCCGGTAACTCTCCCAGCGCTGGCGGCGGCGGTGGTAG
CGGCAGTCTCGACTTTCTCCGATCTGTTCCTCAATTCAACCTCATGAGAC
GCTTAATTCAATCAAATCCGGCAGTGCTTCCTCAGCTTCTGCAGCAACTT
GAGAACGTCAACCCCTCATTGATGGCTCTCATTGAAGATAATCAGGCAGA
ATTCACAAGGCTCATCAATGAACCGATCCCGGAAGGAGAGGATGGCGGTG
ACGCCGCCATGGAGCAATTGGCGCAAGCCATGGCGGGGGCAGGTGGTGGT
AGGGAGGGCCCAGGCCCGGGGCAAATACTCGTCACCGAGGAAGAACATGA
ACAGCTACATCGACTGAATGAATTGGCCGCTGGATTCGGGCTTGAAAGAG
CTCAGGTCGTTGAAACGTGGCTGGCTTGCGATCGCAACGAAAATCTTGCC
GCGAACTACTTGGTAGAGAATGCCGAGCAACTCCGAGCTGATCAAGCGGC
AAACGCTGCCGCCGCTAACGCCGCCGCTGAACAGGACAACAGTGGTCAGA
ATCAATCCGACCGACCTGACCAAGGAAATCAGGGCCCTCCTGCTTGA