Gcaud8739.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8739.t1
Unique NameGcaud8739.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_122_length_46896_cov_4.534024contigNODE_122_length_46896_cov_4.534024:5386..10126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8739Gcaud8739Gracilaria caudata M_176_S67 malegeneNODE_122_length_46896_cov_4.534024 5386..10126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8739.t1Gcaud8739.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_122_length_46896_cov_4.534024 5386..10126 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8739.t1.start1Gcaud8739.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_122_length_46896_cov_4.534024 5386..5388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8739.t1.CDS1Gcaud8739.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_122_length_46896_cov_4.534024 5386..6471 +
Gcaud8739.t1.CDS2Gcaud8739.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_122_length_46896_cov_4.534024 9741..9861 +
Gcaud8739.t1.CDS3Gcaud8739.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_122_length_46896_cov_4.534024 9957..10126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8739.t1.exon1Gcaud8739.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_122_length_46896_cov_4.534024 5386..6471 +
Gcaud8739.t1.exon2Gcaud8739.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_122_length_46896_cov_4.534024 9741..9861 +
Gcaud8739.t1.exon3Gcaud8739.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_122_length_46896_cov_4.534024 9957..10126 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8739.t1.intron1Gcaud8739.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_122_length_46896_cov_4.534024 6472..9740 +
Gcaud8739.t1.intron2Gcaud8739.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_122_length_46896_cov_4.534024 9862..9956 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8739.t1.stop1Gcaud8739.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_122_length_46896_cov_4.534024 10124..10126 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8739.t1 ID=Gcaud8739.t1|Name=Gcaud8739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp
MPAPAPVCLTNLPPEILDAIVRKLFQADSPQCAVSFWQSSALSFAASHVE
LFRSVVRVASAFVQHALLFNSVRDILVSVRMRGLSLCYSSSSDDYDDDYG
STNEANGASQQRDCSSDLSAMRETATVYSPIVVYPPSVDAEQRLHGEQYP
HVTERAVEEQHDHDADSSELDGIQAGLASLELRAVCESVTTDVQIDGSHH
SEQQQYVPFPDDYDSEGPHGEEDGDTLSPALAQYDEEAQQFDAVQDSYRG
YDANESLSGSDCGEYTVSDFEEDSVSLHEQFEDECCAYSEQDEVDDANDT
GFDREDEYDSDDANRQVVYDDGDDGVDFDNVAEDEFDNGALDHFDDADVD
SVADDIAEDDGDMRKETPFVSPMEQPMMPIAIRVSERQIRSARHPVFLIL
SNVVLIRQIANEFLFLVALVFHRAHSQSHLFVRGIVELYAPIFEKMMVRV
TLVQYSQR*
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spliced messenger RNA

>Gcaud8739.t1 ID=Gcaud8739.t1|Name=Gcaud8739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:5386..10126+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCACCCGCGCCCGTCTGTCTGACAAACCTGCCCCCAGAGATATT
GGACGCTATTGTGCGCAAACTGTTCCAGGCCGACTCTCCACAATGCGCCG
TCTCTTTTTGGCAGTCCTCAGCACTTTCGTTCGCCGCGTCGCACGTTGAG
TTGTTTCGGTCCGTTGTGCGTGTCGCGTCCGCTTTCGTTCAACACGCGCT
GCTTTTCAACAGTGTGCGCGATATTCTGGTATCTGTGCGTATGCGAGGGT
TGAGTCTATGTTACTCGAGCAGTTCTGACGATTACGATGACGATTATGGG
TCGACGAATGAAGCGAACGGTGCCTCGCAGCAACGTGATTGTTCTTCTGA
CTTGAGCGCTATGCGTGAAACGGCGACCGTTTATTCGCCGATTGTGGTGT
ATCCTCCGTCGGTGGACGCTGAGCAGCGTCTTCATGGCGAACAATACCCC
CATGTTACCGAGCGAGCGGTTGAAGAGCAGCACGACCATGATGCTGACTC
CAGCGAGTTGGATGGGATTCAGGCCGGTCTTGCTTCACTTGAACTGCGTG
CTGTATGTGAATCGGTGACGACAGATGTGCAGATCGATGGCAGTCATCAC
AGTGAGCAACAGCAGTACGTTCCTTTTCCTGATGATTATGACAGTGAAGG
TCCACATGGGGAAGAAGATGGCGACACATTGAGCCCTGCTCTTGCCCAAT
ATGATGAAGAAGCTCAGCAGTTTGACGCAGTTCAAGATTCGTATCGAGGG
TATGACGCAAACGAGTCTCTTAGTGGCTCGGACTGTGGGGAATATACGGT
TAGTGATTTTGAGGAGGATTCTGTCTCGCTTCATGAACAGTTTGAGGATG
AGTGTTGCGCGTATTCTGAACAAGATGAGGTTGACGACGCAAATGACACT
GGTTTTGACCGCGAGGACGAATACGATAGCGACGATGCAAATAGACAAGT
CGTTTACGATGACGGGGATGATGGTGTTGATTTCGACAATGTGGCTGAGG
ATGAATTTGACAATGGCGCTTTAGATCACTTtgacgatgccgacgttgac
agtgtcgctgatgatatcgccgaagatgatggtgacATGCGCAAGGAAAC
TCCATTTGTGAGCCCGATGGAACAACCAATGATGCCGATTGCAATCCGTG
TGTCGGAGAGGCAGATAAGATCTGCGAGGCATCCGGTCTTCCTAATTCTT
TCAAATGTTGTCCTAATTCGTCAAATTGCAAACGAATTCTTATTCCTGGT
CGCCTTGGTGTTCCACAGAGCTCACTCCCAGTCTCATTTGTTTGTTCGAG
GAATTGTGGAACTGTATGCGCCGATATTCGAAAAAATGATGGTACGAGTA
ACGCTTGTACAGTATTCTCAGCGCTGA
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protein sequence of Gcaud8739.t1

>Gcaud8739.t1 ID=Gcaud8739.t1|Name=Gcaud8739.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=459bp
MPAPAPVCLTNLPPEILDAIVRKLFQADSPQCAVSFWQSSALSFAASHVE
LFRSVVRVASAFVQHALLFNSVRDILVSVRMRGLSLCYSSSSDDYDDDYG
STNEANGASQQRDCSSDLSAMRETATVYSPIVVYPPSVDAEQRLHGEQYP
HVTERAVEEQHDHDADSSELDGIQAGLASLELRAVCESVTTDVQIDGSHH
SEQQQYVPFPDDYDSEGPHGEEDGDTLSPALAQYDEEAQQFDAVQDSYRG
YDANESLSGSDCGEYTVSDFEEDSVSLHEQFEDECCAYSEQDEVDDANDT
GFDREDEYDSDDANRQVVYDDGDDGVDFDNVAEDEFDNGALDHFDDADVD
SVADDIAEDDGDMRKETPFVSPMEQPMMPIAIRVSERQIRSARHPVFLIL
SNVVLIRQIANEFLFLVALVFHRAHSQSHLFVRGIVELYAPIFEKMMVRV
TLVQYSQR*
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mRNA from alignment at NODE_122_length_46896_cov_4.534024:5386..10126+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8739.t1 ID=Gcaud8739.t1|Name=Gcaud8739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=4741bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:5386..10126+ (Gracilaria caudata M_176_S67 male)
ATGCCCGCACCCGCGCCCGTCTGTCTGACAAACCTGCCCCCAGAGATATT
GGACGCTATTGTGCGCAAACTGTTCCAGGCCGACTCTCCACAATGCGCCG
TCTCTTTTTGGCAGTCCTCAGCACTTTCGTTCGCCGCGTCGCACGTTGAG
TTGTTTCGGTCCGTTGTGCGTGTCGCGTCCGCTTTCGTTCAACACGCGCT
GCTTTTCAACAGTGTGCGCGATATTCTGGTATCTGTGCGTATGCGAGGGT
TGAGTCTATGTTACTCGAGCAGTTCTGACGATTACGATGACGATTATGGG
TCGACGAATGAAGCGAACGGTGCCTCGCAGCAACGTGATTGTTCTTCTGA
CTTGAGCGCTATGCGTGAAACGGCGACCGTTTATTCGCCGATTGTGGTGT
ATCCTCCGTCGGTGGACGCTGAGCAGCGTCTTCATGGCGAACAATACCCC
CATGTTACCGAGCGAGCGGTTGAAGAGCAGCACGACCATGATGCTGACTC
CAGCGAGTTGGATGGGATTCAGGCCGGTCTTGCTTCACTTGAACTGCGTG
CTGTATGTGAATCGGTGACGACAGATGTGCAGATCGATGGCAGTCATCAC
AGTGAGCAACAGCAGTACGTTCCTTTTCCTGATGATTATGACAGTGAAGG
TCCACATGGGGAAGAAGATGGCGACACATTGAGCCCTGCTCTTGCCCAAT
ATGATGAAGAAGCTCAGCAGTTTGACGCAGTTCAAGATTCGTATCGAGGG
TATGACGCAAACGAGTCTCTTAGTGGCTCGGACTGTGGGGAATATACGGT
TAGTGATTTTGAGGAGGATTCTGTCTCGCTTCATGAACAGTTTGAGGATG
AGTGTTGCGCGTATTCTGAACAAGATGAGGTTGACGACGCAAATGACACT
GGTTTTGACCGCGAGGACGAATACGATAGCGACGATGCAAATAGACAAGT
CGTTTACGATGACGGGGATGATGGTGTTGATTTCGACAATGTGGCTGAGG
ATGAATTTGACAATGGCGCTTTAGATCACTTtgacgatgccgacgttgac
agtgtcgctgatgatatcgccgaagatgatggtgacgtagagatagacga
ttgttgtgaagaccacgactacgatgacggcgactgtgacgagtatgatg
actttgactacggcgatgattacggtgatgactacggcgatgactacggc
gatgacaatggcgacgattacagcgatgacTACTGAGCCACGCGATGCAT
CTTGTAAACATGGCCAACCGTTCTTGATCGGTTAGTGATAACTTGGCCAT
TTCTGCTGCGCGGCTTCCGCGTGGAATGCGGTGTGCGCGACCTTCGCGGT
TGTCTGTTCCGATACAGCGCATTCCACCCACAGCCTGTATGCCATCCATT
GCTCAGTCGATATCGATGCGTTTGTGTGCGACCTACGGCTGCGCTCGTAT
CTTACATATCGAGTGCAGCAGGTGCAGTGCCGCTATCTGGTGGCAAATCC
CCTTTTCGCCAGTTCAAATTAGTCCTTACAGAAGTACTTGAATGCTTACA
CATGAATCGCAGCAAATAATATTTCAAATTTCCAAACATTTATATAAATC
GCCCATAAATCTTTTTCAAAAGTTGGGCTAAAGCAAGTAATCGACATGAC
ACATTGTGTACACGCAAACCCGTTACATTTCTTCCAACGGTACCGAAGGT
GGAGGGATACCACTTGTAATTGCGAGCCAAGATTTTCTCGACCGCGACCA
GAGGTAGCGCTACCCATTTCTCAAAAGGATGTTGTACGTCGATCACCATG
ATGAGGCACAATCGTCTTAGCCTGCCGTTCTCACTTCCGACAAGTGATCC
TGGCCTTCTCCCTGACTGACTACAGACTCCACGTGAAGTCACCGATGCGC
TGTCAAACTTTGTCGCTTGATGAAAATAGAGAAAGGGCCATGAGATCATT
TCAACCGCGCAGCGAAGAGTCTCTTATTTCGTACTGCCGTTATCCGACTT
AAGCTTTATTGTTGTCCACAAGTCCTATCATTGATTATCTACGGTGCCTT
ATTCCTGGCCTTTGGGGCAAGCTGTACACAACTTTCTTACTAATGACTTG
GATATTTTGAAAAGTGTACCGTTCGGAGTGAGGCCTCCTCCAAGATGGCG
AGGAAAAACTGTTGTTCGAAACCCAAGAAAGGGGACGCATCGGCCGAGAT
TCGAACAGTTTTATTCCTCTTTTTCCACTTACAGTCGTTACGCCCTTATT
ATACCGGTGTGCACCAAGCTTATGCTTTTGTCTAACAGCGACACAAGCAA
TAGCATATCTACATTTTAAAACGTAGACCGCTTGGAGTGGGGCCATGCTT
CCTCCAAGAGCAACGTGGAGAAAGATTGTGCGGAAGAAAAGAAATGGGAG
CCATCGGCCTGAAGGTGAAAAATTCTGGTTCCCTTTTGCTCAAGCGACAT
ATTCGGGCCTTTTCATACGGGCCTTGAGCATGAGTGTACCTTTGTCGAAC
TGCGTCCCAGGCAGAAAAGCAATATTTCTGTGCTGACAGCGGCCATCAGC
GCACATGAATCTCGACAGTCCCGCCCATGGGACTGTTTGCTGAGAGAATG
TCACCAACTGTTTACGTGGCTTTTTCAATCTACAACCGCCCTGGCCCGCG
TAGTGCTGAACAACATCCTAATTCACGTCTTTCAATGCGCTGTAGAGAGG
GTGATTATAGAGTGATTATAGGGTGATTGATGACGGCCAGTCCCATTGAA
CTCTCTCGATTCCCGAGGTTTTCTCCATAGAATTCTAGGTTATGGTCCTT
GATAGATAGATACAGCCCCTGTATTCAGAGTAATATCATTCAATTGCGAT
TCGATGCAGCTGTAAACATGGGGTGAGAGCTTTTGTAACGGTTGGTGATC
ACTGGGATGCAGAACAGGAATAAAAACCCGCACCTTCGATACTGCGAGAA
AACACGCTGCAAGCGGTGTTGTCCCCAGTTCCGGCTCACGGCAGACTACG
CAGTTCGCCGCAGGTGCACAGTTTCTCTCAGTCAGGTGTCTCGTCACAAC
TAGGAACCACTTCGGCATTAATCATGGCTTCTCCCGCGTTTCTAATCCTC
GCATTTTCCCTATCATTCATTTGCACACATACCGCAGAGGCTCGCCATCA
AACCGCTCCAGATTTGAACTCTTTTGCTCGTCCCGTTTCTTATGCCGAAC
CTACTCCCAGTCCTGGTGTGAACTGCGTCTCACCAAACAAACTTGGAGCC
ACTCATACCCCCACACCGTCCTCCTTCGCGCCACACCCCAAAGCAAACAC
TGAGCACTCTTCTCATCCGAGAACATCCTCCTCTAAAGCTCCGTCGACCG
TCACCCCCGTTCCGACAGAATCTACAACCAAGCCTGCCGGCCCGAGAGCA
CAGATCGCAAGCTTGATTCAGCTGCCATCTAAACCCGCATCAGCTGCGTC
TCCAGGAACATCATCCCATGCACCTCCGTCGACAAGCAGCTCCACCCCGG
CCGAGACCACGAGCGAAGCCCCAAGCGAACCTACTAACAATCCTTCCCAC
ATCATGGGAGCATTCACAAACATCATGCAACTGCCGTCTAATCCGTTATC
AATCCTTACTCCAGGAACACCCACCACATCGGCTCCGCcgaccaggacta
cgaccccgcctacgactacagccagtaccacgacccccagtacaactaca
accGTTCCCTCGACTACATCAGTAACGAAGGAAACCTCCGAATCTGACAC
CTCCGAATCTGACACCTCGACGGAAAACTGGCAACGGGAATCAACCTCCA
CTGAAGATACGTCCACGACTGCTCctccaaccacaactaccacctcggcc
acgaatcaggatacgactgcgaccactacacctccgactacaactgctgc
gacgaccacagctacaactGCCCCGCCTTCCACGCAATTCCCGCCTGTCC
CGCTTTCCCCAACGACTTCCCCACCAACGACCACAGCGCAGGCTCCGCCC
ACCACTCAGCCGCCCACTACACAGCCTACAACCACCACACTGCCACCCAC
CACTCAGCCGCCCACTACACAGCCTACAACCACCAGACTGTCACCCACTA
CTCAGCCGCCCACTACACAGCCTACAACCACCACACTGCCACCCACCACT
CAGACGCCCACTACACAGCCTACAACCACCACTCTGCCACCCACCACTCA
GCCGCCCACTACACAGCCTACAACCACCACACTGCCACCTACCACTCAGC
CGCCCACTACACAGCCTCCAACCACCACACTGCCTCCCACCACTCAGCCG
CCCACAACTGCACCGCCGTGTCAATGTCCGAACTGTTTTGTTTGTACTGG
AGTAGATGCGCAAGGAAACTCCATTTGTGAGCCCGATGGAACAACCAATG
ATGCCGATTGCAATCCGTGTGTCGGAGAGGCAGATAAGATCTGCGAGGCA
TCCGGTCTTCCTAATTCTTTCAAATGGTAAGTTGAAATCATTCCCTAACT
ATTCATATCGTTCCAAACAAGATGAACTAACTTGTGCACCTTTTCTTCTT
ATCCAAACCTCACCTGTACAGTTGTCCTAATTCGTCAAATTGCAAACGAA
TTCTTATTCCTGGTCGCCTTGGTGTTCCACAGAGCTCACTCCCAGTCTCA
TTTGTTTGTTCGAGGAATTGTGGAACTGTATGCGCCGATATTCGAAAAAA
TGATGGTACGAGTAACGCTTGTACAGTATTCTCAGCGCTGA
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Coding sequence (CDS) from alignment at NODE_122_length_46896_cov_4.534024:5386..10126+

>Gcaud8739.t1 ID=Gcaud8739.t1|Name=Gcaud8739.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1377bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:5386..10126+ (Gracilaria caudata M_176_S67 male)
ATGCCCGCACCCGCGCCCGTCTGTCTGACAAACCTGCCCCCAGAGATATT
GGACGCTATTGTGCGCAAACTGTTCCAGGCCGACTCTCCACAATGCGCCG
TCTCTTTTTGGCAGTCCTCAGCACTTTCGTTCGCCGCGTCGCACGTTGAG
TTGTTTCGGTCCGTTGTGCGTGTCGCGTCCGCTTTCGTTCAACACGCGCT
GCTTTTCAACAGTGTGCGCGATATTCTGGTATCTGTGCGTATGCGAGGGT
TGAGTCTATGTTACTCGAGCAGTTCTGACGATTACGATGACGATTATGGG
TCGACGAATGAAGCGAACGGTGCCTCGCAGCAACGTGATTGTTCTTCTGA
CTTGAGCGCTATGCGTGAAACGGCGACCGTTTATTCGCCGATTGTGGTGT
ATCCTCCGTCGGTGGACGCTGAGCAGCGTCTTCATGGCGAACAATACCCC
CATGTTACCGAGCGAGCGGTTGAAGAGCAGCACGACCATGATGCTGACTC
CAGCGAGTTGGATGGGATTCAGGCCGGTCTTGCTTCACTTGAACTGCGTG
CTGTATGTGAATCGGTGACGACAGATGTGCAGATCGATGGCAGTCATCAC
AGTGAGCAACAGCAGTACGTTCCTTTTCCTGATGATTATGACAGTGAAGG
TCCACATGGGGAAGAAGATGGCGACACATTGAGCCCTGCTCTTGCCCAAT
ATGATGAAGAAGCTCAGCAGTTTGACGCAGTTCAAGATTCGTATCGAGGG
TATGACGCAAACGAGTCTCTTAGTGGCTCGGACTGTGGGGAATATACGGT
TAGTGATTTTGAGGAGGATTCTGTCTCGCTTCATGAACAGTTTGAGGATG
AGTGTTGCGCGTATTCTGAACAAGATGAGGTTGACGACGCAAATGACACT
GGTTTTGACCGCGAGGACGAATACGATAGCGACGATGCAAATAGACAAGT
CGTTTACGATGACGGGGATGATGGTGTTGATTTCGACAATGTGGCTGAGG
ATGAATTTGACAATGGCGCTTTAGATCACTTtgacgatgccgacgttgac
agtgtcgctgatgatatcgccgaagatgatggtgacATGCGCAAGGAAAC
TCCATTTGTGAGCCCGATGGAACAACCAATGATGCCGATTGCAATCCGTG
TGTCGGAGAGGCAGATAAGATCTGCGAGGCATCCGGTCTTCCTAATTCTT
TCAAATGTTGTCCTAATTCGTCAAATTGCAAACGAATTCTTATTCCTGGT
CGCCTTGGTGTTCCACAGAGCTCACTCCCAGTCTCATTTGTTTGTTCGAG
GAATTGTGGAACTGTATGCGCCGATATTCGAAAAAATGATGGTACGAGTA
ACGCTTGTACAGTATTCTCAGCGCTGA
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