Gcaud1724.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1724.t1
Unique Name	Gcaud1724.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_994_length_15385_cov_4.714921	contig	NODE_994_length_15385_cov_4.714921:918..2114 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706746.1
PFAMs	ENTH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12471
KEGG Pathway	ko04144,map04144
GOs	GO:0000278,GO:0000281,GO:0000331,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005886,GO:0005905,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008104,GO:0008150,GO:0008289,GO:0009653,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0019220,GO:0019222,GO:0022402,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030154,GO:0030276,GO:0030435,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031323,GO:0031399,GO:0031410,GO:0031982,GO:0032268,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0035091,GO:0035303,GO:0035304,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045334,GO:0048475,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051641,GO:0060255,GO:0061640,GO:0065007,GO:0070727,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0097435,GO:0097708,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:1901981,GO:1902936,GO:1903047,GO:1990778
Evalue	2.46e-41
EggNOG OGs	KOG2056@1\|root,KOG2056@2759\|Eukaryota
Description	lipid binding
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1724	Gcaud1724	Gracilaria caudata M_176_S67 male	gene	NODE_994_length_15385_cov_4.714921 918..2114 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1724.t1	Gcaud1724.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_994_length_15385_cov_4.714921 918..2114 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1724.t1.stop1	Gcaud1724.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_994_length_15385_cov_4.714921 918..920 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1724.t1.CDS1	Gcaud1724.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_994_length_15385_cov_4.714921 918..1091 -
Gcaud1724.t1.CDS2	Gcaud1724.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_994_length_15385_cov_4.714921 1158..2114 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1724.t1.exon1	Gcaud1724.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_994_length_15385_cov_4.714921 918..1091 -
Gcaud1724.t1.exon2	Gcaud1724.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_994_length_15385_cov_4.714921 1158..2114 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1724.t1.intron1	Gcaud1724.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_994_length_15385_cov_4.714921 1092..1157 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1724.t1.start1	Gcaud1724.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_994_length_15385_cov_4.714921 2112..2114 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_994_length_15385_cov_4.714921:918..2114-
coding sequence from alignment at NODE_994_length_15385_cov_4.714921:918..2114-

mRNA sequence

>Gcaud1724.t1 ID=Gcaud1724.t1|Name=Gcaud1724.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp
MDEISRKIRNIDWKSLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASVTDLHQIAGGTYNPQDYALIMSIIWQRLGSSRWRCVYKGLEVLKY
VVMHGSSRCLTEARGAIGHLEALRAYRKVADGRDVGEGVRNRAALLCDML
ADDELLESEREKSREIRAKIEAGGSGGSVSSDQYRFGNHMSTTSATVTST
GTATFKGYDDDGAYEDEPAGAFSKLRIEDKKQVDLLGDGDDESDAAATNG
VEDDDDEFDPRGVGNVANTGAKQEDDLLALALSGPDVAPQPALPASSGSM
RTSELVQQLAAQRTTALVPGVQAGKDSGLGAFSGFGVGAASPESKPPMPA
PGRLQRKEEADPFGDLMDTAKKSGVV*

spliced messenger RNA

>Gcaud1724.t1 ID=Gcaud1724.t1|Name=Gcaud1724.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:918..2114- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAAATATCGCGTAAGATACGCAACATAGACTGGAAGTCGTTGCA
AAAGTCTGCTCGAAAGGTTCAGGCTTCCACTGCGTCAGCCCTAAAGGACA
TGGTCATGACGGACCTTGAAAACAAAACTCGATCTGCTACTGCAGACACC
GCGTGGGGAGCGTCCGTGACAGACTTGCATCAAATAGCTGGGGGTACGTA
CAATCCCCAAGACTATGCGCTGATCATGTCCATCATTTGGCAGCGTCTTG
GCAGTTCTCGCTGGAGATGTGTGTACAAGGGATTAGAGGTTCTGAAGTAC
GTTGTCATGCACGGCAGTTCTCGCTGCCTTACGGAGGCTAGGGGAGCCAT
TGGTCACTTGGAAGCTCTTCGCGCATATCGCAAGGTTGCAGATGGAAGAG
ACGTCGGCGAGGGTGTGCGAAATAGAGCAGCCTTACTTTGTGATATGCTT
GCTGATGACGAACTACTCGAGTCAGAGCGCGAAAAGAGCCGCGAGATTCG
AGCCAAGATTGAAGCAGGTGGTTCGGGTGGTTCTGTTAGTAGCGATCAAT
ACCGGTTCGGAAACCATATGAGCACTACCAGTGCTACGGTAACTTCTACC
GGTACGGCTACATTCAAGGGCTATGACGACGACGGTGCCTACGAAGATGA
GCCAGCGGGTGCGTTCAGCAAATTGCGCATTGAAGATAAAAAGCAAGTTG
ACCTTCTTGGTGATGGTGATGACGAGTCAGATGCTGCTGCTACCAATGGC
GTGGAGGATGATGATGATGAATTCGACCCACGTGGCGTGGGCAACGTGGC
GAACACAGGAGCTAAGCAAGAAGATGATCTACTTGCACTCGCTCTCTCGG
GACCAGATGTCGCACCTCAGCCAGCTCTACCTGCGTCAAGTGGCAGCATG
AGGACTTCCGAACTTGTTCAGCAGCTGGCCGCACAAAGAACAACTGCATT
GGTACCAGGGGTACAAGCAGGGAAAGATTCTGGGCTTGGTGCTTTCAGCG
GGTTTGGAGTAGGCGCGGCATCACCCGAATCAAAACCGCCGATGCCAGCG
CCAGGTAGACTACAAAGAAAAGAAGAGGCGGATCCATTTGGAGATTTAAT
GGATACAGCAAAAAAGAGCGGAGTTGTATAA

protein sequence of Gcaud1724.t1

>Gcaud1724.t1 ID=Gcaud1724.t1|Name=Gcaud1724.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=377bp
MDEISRKIRNIDWKSLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASVTDLHQIAGGTYNPQDYALIMSIIWQRLGSSRWRCVYKGLEVLKY
VVMHGSSRCLTEARGAIGHLEALRAYRKVADGRDVGEGVRNRAALLCDML
ADDELLESEREKSREIRAKIEAGGSGGSVSSDQYRFGNHMSTTSATVTST
GTATFKGYDDDGAYEDEPAGAFSKLRIEDKKQVDLLGDGDDESDAAATNG
VEDDDDEFDPRGVGNVANTGAKQEDDLLALALSGPDVAPQPALPASSGSM
RTSELVQQLAAQRTTALVPGVQAGKDSGLGAFSGFGVGAASPESKPPMPA
PGRLQRKEEADPFGDLMDTAKKSGVV*

mRNA from alignment at NODE_994_length_15385_cov_4.714921:918..2114-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1724.t1 ID=Gcaud1724.t1|Name=Gcaud1724.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:918..2114- (Gracilaria caudata M_176_S67 male)
ATGGATGAAATATCGCGTAAGATACGCAACATAGACTGGAAGTCGTTGCA
AAAGTCTGCTCGAAAGGTTCAGGCTTCCACTGCGTCAGCCCTAAAGGACA
TGGTCATGACGGACCTTGAAAACAAAACTCGATCTGCTACTGCAGACACC
GCGTGGGGAGCGTCCGTGACAGACTTGCATCAAATAGCTGGGGGTACGTA
CAATCCCCAAGACTATGCGCTGATCATGTCCATCATTTGGCAGCGTCTTG
GCAGTTCTCGCTGGAGATGTGTGTACAAGGGATTAGAGGTTCTGAAGTAC
GTTGTCATGCACGGCAGTTCTCGCTGCCTTACGGAGGCTAGGGGAGCCAT
TGGTCACTTGGAAGCTCTTCGCGCATATCGCAAGGTTGCAGATGGAAGAG
ACGTCGGCGAGGGTGTGCGAAATAGAGCAGCCTTACTTTGTGATATGCTT
GCTGATGACGAACTACTCGAGTCAGAGCGCGAAAAGAGCCGCGAGATTCG
AGCCAAGATTGAAGCAGGTGGTTCGGGTGGTTCTGTTAGTAGCGATCAAT
ACCGGTTCGGAAACCATATGAGCACTACCAGTGCTACGGTAACTTCTACC
GGTACGGCTACATTCAAGGGCTATGACGACGACGGTGCCTACGAAGATGA
GCCAGCGGGTGCGTTCAGCAAATTGCGCATTGAAGATAAAAAGCAAGTTG
ACCTTCTTGGTGATGGTGATGACGAGTCAGATGCTGCTGCTACCAATGGC
GTGGAGGATGATGATGATGAATTCGACCCACGTGGCGTGGGCAACGTGGC
GAACACAGGAGCTAAGCAAGAAGATGATCTACTTGCACTCGCTCTCTCGG
GACCAGATGTCGCACCTCAGCCAGCTCTACCTGCGTCAAGTGGCAGCATG
AGGACTTCCGAACTTGTTCAGCAGCTGGCCGCACAAAGAACAACTGCATT
GGTACCAGTACAAACATAGGCACCAAGTGAGGCTTACTCATTCAGTCCCC
CTATCCAAACATACAACACACAGGGGGTACAAGCAGGGAAAGATTCTGGG
CTTGGTGCTTTCAGCGGGTTTGGAGTAGGCGCGGCATCACCCGAATCAAA
ACCGCCGATGCCAGCGCCAGGTAGACTACAAAGAAAAGAAGAGGCGGATC
CATTTGGAGATTTAATGGATACAGCAAAAAAGAGCGGAGTTGTATAA

Coding sequence (CDS) from alignment at NODE_994_length_15385_cov_4.714921:918..2114-

>Gcaud1724.t1 ID=Gcaud1724.t1|Name=Gcaud1724.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1131bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:918..2114- (Gracilaria caudata M_176_S67 male)
ATGGATGAAATATCGCGTAAGATACGCAACATAGACTGGAAGTCGTTGCA
AAAGTCTGCTCGAAAGGTTCAGGCTTCCACTGCGTCAGCCCTAAAGGACA
TGGTCATGACGGACCTTGAAAACAAAACTCGATCTGCTACTGCAGACACC
GCGTGGGGAGCGTCCGTGACAGACTTGCATCAAATAGCTGGGGGTACGTA
CAATCCCCAAGACTATGCGCTGATCATGTCCATCATTTGGCAGCGTCTTG
GCAGTTCTCGCTGGAGATGTGTGTACAAGGGATTAGAGGTTCTGAAGTAC
GTTGTCATGCACGGCAGTTCTCGCTGCCTTACGGAGGCTAGGGGAGCCAT
TGGTCACTTGGAAGCTCTTCGCGCATATCGCAAGGTTGCAGATGGAAGAG
ACGTCGGCGAGGGTGTGCGAAATAGAGCAGCCTTACTTTGTGATATGCTT
GCTGATGACGAACTACTCGAGTCAGAGCGCGAAAAGAGCCGCGAGATTCG
AGCCAAGATTGAAGCAGGTGGTTCGGGTGGTTCTGTTAGTAGCGATCAAT
ACCGGTTCGGAAACCATATGAGCACTACCAGTGCTACGGTAACTTCTACC
GGTACGGCTACATTCAAGGGCTATGACGACGACGGTGCCTACGAAGATGA
GCCAGCGGGTGCGTTCAGCAAATTGCGCATTGAAGATAAAAAGCAAGTTG
ACCTTCTTGGTGATGGTGATGACGAGTCAGATGCTGCTGCTACCAATGGC
GTGGAGGATGATGATGATGAATTCGACCCACGTGGCGTGGGCAACGTGGC
GAACACAGGAGCTAAGCAAGAAGATGATCTACTTGCACTCGCTCTCTCGG
GACCAGATGTCGCACCTCAGCCAGCTCTACCTGCGTCAAGTGGCAGCATG
AGGACTTCCGAACTTGTTCAGCAGCTGGCCGCACAAAGAACAACTGCATT
GGTACCAGGGGTACAAGCAGGGAAAGATTCTGGGCTTGGTGCTTTCAGCG
GGTTTGGAGTAGGCGCGGCATCACCCGAATCAAAACCGCCGATGCCAGCG
CCAGGTAGACTACAAAGAAAAGAAGAGGCGGATCCATTTGGAGATTTAAT
GGATACAGCAAAAAAGAGCGGAGTTGTATAA