Gcaud828.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud828.t1
Unique NameGcaud828.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_995_length_15379_cov_4.695120contigNODE_995_length_15379_cov_4.695120:12255..12539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002950294.1
PFAMsSec34
Max annot lvl3041|Chlorophyta
KEGG koko:K20290
Evalue1.3e-07
EggNOG OGsKOG2604@1|root,KOG2604@2759|Eukaryota,37PAQ@33090|Viridiplantae,34GY9@3041|Chlorophyta
DescriptionSec34-like family
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud828Gcaud828Gracilaria caudata M_176_S67 malegeneNODE_995_length_15379_cov_4.695120 12255..12539 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud828.t1.start1Gcaud828.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_995_length_15379_cov_4.695120 12255..12257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud828.t1.CDS1Gcaud828.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_995_length_15379_cov_4.695120 12255..12539 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud828.t1.exon1Gcaud828.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_995_length_15379_cov_4.695120 12255..12539 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud828.t1.stop1Gcaud828.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_995_length_15379_cov_4.695120 12537..12539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud828.t1Gcaud828.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_995_length_15379_cov_4.695120 12255..12539 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud828.t1 ID=Gcaud828.t1|Name=Gcaud828.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=95bp
MGKIGKAVNEELAPVVERIKIYVTKPASHGVLLRPVRANMAEAATELLSV
LQQQYASEERKEIADDGGKVGKLLNDVDLVTGIGMKAFSSLQKY*
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spliced messenger RNA

>Gcaud828.t1 ID=Gcaud828.t1|Name=Gcaud828.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp|location=Sequence derived from alignment at NODE_995_length_15379_cov_4.695120:12255..12539+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGATTGGAAAAGCTGTGAATGAAGAATTGGCGCCGGTCGTTGA
GCGAATCAAGATTTATGTCACAAAGCCGGCATCTCATGGAGTACTATTAC
GACCAGTCCGTGCTAATATGGCTGAAGCCGCCACTGAGCTTCTGTCGGTC
CTGCAACAGCAGTATGCATCGGAGGAACGGAAGGAAATTGCGGATGACGG
TGGAAAGGTTGGGAAATTGCTGAACGACGTAGATTTGGTTACAGGGATCG
GAATGAAAGCATTTAGCTCGTTGCAGAAGTACTGA
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protein sequence of Gcaud828.t1

>Gcaud828.t1 ID=Gcaud828.t1|Name=Gcaud828.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=95bp
MGKIGKAVNEELAPVVERIKIYVTKPASHGVLLRPVRANMAEAATELLSV
LQQQYASEERKEIADDGGKVGKLLNDVDLVTGIGMKAFSSLQKY*
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mRNA from alignment at NODE_995_length_15379_cov_4.695120:12255..12539+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud828.t1 ID=Gcaud828.t1|Name=Gcaud828.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp|location=Sequence derived from alignment at NODE_995_length_15379_cov_4.695120:12255..12539+ (Gracilaria caudata M_176_S67 male)
ATGGGGAAGATTGGAAAAGCTGTGAATGAAGAATTGGCGCCGGTCGTTGA
GCGAATCAAGATTTATGTCACAAAGCCGGCATCTCATGGAGTACTATTAC
GACCAGTCCGTGCTAATATGGCTGAAGCCGCCACTGAGCTTCTGTCGGTC
CTGCAACAGCAGTATGCATCGGAGGAACGGAAGGAAATTGCGGATGACGG
TGGAAAGGTTGGGAAATTGCTGAACGACGTAGATTTGGTTACAGGGATCG
GAATGAAAGCATTTAGCTCGTTGCAGAAGTACTGA
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Coding sequence (CDS) from alignment at NODE_995_length_15379_cov_4.695120:12255..12539+

>Gcaud828.t1 ID=Gcaud828.t1|Name=Gcaud828.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=285bp|location=Sequence derived from alignment at NODE_995_length_15379_cov_4.695120:12255..12539+ (Gracilaria caudata M_176_S67 male)
ATGGGGAAGATTGGAAAAGCTGTGAATGAAGAATTGGCGCCGGTCGTTGA
GCGAATCAAGATTTATGTCACAAAGCCGGCATCTCATGGAGTACTATTAC
GACCAGTCCGTGCTAATATGGCTGAAGCCGCCACTGAGCTTCTGTCGGTC
CTGCAACAGCAGTATGCATCGGAGGAACGGAAGGAAATTGCGGATGACGG
TGGAAAGGTTGGGAAATTGCTGAACGACGTAGATTTGGTTACAGGGATCG
GAATGAAAGCATTTAGCTCGTTGCAGAAGTACTGA
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