Gcaud1325.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1325.t1
Unique Name	Gcaud1325.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	815

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_983_length_15517_cov_4.713536	contig	NODE_983_length_15517_cov_4.713536:874..3318 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1325	Gcaud1325	Gracilaria caudata M_176_S67 male	gene	NODE_983_length_15517_cov_4.713536 874..3318 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1325.t1.stop1	Gcaud1325.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_983_length_15517_cov_4.713536 874..876 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1325.t1.CDS1	Gcaud1325.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_983_length_15517_cov_4.713536 874..3318 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1325.t1.exon1	Gcaud1325.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_983_length_15517_cov_4.713536 874..3318 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1325.t1.start1	Gcaud1325.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_983_length_15517_cov_4.713536 3316..3318 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1325.t1	Gcaud1325.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_983_length_15517_cov_4.713536 874..3318 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_983_length_15517_cov_4.713536:874..3318-
coding sequence from alignment at NODE_983_length_15517_cov_4.713536:874..3318-

mRNA sequence

>Gcaud1325.t1 ID=Gcaud1325.t1|Name=Gcaud1325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=815bp
MRRTQTPEPFRPFFTASTDELPPIEKQVVECLKHLQRDIPSIPSGDTIIA
TIVISALHSVSAWPFSLHAQPRSNQQSEHNRQPLSGDTRDKILEIGSGGW
CDPIKPVSHFSIADFWSCDVSTKSRLFRSDIIQKRWQSKLRSMDLHPVDD
LNLTVPRDGPEEVWSAQSVHPLSGRRIILSYVHDTHSGVEVEKEGDRRPV
RLTPPEATAASRPYFLKSDQCIDLNDLWHDGMKYPTPDGQRNGYAGVIPY
MLPGSAVWHCVPRLRRGYGYPSLEHEELDSILITFAELRSGKRPLAEIDN
VEIEFADDEPYRDLSGVRRLWLMAEATCGMLRDDLIISIQDMAGVALTLM
HYDKLISELHAVASNHSKSSTIERKRKIPCIGHPRGFTTWANLCTVGEGA
RAILKQALAGAGLDEKQIASFQYAKRAFAVKVRLLKFWYALMFAKGPITD
LQNLRFEILEDLAVAPAWEPEDRAMVYFMVEAAVINRVERKIPYEESVKR
FLRAENGGILLLDSVNVRSGPTAMEMTRVQLERIFIYHLAAFFRQTFWLL
TDMVLKVTWLAGQEGPSYLGRFTTSMSKQLYIQAARSWAGHSDEMIVRTA
SEGKTRMVVLLSDKHRLNRYIHVESKTEIIVCSIFFMNEDEYNLALSQFG
KNHFHGEERTFRGNPVLTDTDGQSVQWDKSLTVMCAVDRKGSWVRLNPIQ
RMYQIVVTSKIGAEDGHLAAIRIACDGEGREPVAVSPAHIMSHITSEGGQ
TLFEMRPDQISPDGKNIVDYSFEYDRFWMNFQGEARSTMIDADKQMIDDL
LGNMIISLRTKHWR*

spliced messenger RNA

>Gcaud1325.t1 ID=Gcaud1325.t1|Name=Gcaud1325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at NODE_983_length_15517_cov_4.713536:874..3318- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCACGCAAACCCCAGAGCCCTTCAGGCCCTTCTTTACCGCTTC
CACCGACGAACTCCCTCCCATCGAAAAGCAAGTTGTCGAATGCCTCAAGC
ATCTCCAACGTGACATACCCTCCATCCCCTCCGGCGACACAATAATCGCC
ACTATCGTTATCTCCGCCCTACACTCCGTCAGCGCATGGCCTTTCAGCTT
GCACGCCCAACCCCGATCCAATCAGCAATCTGAACACAATCGTCAACCTC
TCTCCGGGGATACTAGGGACAAAATTCTGGAAATAGGATCCGGCGGCTGG
TGCGATCCGATAAAACCCGTGTCACATTTTTCCATTGCCGATTTCTGGAG
CTGCGATGTGAGCACCAAGAGCAGACTCTTTCGTTCTGATATCATACAGA
AAAGATGGCAGTCTAAACTACGCTCTATGGACCTTCACCCCGTCGATGAT
CTCAACTTGACCGTACCAAGAGATGGCCCAGAGGAGGTGTGGTCCGCGCA
ATCTGTCCATCCTCTCTCTGGCAGGCGTATTATTCTTTCCTACGTCCACG
ACACGCACTCTGGTGTTGAAGTCGAAAAGGAAGGAGATAGGAGACCCGTA
AGACTCACTCCACCTGAGGCTACTGCAGCCTCCCGTCCTTACTTCCTCAA
AAGCGATCAGTGCATCGATCTGAACGATCTCTGGCATGATGGAATGAAGT
ATCCTACTCCAGACGGACAACGTAACGGTTATGCCGGTGTCATCCCGTAC
ATGTTACCTGGCTCTGCAGTCTGGCACTGTGTCCCAAGGCTTCGCAGAGG
TTACGGTTACCCGTCTTTGGAACATGAAGAGCTGGACAGTATCCTCATTA
CCTTCGCAGAGTTAAGATCCGGGAAGAGGCCCCTTGCCGAAATTGACAAC
GTAGAGATTGAGTTTGCAGATGATGAGCCGTATAGAGATTTGTCCGGTGT
GAGAAGGTTATGGCTCATGGCTGAGGCTACCTGTGGAATGTTGAGAGATG
ATCTCATTATCTCAATTCAGGACATGGCGGGCGTAGCCCTCACCTTGATG
CACTACGACAAGCTGATTTCGGAGCTCCATGCAGTGGCCAGCAATCACAG
TAAAAGCTCAACTATCGAAAGGAAGAGGAAAATTCCGTGCATCGGTCACC
CACGGGGGTTCACAACTTGGGCAAATCTGTGTACTGTTGGGGAAGGGGCT
CGCGCGATTCTGAAGCAAGCATTGGCCGGTGCCGGTCTGGACGAGAAACA
GATAGCTTCGTTTCAGTATGCGAAAAGGGCCTTCGCCGTTAAGGTGAGAC
TACTGAAGTTTTGGTACGCTCTGATGTTTGCAAAGGGGCCGATAACGGAT
CTGCAAAACTTAAGGTTCGAAATTCTTGAGGATCTAGCGGTTGCGCCAGC
ATGGGAACCAGAGGACAGAGCCATGGTTTACTTCATGGTCGAAGCGGCTG
TCATCAACCGCGTGGAACGCAAAATTCCGTACGAGGAATCTGTCAAACGT
TTCCTGAGAGCCGAGAATGGTGGCATATTGTTGCTGGACTCTGTCAACGT
GAGATCGGGGCCCACCGCTATGGAGATGACTCGCGTTCAACTTGAGAGGA
TTTTCATCTATCATTTGGCAGCTTTCTTCAGGCAAACATTCTGGTTGTTA
ACGGACATGGTTCTGAAGGTGACGTGGCTGGCTGGACAGGAAGGACCTTC
TTATCTTGGACGTTTCACTACATCTATGTCAAAGCAGCTGTACATCCAGG
CCGCCCGTAGTTGGGCGGGGCATAGCGACGAGATGATTGTGAGAACTGCT
TCTGAAGGAAAGACCCGAATGGTTGTGCTTCTGAGTGATAAGCATCGGTT
GAATAGGTACATCCACGTTGAGTCGAAAACTGAGATTATTGTATGCTCGA
TATTCTTCATGAATGAAGACGAGTATAACTTGGCGTTGTCACAGTTCGGA
AAGAACCACTTTCACGGTGAGGAGCGAACGTTTAGAGGAAACCCCGTACT
GACCGACACCGATGGGCAGTCAGTGCAATGGGACAAGAGCCTTACGGTAA
TGTGTGCCGTAGATCGGAAGGGAAGTTGGGTTCGTCTAAATCCCATACAG
CGCATGTACCAGATTGTGGTAACCAGCAAGATTGGAGCTGAAGATGGGCA
TCTAGCTGCTATCAGAATCGCGTGTGATGGAGAAGGTCGGGAGCCTGTAG
CTGTGAGTCCTGCCCATATCATGAGCCACATCACATCTGAAGGCGGGCAG
ACGTTGTTTGAGATGCGACCAGATCAGATTAGCCCTGACGGAAAGAACAT
TGTTGACTACTCTTTCGAGTATGACAGGTTTTGGATGAATTTTCAAGGCG
AAGCACGATCTACTATGATTGATGCAGACAAGCAGATGATTGATGATCTT
TTGGGCAACATGATCATATCACTAAGAACGAAACATTGGAGATGA

protein sequence of Gcaud1325.t1

>Gcaud1325.t1 ID=Gcaud1325.t1|Name=Gcaud1325.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=815bp
MRRTQTPEPFRPFFTASTDELPPIEKQVVECLKHLQRDIPSIPSGDTIIA
TIVISALHSVSAWPFSLHAQPRSNQQSEHNRQPLSGDTRDKILEIGSGGW
CDPIKPVSHFSIADFWSCDVSTKSRLFRSDIIQKRWQSKLRSMDLHPVDD
LNLTVPRDGPEEVWSAQSVHPLSGRRIILSYVHDTHSGVEVEKEGDRRPV
RLTPPEATAASRPYFLKSDQCIDLNDLWHDGMKYPTPDGQRNGYAGVIPY
MLPGSAVWHCVPRLRRGYGYPSLEHEELDSILITFAELRSGKRPLAEIDN
VEIEFADDEPYRDLSGVRRLWLMAEATCGMLRDDLIISIQDMAGVALTLM
HYDKLISELHAVASNHSKSSTIERKRKIPCIGHPRGFTTWANLCTVGEGA
RAILKQALAGAGLDEKQIASFQYAKRAFAVKVRLLKFWYALMFAKGPITD
LQNLRFEILEDLAVAPAWEPEDRAMVYFMVEAAVINRVERKIPYEESVKR
FLRAENGGILLLDSVNVRSGPTAMEMTRVQLERIFIYHLAAFFRQTFWLL
TDMVLKVTWLAGQEGPSYLGRFTTSMSKQLYIQAARSWAGHSDEMIVRTA
SEGKTRMVVLLSDKHRLNRYIHVESKTEIIVCSIFFMNEDEYNLALSQFG
KNHFHGEERTFRGNPVLTDTDGQSVQWDKSLTVMCAVDRKGSWVRLNPIQ
RMYQIVVTSKIGAEDGHLAAIRIACDGEGREPVAVSPAHIMSHITSEGGQ
TLFEMRPDQISPDGKNIVDYSFEYDRFWMNFQGEARSTMIDADKQMIDDL
LGNMIISLRTKHWR*

mRNA from alignment at NODE_983_length_15517_cov_4.713536:874..3318-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1325.t1 ID=Gcaud1325.t1|Name=Gcaud1325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at NODE_983_length_15517_cov_4.713536:874..3318- (Gracilaria caudata M_176_S67 male)
ATGCGCCGCACGCAAACCCCAGAGCCCTTCAGGCCCTTCTTTACCGCTTC
CACCGACGAACTCCCTCCCATCGAAAAGCAAGTTGTCGAATGCCTCAAGC
ATCTCCAACGTGACATACCCTCCATCCCCTCCGGCGACACAATAATCGCC
ACTATCGTTATCTCCGCCCTACACTCCGTCAGCGCATGGCCTTTCAGCTT
GCACGCCCAACCCCGATCCAATCAGCAATCTGAACACAATCGTCAACCTC
TCTCCGGGGATACTAGGGACAAAATTCTGGAAATAGGATCCGGCGGCTGG
TGCGATCCGATAAAACCCGTGTCACATTTTTCCATTGCCGATTTCTGGAG
CTGCGATGTGAGCACCAAGAGCAGACTCTTTCGTTCTGATATCATACAGA
AAAGATGGCAGTCTAAACTACGCTCTATGGACCTTCACCCCGTCGATGAT
CTCAACTTGACCGTACCAAGAGATGGCCCAGAGGAGGTGTGGTCCGCGCA
ATCTGTCCATCCTCTCTCTGGCAGGCGTATTATTCTTTCCTACGTCCACG
ACACGCACTCTGGTGTTGAAGTCGAAAAGGAAGGAGATAGGAGACCCGTA
AGACTCACTCCACCTGAGGCTACTGCAGCCTCCCGTCCTTACTTCCTCAA
AAGCGATCAGTGCATCGATCTGAACGATCTCTGGCATGATGGAATGAAGT
ATCCTACTCCAGACGGACAACGTAACGGTTATGCCGGTGTCATCCCGTAC
ATGTTACCTGGCTCTGCAGTCTGGCACTGTGTCCCAAGGCTTCGCAGAGG
TTACGGTTACCCGTCTTTGGAACATGAAGAGCTGGACAGTATCCTCATTA
CCTTCGCAGAGTTAAGATCCGGGAAGAGGCCCCTTGCCGAAATTGACAAC
GTAGAGATTGAGTTTGCAGATGATGAGCCGTATAGAGATTTGTCCGGTGT
GAGAAGGTTATGGCTCATGGCTGAGGCTACCTGTGGAATGTTGAGAGATG
ATCTCATTATCTCAATTCAGGACATGGCGGGCGTAGCCCTCACCTTGATG
CACTACGACAAGCTGATTTCGGAGCTCCATGCAGTGGCCAGCAATCACAG
TAAAAGCTCAACTATCGAAAGGAAGAGGAAAATTCCGTGCATCGGTCACC
CACGGGGGTTCACAACTTGGGCAAATCTGTGTACTGTTGGGGAAGGGGCT
CGCGCGATTCTGAAGCAAGCATTGGCCGGTGCCGGTCTGGACGAGAAACA
GATAGCTTCGTTTCAGTATGCGAAAAGGGCCTTCGCCGTTAAGGTGAGAC
TACTGAAGTTTTGGTACGCTCTGATGTTTGCAAAGGGGCCGATAACGGAT
CTGCAAAACTTAAGGTTCGAAATTCTTGAGGATCTAGCGGTTGCGCCAGC
ATGGGAACCAGAGGACAGAGCCATGGTTTACTTCATGGTCGAAGCGGCTG
TCATCAACCGCGTGGAACGCAAAATTCCGTACGAGGAATCTGTCAAACGT
TTCCTGAGAGCCGAGAATGGTGGCATATTGTTGCTGGACTCTGTCAACGT
GAGATCGGGGCCCACCGCTATGGAGATGACTCGCGTTCAACTTGAGAGGA
TTTTCATCTATCATTTGGCAGCTTTCTTCAGGCAAACATTCTGGTTGTTA
ACGGACATGGTTCTGAAGGTGACGTGGCTGGCTGGACAGGAAGGACCTTC
TTATCTTGGACGTTTCACTACATCTATGTCAAAGCAGCTGTACATCCAGG
CCGCCCGTAGTTGGGCGGGGCATAGCGACGAGATGATTGTGAGAACTGCT
TCTGAAGGAAAGACCCGAATGGTTGTGCTTCTGAGTGATAAGCATCGGTT
GAATAGGTACATCCACGTTGAGTCGAAAACTGAGATTATTGTATGCTCGA
TATTCTTCATGAATGAAGACGAGTATAACTTGGCGTTGTCACAGTTCGGA
AAGAACCACTTTCACGGTGAGGAGCGAACGTTTAGAGGAAACCCCGTACT
GACCGACACCGATGGGCAGTCAGTGCAATGGGACAAGAGCCTTACGGTAA
TGTGTGCCGTAGATCGGAAGGGAAGTTGGGTTCGTCTAAATCCCATACAG
CGCATGTACCAGATTGTGGTAACCAGCAAGATTGGAGCTGAAGATGGGCA
TCTAGCTGCTATCAGAATCGCGTGTGATGGAGAAGGTCGGGAGCCTGTAG
CTGTGAGTCCTGCCCATATCATGAGCCACATCACATCTGAAGGCGGGCAG
ACGTTGTTTGAGATGCGACCAGATCAGATTAGCCCTGACGGAAAGAACAT
TGTTGACTACTCTTTCGAGTATGACAGGTTTTGGATGAATTTTCAAGGCG
AAGCACGATCTACTATGATTGATGCAGACAAGCAGATGATTGATGATCTT
TTGGGCAACATGATCATATCACTAAGAACGAAACATTGGAGATGA

Coding sequence (CDS) from alignment at NODE_983_length_15517_cov_4.713536:874..3318-

>Gcaud1325.t1 ID=Gcaud1325.t1|Name=Gcaud1325.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2445bp|location=Sequence derived from alignment at NODE_983_length_15517_cov_4.713536:874..3318- (Gracilaria caudata M_176_S67 male)
ATGCGCCGCACGCAAACCCCAGAGCCCTTCAGGCCCTTCTTTACCGCTTC
CACCGACGAACTCCCTCCCATCGAAAAGCAAGTTGTCGAATGCCTCAAGC
ATCTCCAACGTGACATACCCTCCATCCCCTCCGGCGACACAATAATCGCC
ACTATCGTTATCTCCGCCCTACACTCCGTCAGCGCATGGCCTTTCAGCTT
GCACGCCCAACCCCGATCCAATCAGCAATCTGAACACAATCGTCAACCTC
TCTCCGGGGATACTAGGGACAAAATTCTGGAAATAGGATCCGGCGGCTGG
TGCGATCCGATAAAACCCGTGTCACATTTTTCCATTGCCGATTTCTGGAG
CTGCGATGTGAGCACCAAGAGCAGACTCTTTCGTTCTGATATCATACAGA
AAAGATGGCAGTCTAAACTACGCTCTATGGACCTTCACCCCGTCGATGAT
CTCAACTTGACCGTACCAAGAGATGGCCCAGAGGAGGTGTGGTCCGCGCA
ATCTGTCCATCCTCTCTCTGGCAGGCGTATTATTCTTTCCTACGTCCACG
ACACGCACTCTGGTGTTGAAGTCGAAAAGGAAGGAGATAGGAGACCCGTA
AGACTCACTCCACCTGAGGCTACTGCAGCCTCCCGTCCTTACTTCCTCAA
AAGCGATCAGTGCATCGATCTGAACGATCTCTGGCATGATGGAATGAAGT
ATCCTACTCCAGACGGACAACGTAACGGTTATGCCGGTGTCATCCCGTAC
ATGTTACCTGGCTCTGCAGTCTGGCACTGTGTCCCAAGGCTTCGCAGAGG
TTACGGTTACCCGTCTTTGGAACATGAAGAGCTGGACAGTATCCTCATTA
CCTTCGCAGAGTTAAGATCCGGGAAGAGGCCCCTTGCCGAAATTGACAAC
GTAGAGATTGAGTTTGCAGATGATGAGCCGTATAGAGATTTGTCCGGTGT
GAGAAGGTTATGGCTCATGGCTGAGGCTACCTGTGGAATGTTGAGAGATG
ATCTCATTATCTCAATTCAGGACATGGCGGGCGTAGCCCTCACCTTGATG
CACTACGACAAGCTGATTTCGGAGCTCCATGCAGTGGCCAGCAATCACAG
TAAAAGCTCAACTATCGAAAGGAAGAGGAAAATTCCGTGCATCGGTCACC
CACGGGGGTTCACAACTTGGGCAAATCTGTGTACTGTTGGGGAAGGGGCT
CGCGCGATTCTGAAGCAAGCATTGGCCGGTGCCGGTCTGGACGAGAAACA
GATAGCTTCGTTTCAGTATGCGAAAAGGGCCTTCGCCGTTAAGGTGAGAC
TACTGAAGTTTTGGTACGCTCTGATGTTTGCAAAGGGGCCGATAACGGAT
CTGCAAAACTTAAGGTTCGAAATTCTTGAGGATCTAGCGGTTGCGCCAGC
ATGGGAACCAGAGGACAGAGCCATGGTTTACTTCATGGTCGAAGCGGCTG
TCATCAACCGCGTGGAACGCAAAATTCCGTACGAGGAATCTGTCAAACGT
TTCCTGAGAGCCGAGAATGGTGGCATATTGTTGCTGGACTCTGTCAACGT
GAGATCGGGGCCCACCGCTATGGAGATGACTCGCGTTCAACTTGAGAGGA
TTTTCATCTATCATTTGGCAGCTTTCTTCAGGCAAACATTCTGGTTGTTA
ACGGACATGGTTCTGAAGGTGACGTGGCTGGCTGGACAGGAAGGACCTTC
TTATCTTGGACGTTTCACTACATCTATGTCAAAGCAGCTGTACATCCAGG
CCGCCCGTAGTTGGGCGGGGCATAGCGACGAGATGATTGTGAGAACTGCT
TCTGAAGGAAAGACCCGAATGGTTGTGCTTCTGAGTGATAAGCATCGGTT
GAATAGGTACATCCACGTTGAGTCGAAAACTGAGATTATTGTATGCTCGA
TATTCTTCATGAATGAAGACGAGTATAACTTGGCGTTGTCACAGTTCGGA
AAGAACCACTTTCACGGTGAGGAGCGAACGTTTAGAGGAAACCCCGTACT
GACCGACACCGATGGGCAGTCAGTGCAATGGGACAAGAGCCTTACGGTAA
TGTGTGCCGTAGATCGGAAGGGAAGTTGGGTTCGTCTAAATCCCATACAG
CGCATGTACCAGATTGTGGTAACCAGCAAGATTGGAGCTGAAGATGGGCA
TCTAGCTGCTATCAGAATCGCGTGTGATGGAGAAGGTCGGGAGCCTGTAG
CTGTGAGTCCTGCCCATATCATGAGCCACATCACATCTGAAGGCGGGCAG
ACGTTGTTTGAGATGCGACCAGATCAGATTAGCCCTGACGGAAAGAACAT
TGTTGACTACTCTTTCGAGTATGACAGGTTTTGGATGAATTTTCAAGGCG
AAGCACGATCTACTATGATTGATGCAGACAAGCAGATGATTGATGATCTT
TTGGGCAACATGATCATATCACTAAGAACGAAACATTGGAGATGA