Gcaud1727.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1727.t1
Unique NameGcaud1727.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Homology
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A2V3IEW0_9FLOR (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEW0_9FLOR)

HSP 1 Score: 293 bits (751), Expect = 1.470e-98
Identity = 133/170 (78.24%), Postives = 150/170 (88.24%), Query Frame = 0
Query:    1 MDGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTTASMALWDAYKCVTVRGNSRR 170
            MDGEK LH+VFV+PQIHWNTGNIGRTCLGLGAALHL+GP+GFSLDE+QVRRAGLDYWQHVD+ VY+DW QFA+GKMK LGGTRLFFTKFG++CA+EI+W   GK VL+FGSEV GFD IR WL ++G  E RVAFPMVDDRFRSFNLSTTASMALWDAY+ V  RG+  R
Sbjct:   69 MDGEKALHVVFVHPQIHWNTGNIGRTCLGLGAALHLIGPLGFSLDEKQVRRAGLDYWQHVDVRVYEDWAQFANGKMKQLGGTRLFFTKFGDRCASEIEWNERGKTVLVFGSEVHGFDGIRDWLHSEGKHEIRVAFPMVDDRFRSFNLSTTASMALWDAYRHVARRGHVAR 238          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A7S0ZGK6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGK6_9RHOD)

HSP 1 Score: 204 bits (520), Expect = 2.780e-63
Identity = 94/162 (58.02%), Postives = 120/162 (74.07%), Query Frame = 0
Query:    2 DGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPM-VDDRFRSFNLSTTASMALWDAYKCV 162
            DGE LLH+VFV+PQIHWNTGNIGRTCLG+GA LH++GP+GFSLD++ V+RAGLDYW+ VDL VY++W QF    +      R +FTK+      ++ +   GK VLIFGSEVDG  SIR WL+ +   +  VA+PM   D FRS+NLST+ASMALW+AYK +
Sbjct:   90 DGEPLLHVVFVSPQIHWNTGNIGRTCLGIGARLHVIGPIGFSLDDKHVKRAGLDYWKFVDLRVYENWAQFVP--VLKTFTNRFYFTKYAHVSMLDVSFTDSGKTVLIFGSEVDGLTSIREWLNENEDPQHMVAYPMNAPDVFRSYNLSTSASMALWEAYKSI 249          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A1X6NP17_PORUM (SpoU_methylase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NP17_PORUM)

HSP 1 Score: 176 bits (447), Expect = 1.950e-53
Identity = 90/169 (53.25%), Postives = 115/169 (68.05%), Query Frame = 0
Query:    6 LLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEGKIVLIFGSEVDGFDSIR-YWLDNDGC-DERRVAFPMVD-DRFRSFNLSTTASMALWDAYKCVTVRGNSRRG 171
            +LH+VFV+PQI WNTGNIGRTCLGLG  LHL+ P+ FSL    VRRAGLDYW  VD+ +++ W  F    +  LG    F+TK       ++++     +VL+FGSEVDGFDSI   W   +G  D   VAFPMV+ DRFR+FNLST+ASMA+WDAY+ +T+R   R G
Sbjct:    1 MLHVVFVSPQIPWNTGNIGRTCLGLGVRLHLIPPISFSLSAAAVRRAGLDYWWGVDVTIHESWATFRDEVLPGLGDA-YFYTKHAPVTQVDVEYDDARGVVLLFGSEVDGFDSIAGEW---EGVPDATPVAFPMVEGDRFRAFNLSTSASMAVWDAYRQITLRRRLRHG 165          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A7S0BL64_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL64_9RHOD)

HSP 1 Score: 172 bits (436), Expect = 3.770e-51
Identity = 89/162 (54.94%), Postives = 116/162 (71.60%), Query Frame = 0
Query:    2 DGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAA-LHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFA-SGKMKDLGGTRL---FFTKFGEQCATEIQWPTEGK--IVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVD-DRFRSFNLSTTASMAL 155
            D E LLH+VF  PQIHWNTGNIGRTC+G+G A LHLVGP+ FSLDE+QVRRAGLDYWQ VDLH+++ W  F   G  ++  G++    FFTK+G +   ++++PT+GK  IVL+FG+E DG   I   L+N      +VA PM + D  RS+NLST+AS+AL
Sbjct:   56 DLEPLLHVVFYRPQIHWNTGNIGRTCIGIGGAQLHLVGPIAFSLDEKQVRRAGLDYWQSVDLHLWESWADFEMKGPYRE--GSKAESYFFTKYGAESLLDVRFPTDGKTKIVLVFGNETDGLTEIEDQLEN----RNKVALPMHNQDLMRSYNLSTSASIAL 211          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A1E3Y7K4_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium SCN 69-37 TaxID=1660160 RepID=A0A1E3Y7K4_9BACT)

HSP 1 Score: 148 bits (373), Expect = 3.380e-42
Identity = 75/168 (44.64%), Postives = 101/168 (60.12%), Query Frame = 0
Query:    2 DGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTTASMALWDAYKCVTVRGNSR 169
            D    +H+V V+P+IHWNTGN GRTCL +GAALHL+ P+GFSLDERQVRRAGLDYW HVDL V+ DW  F S  + + G    F TK   +   E  +    ++VL+FG E  G  +  +    D    R V  P++    RS NLST+ ++A ++  +  TV   +R
Sbjct:    6 DATPAIHVVLVHPEIHWNTGNAGRTCLAVGAALHLIEPLGFSLDERQVRRAGLDYWAHVDLRVWPDWAAFES-HLPEFGEPFFFSTK-APRSFWEAPFGAPDRVVLVFGRETAGLPADLH----DRYSHRFVRMPILSTHVRSLNLSTSVALAAYEVLRQRTVTRGTR 167          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A7J7IL86_9RHOD (SpoU_methylase domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IL86_9RHOD)

HSP 1 Score: 146 bits (368), Expect = 3.590e-40
Identity = 81/191 (42.41%), Postives = 107/191 (56.02%), Query Frame = 0
Query:    3 GEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEG--------KIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMV---DDRFRSFNLSTTASMALWDAYKCVTVRGNSRRGHNIAQIDNSVA 182
            GE LL+IV   P IHWNTGN  RT +G  A LHL+ P+GFSL +R ++RAGLDYW HVDL V+  W  F    +  LG    FFTKF  +    +              KI LIFG+E+ GF++I      D   ER VA PMV   +   RS+NLST+  + LW+AY+ V V   + RG +  ++ +  A
Sbjct:   55 GEPLLNIVLYAPSIHWNTGNAARTAVGFQARLHLIEPLGFSLSDRHLKRAGLDYWPHVDLRVWPSWSVFWEKGIPTLGHV-FFFTKFAARSLVNVDLVDSSANADLLNTKITLIFGNEIHGFENIP---PEDIPLERTVAIPMVCPSESGIRSYNLSTSVGIVLWEAYRQVHVALRNVRGDSAQELSSRQA 241          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A521TEG9_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521TEG9_9BACT)

HSP 1 Score: 139 bits (349), Expect = 9.460e-39
Identity = 74/158 (46.84%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    7 LHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPT----EGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTTASMALWDAYK 160
            +H+V V+P+IHWNTGN GRTCL +GA LHLV P+GFSLD+RQV+RAGLDYW+HVDL V+ DW  F    +  LG    F TK     AT   W          VLIFG E  G  S      ND    R V  P++ +  RS NLST+ ++A+++  +
Sbjct:    1 MHVVLVHPEIHWNTGNAGRTCLAVGATLHLVEPLGFSLDDRQVKRAGLDYWEHVDLRVWPDWGAFERA-LPALGEPWFFSTK-----ATRELWDAPLGESEDAVLIFGRETGGLPSEVREKYND----RLVKIPILSEHVRSLNLSTSVALAVYEVMR 148          
BLAST of Gcaud1727.t1 vs. uniprot
Match: C1ADV2_GEMAT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=2 Tax=Gemmatimonas aurantiaca TaxID=173480 RepID=C1ADV2_GEMAT)

HSP 1 Score: 137 bits (345), Expect = 5.440e-38
Identity = 73/156 (46.79%), Postives = 96/156 (61.54%), Query Frame = 0
Query:    8 HIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTE----GKIVLIFGSEVDGF-DSIRY-WLDNDGCDERRVAFPMVDDRFRSFNLSTTASMALWD 157
            H+V V+P+IHWNTGN GRTCL  GA LHL+ P+GFSL ER+VRRAGLDYW+HVD+ V+ DW  F + ++  LG    F TK     AT++ W         IVLIFG E  G  + +R  W        R VA P+     RS NLST+ ++A+++
Sbjct:    4 HVVLVHPEIHWNTGNAGRTCLATGATLHLIEPLGFSLGEREVRRAGLDYWEHVDVRVWPDWDTFEA-QLPTLGEPYFFSTK-----ATQLFWDAPLGEPDHIVLIFGRETAGLPEPVRTRWA------HRMVAMPITSPHVRSLNLSTSVAVAIYE 147          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A355EX74_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A355EX74_9BACT)

HSP 1 Score: 134 bits (336), Expect = 9.540e-37
Identity = 72/155 (46.45%), Postives = 95/155 (61.29%), Query Frame = 0
Query:    7 LHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEGKIVLIFGSEVDGFD-SIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTTASMALWDAYK 160
            L +V V P+IHWNTGN GRTCL  GA LHLV P+GFSL ER+VRRAGLDYW  VD  V+ +W  F    + +LG    FFT    +   ++ +P   + VL+FG E  G   +IR     D   ER V+ PM+D   RS NLST+ ++AL++  +
Sbjct:    6 LQVVLVEPEIHWNTGNAGRTCLAAGARLHLVEPLGFSLGEREVRRAGLDYWPRVDPRVWPNWATFEEA-LPELGEP-FFFTSEAPRTFWDVAYPP--RPVLVFGRESVGLSRAIR-----DRWSERLVSIPMLDPALRSLNLSTSVALALYEVLR 151          
BLAST of Gcaud1727.t1 vs. uniprot
Match: A0A2V7YV85_9BACT (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7YV85_9BACT)

HSP 1 Score: 133 bits (335), Expect = 1.350e-36
Identity = 73/152 (48.03%), Postives = 93/152 (61.18%), Query Frame = 0
Query:    7 LHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVRRAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWPTEGKIVLIFGSEVDGF-DSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTTASMALWD 157
            LH+V V P+IHWNTGN GRTCL +GA LHLVGP+GF L ERQVRRAGLDYW  VD  ++D W  F   ++  LG    FF+   E+    +++P   + VLIFG E  G    IR         ER V  PM+D   RS NLST+ ++A ++
Sbjct:    6 LHVVLVEPEIHWNTGNAGRTCLAVGARLHLVGPLGFFLSERQVRRAGLDYWPRVDPVIWDRWADFEP-EIPRLGEP-FFFSAEAERDFWSVEYPE--RTVLIFGKESVGLAPEIRARHP-----ERLVRIPMIDPEIRSLNLSTSVALAAYE 148          
The following BLAST results are available for this feature:
BLAST of Gcaud1727.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEW0_9FLOR1.470e-9878.24Putative tRNA (Cytidine(34)-2'-O)-methyltransferas... [more]
A0A7S0ZGK6_9RHOD2.780e-6358.02Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6NP17_PORUM1.950e-5353.25SpoU_methylase domain-containing protein n=1 Tax=P... [more]
A0A7S0BL64_9RHOD3.770e-5154.94Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1E3Y7K4_9BACT3.380e-4244.64Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
A0A7J7IL86_9RHOD3.590e-4042.41SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A521TEG9_9BACT9.460e-3946.84Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
C1ADV2_GEMAT5.440e-3846.79Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
A0A355EX74_9BACT9.540e-3746.45Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
A0A2V7YV85_9BACT1.350e-3648.03Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 7..155
e-value: 7.3E-22
score: 78.1
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePIRSFPIRSF029256SpoU_TrmHcoord: 6..168
e-value: 1.3E-39
score: 133.2
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePANTHERPTHR42971TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASEcoord: 4..163
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferaseHAMAPMF_01885tRNA_methyltr_TrmLcoord: 7..165
score: 26.121639
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 3..173
e-value: 6.9E-31
score: 109.0
NoneNo IPR availablePIRSRPIRSR029256-1PIRSR029256-1coord: 7..160
e-value: 1.5E-33
score: 113.3
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 7..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_994_length_15385_cov_4.714921contigNODE_994_length_15385_cov_4.714921:13408..14060 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1Gcaud1727.t1Gracilaria caudata M_176_S67 malemRNANODE_994_length_15385_cov_4.714921 13408..14060 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1727.t1 ID=Gcaud1727.t1|Name=Gcaud1727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MDGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVR
RAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWP
TEGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTT
ASMALWDAYKCVTVRGNSRRGHNIAQIDNSVALR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001537SpoU_MeTrfase
IPR016914tRNA_cyt/urid_MeTfrase
IPR029026tRNA_m1G_MTases_N
IPR029028Alpha/beta_knot_MTases