Gcaud1725.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1725.t1
Unique NameGcaud1725.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_994_length_15385_cov_4.714921contigNODE_994_length_15385_cov_4.714921:3389..4366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog631362.Thi970DRAFT_00354
PFAMsSulfotransfer_1
Max annot lvl135613|Chromatiales
Evalue4.4e-19
EggNOG OGs28NPB@1|root,2ZBP9@2|Bacteria,1R3HY@1224|Proteobacteria,1T68A@1236|Gammaproteobacteria,1WZQG@135613|Chromatiales
DescriptionPFAM Sulfotransferase domain
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1725Gcaud1725Gracilaria caudata M_176_S67 malegeneNODE_994_length_15385_cov_4.714921 3389..4366 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1725.t1.stop1Gcaud1725.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_994_length_15385_cov_4.714921 3389..3391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1725.t1.CDS1Gcaud1725.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_994_length_15385_cov_4.714921 3389..4366 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1725.t1.exon1Gcaud1725.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_994_length_15385_cov_4.714921 3389..4366 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1725.t1.start1Gcaud1725.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_994_length_15385_cov_4.714921 4364..4366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1725.t1Gcaud1725.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_994_length_15385_cov_4.714921 3389..4366 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1725.t1 ID=Gcaud1725.t1|Name=Gcaud1725.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp
MTTLGVRSDDEVHRAALDALHAIYRMRTKWPIATGLQMYKPRPSDVIVAT
NPKAGTTLVQHLLYQIVVAAGGAPDFDPDGTQFKDINDVAPWVDYGPQTG
TFSCDTSPRLFKTHSAASKFDLNVGRFVFCARDPNNFVGSLLDFIFDHAT
GGSVTDTAVRERTFHLYVRHELLGVPLPPNEKLFANVQRSFPLWFRVLQS
WTERARDNILVVFYEDVVRDLPHTIRTLTAFLDVELSEDDVRRVASRCTR
EAMLNDARFVCRAEGRLFGLEGAKKVLPVDRNGFNRFSLDDEEQALLADL
LEEYIGYRSYADWRTRVLVNARETT*
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spliced messenger RNA

>Gcaud1725.t1 ID=Gcaud1725.t1|Name=Gcaud1725.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:3389..4366- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACACTCGGCGTCCGTTCGGACGACGAAGTGCACCGCGCCGCGCT
CGACGCGCTTCACGCCATTTACCGCATGCGCACCAAATGGCCCATCGCAA
CGGGCCTGCAGATGTACAAACCGCGCCCATCCGACGTTATCGTTGCAACG
AACCCCAAAGCAGGCACCACGCTCGTTCAGCACCTGCTTTATCAGATCGT
CGTGGCAGCTGGCGGCGCACCTGATTTCGACCCGGATGGTACGCAGTTCA
AGGATATCAACGACGTCGCGCCGTGGGTCGACTACGGCCCACAGACGGGT
ACGTTCAGCTGTGACACGTCTCCGCGTCTATTCAAGACGCATAGCGCTGC
GTCCAAGTTCGACCTGAATGTCGGACGCTTCGTGTTCTGTGCTCGTGATC
CGAACAACTTTGTTGGTAGTCTGCTAGACTTCATATTCGACCACGCGACG
GGTGGCTCCGTCACTGACACCGCTGTACGCGAGCGCACCTTCCATCTGTA
TGTGCGACACGAACTTCTTGGAGTACCCCTACCGCCCAATGAGAAGCTAT
TCGCCAATGTGCAACGAAGTTTCCCCCTATGGTTTAGAGTCCTGCAGAGC
TGGACGGAGAGGGCGCGTGATAACATACTGGTGGTGTTCTACGAGGACGT
CGTGCGCGACCTGCCACACACCATTCGCACATTGACAGCGTTCTTGGACG
TAGAGCTCTCGGAGGACGACGTGAGGCGCGTTGCGTCGCGTTGCACGAGA
GAGGCCATGCTGAATGATGCGCGCTTCGTGTGCCGTGCGGAAGGACGATT
ATTCGGCCTCGAAGGGGCGAAAAAGGTACTGCCCGTTGACCGAAACGGGT
TTAACCGCTTCTCACTTGACGATGAAGAACAAGCGCTGCTGGCGGATCTT
CTGGAAGAGTACATAGGATATCGGTCATACGCCGATTGGAGAACAAGAGT
ACTGGTAAACGCAAGAGAAACCACTTAG
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protein sequence of Gcaud1725.t1

>Gcaud1725.t1 ID=Gcaud1725.t1|Name=Gcaud1725.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=326bp
MTTLGVRSDDEVHRAALDALHAIYRMRTKWPIATGLQMYKPRPSDVIVAT
NPKAGTTLVQHLLYQIVVAAGGAPDFDPDGTQFKDINDVAPWVDYGPQTG
TFSCDTSPRLFKTHSAASKFDLNVGRFVFCARDPNNFVGSLLDFIFDHAT
GGSVTDTAVRERTFHLYVRHELLGVPLPPNEKLFANVQRSFPLWFRVLQS
WTERARDNILVVFYEDVVRDLPHTIRTLTAFLDVELSEDDVRRVASRCTR
EAMLNDARFVCRAEGRLFGLEGAKKVLPVDRNGFNRFSLDDEEQALLADL
LEEYIGYRSYADWRTRVLVNARETT*
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mRNA from alignment at NODE_994_length_15385_cov_4.714921:3389..4366-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1725.t1 ID=Gcaud1725.t1|Name=Gcaud1725.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:3389..4366- (Gracilaria caudata M_176_S67 male)
ATGACCACACTCGGCGTCCGTTCGGACGACGAAGTGCACCGCGCCGCGCT
CGACGCGCTTCACGCCATTTACCGCATGCGCACCAAATGGCCCATCGCAA
CGGGCCTGCAGATGTACAAACCGCGCCCATCCGACGTTATCGTTGCAACG
AACCCCAAAGCAGGCACCACGCTCGTTCAGCACCTGCTTTATCAGATCGT
CGTGGCAGCTGGCGGCGCACCTGATTTCGACCCGGATGGTACGCAGTTCA
AGGATATCAACGACGTCGCGCCGTGGGTCGACTACGGCCCACAGACGGGT
ACGTTCAGCTGTGACACGTCTCCGCGTCTATTCAAGACGCATAGCGCTGC
GTCCAAGTTCGACCTGAATGTCGGACGCTTCGTGTTCTGTGCTCGTGATC
CGAACAACTTTGTTGGTAGTCTGCTAGACTTCATATTCGACCACGCGACG
GGTGGCTCCGTCACTGACACCGCTGTACGCGAGCGCACCTTCCATCTGTA
TGTGCGACACGAACTTCTTGGAGTACCCCTACCGCCCAATGAGAAGCTAT
TCGCCAATGTGCAACGAAGTTTCCCCCTATGGTTTAGAGTCCTGCAGAGC
TGGACGGAGAGGGCGCGTGATAACATACTGGTGGTGTTCTACGAGGACGT
CGTGCGCGACCTGCCACACACCATTCGCACATTGACAGCGTTCTTGGACG
TAGAGCTCTCGGAGGACGACGTGAGGCGCGTTGCGTCGCGTTGCACGAGA
GAGGCCATGCTGAATGATGCGCGCTTCGTGTGCCGTGCGGAAGGACGATT
ATTCGGCCTCGAAGGGGCGAAAAAGGTACTGCCCGTTGACCGAAACGGGT
TTAACCGCTTCTCACTTGACGATGAAGAACAAGCGCTGCTGGCGGATCTT
CTGGAAGAGTACATAGGATATCGGTCATACGCCGATTGGAGAACAAGAGT
ACTGGTAAACGCAAGAGAAACCACTTAG
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Coding sequence (CDS) from alignment at NODE_994_length_15385_cov_4.714921:3389..4366-

>Gcaud1725.t1 ID=Gcaud1725.t1|Name=Gcaud1725.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=978bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:3389..4366- (Gracilaria caudata M_176_S67 male)
ATGACCACACTCGGCGTCCGTTCGGACGACGAAGTGCACCGCGCCGCGCT
CGACGCGCTTCACGCCATTTACCGCATGCGCACCAAATGGCCCATCGCAA
CGGGCCTGCAGATGTACAAACCGCGCCCATCCGACGTTATCGTTGCAACG
AACCCCAAAGCAGGCACCACGCTCGTTCAGCACCTGCTTTATCAGATCGT
CGTGGCAGCTGGCGGCGCACCTGATTTCGACCCGGATGGTACGCAGTTCA
AGGATATCAACGACGTCGCGCCGTGGGTCGACTACGGCCCACAGACGGGT
ACGTTCAGCTGTGACACGTCTCCGCGTCTATTCAAGACGCATAGCGCTGC
GTCCAAGTTCGACCTGAATGTCGGACGCTTCGTGTTCTGTGCTCGTGATC
CGAACAACTTTGTTGGTAGTCTGCTAGACTTCATATTCGACCACGCGACG
GGTGGCTCCGTCACTGACACCGCTGTACGCGAGCGCACCTTCCATCTGTA
TGTGCGACACGAACTTCTTGGAGTACCCCTACCGCCCAATGAGAAGCTAT
TCGCCAATGTGCAACGAAGTTTCCCCCTATGGTTTAGAGTCCTGCAGAGC
TGGACGGAGAGGGCGCGTGATAACATACTGGTGGTGTTCTACGAGGACGT
CGTGCGCGACCTGCCACACACCATTCGCACATTGACAGCGTTCTTGGACG
TAGAGCTCTCGGAGGACGACGTGAGGCGCGTTGCGTCGCGTTGCACGAGA
GAGGCCATGCTGAATGATGCGCGCTTCGTGTGCCGTGCGGAAGGACGATT
ATTCGGCCTCGAAGGGGCGAAAAAGGTACTGCCCGTTGACCGAAACGGGT
TTAACCGCTTCTCACTTGACGATGAAGAACAAGCGCTGCTGGCGGATCTT
CTGGAAGAGTACATAGGATATCGGTCATACGCCGATTGGAGAACAAGAGT
ACTGGTAAACGCAAGAGAAACCACTTAG
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