Gcaud1328.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1328.t1
Unique NameGcaud1328.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_983_length_15517_cov_4.713536contigNODE_983_length_15517_cov_4.713536:13148..13639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1328Gcaud1328Gracilaria caudata M_176_S67 malegeneNODE_983_length_15517_cov_4.713536 13148..13639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1328.t1.stop1Gcaud1328.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_983_length_15517_cov_4.713536 13148..13150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1328.t1.CDS1Gcaud1328.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_983_length_15517_cov_4.713536 13148..13639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1328.t1.exon1Gcaud1328.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_983_length_15517_cov_4.713536 13148..13639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1328.t1.start1Gcaud1328.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_983_length_15517_cov_4.713536 13637..13639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1328.t1Gcaud1328.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_983_length_15517_cov_4.713536 13148..13639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1328.t1 ID=Gcaud1328.t1|Name=Gcaud1328.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=164bp
MNSAILLPLIGSTSPTTKPTQTVQDAHQYRPWSFEEGQSFARRVSNRSAS
SIFIYRGTPDSFPEAIASAANDRNYSGLMELQSPLALQALPLRNFSIGMF
VSTVCNSIVDLVPWEADAGLVERLSVFAEDELNKVGVKAFAPFYLRETFV
SLAQNFPGFPFPQ*
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spliced messenger RNA

>Gcaud1328.t1 ID=Gcaud1328.t1|Name=Gcaud1328.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp|location=Sequence derived from alignment at NODE_983_length_15517_cov_4.713536:13148..13639- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCGCCATTTTGCTGCCTTTGATAGGATCTACGTCGCCAACAAC
AAAGCCAACCCAAACAGTTCAAGACGCACATCAGTACCGTCCTTGGTCGT
TTGAGGAGGGACAGAGCTTTGCGCGCCGAGTTTCAAATCGATCCGCGTCT
TCTATTTTCATTTACAGAGGTACACCAGATTCGTTCCCGGAGGCAATCGC
GTCCGCTGCGAATGACAGGAATTACTCCGGCTTGATGGAGTTGCAAAGCC
CACTGGCGCTACAAGCACTTCCTCTTCGAAACTTCTCCATTGGAATGTTC
GTGTCCACTGTTTGCAACAGCATCGTTGACCTCGTTCCTTGGGAGGCTGA
CGCAGGATTGGTCGAGAGGCTCAGCGTGTTTGCTGAAGATGAGTTGAACA
AAGTGGGCGTGAAGGCGTTTGCTCCTTTCTACTTGAGAGAAACGTTTGTG
TCTCTTGCGCAGAACTTTCCCGGATTTCCGTTTCCGCAGTGA
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protein sequence of Gcaud1328.t1

>Gcaud1328.t1 ID=Gcaud1328.t1|Name=Gcaud1328.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=164bp
MNSAILLPLIGSTSPTTKPTQTVQDAHQYRPWSFEEGQSFARRVSNRSAS
SIFIYRGTPDSFPEAIASAANDRNYSGLMELQSPLALQALPLRNFSIGMF
VSTVCNSIVDLVPWEADAGLVERLSVFAEDELNKVGVKAFAPFYLRETFV
SLAQNFPGFPFPQ*
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mRNA from alignment at NODE_983_length_15517_cov_4.713536:13148..13639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1328.t1 ID=Gcaud1328.t1|Name=Gcaud1328.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp|location=Sequence derived from alignment at NODE_983_length_15517_cov_4.713536:13148..13639- (Gracilaria caudata M_176_S67 male)
ATGAACTCCGCCATTTTGCTGCCTTTGATAGGATCTACGTCGCCAACAAC
AAAGCCAACCCAAACAGTTCAAGACGCACATCAGTACCGTCCTTGGTCGT
TTGAGGAGGGACAGAGCTTTGCGCGCCGAGTTTCAAATCGATCCGCGTCT
TCTATTTTCATTTACAGAGGTACACCAGATTCGTTCCCGGAGGCAATCGC
GTCCGCTGCGAATGACAGGAATTACTCCGGCTTGATGGAGTTGCAAAGCC
CACTGGCGCTACAAGCACTTCCTCTTCGAAACTTCTCCATTGGAATGTTC
GTGTCCACTGTTTGCAACAGCATCGTTGACCTCGTTCCTTGGGAGGCTGA
CGCAGGATTGGTCGAGAGGCTCAGCGTGTTTGCTGAAGATGAGTTGAACA
AAGTGGGCGTGAAGGCGTTTGCTCCTTTCTACTTGAGAGAAACGTTTGTG
TCTCTTGCGCAGAACTTTCCCGGATTTCCGTTTCCGCAGTGA
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Coding sequence (CDS) from alignment at NODE_983_length_15517_cov_4.713536:13148..13639-

>Gcaud1328.t1 ID=Gcaud1328.t1|Name=Gcaud1328.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=492bp|location=Sequence derived from alignment at NODE_983_length_15517_cov_4.713536:13148..13639- (Gracilaria caudata M_176_S67 male)
ATGAACTCCGCCATTTTGCTGCCTTTGATAGGATCTACGTCGCCAACAAC
AAAGCCAACCCAAACAGTTCAAGACGCACATCAGTACCGTCCTTGGTCGT
TTGAGGAGGGACAGAGCTTTGCGCGCCGAGTTTCAAATCGATCCGCGTCT
TCTATTTTCATTTACAGAGGTACACCAGATTCGTTCCCGGAGGCAATCGC
GTCCGCTGCGAATGACAGGAATTACTCCGGCTTGATGGAGTTGCAAAGCC
CACTGGCGCTACAAGCACTTCCTCTTCGAAACTTCTCCATTGGAATGTTC
GTGTCCACTGTTTGCAACAGCATCGTTGACCTCGTTCCTTGGGAGGCTGA
CGCAGGATTGGTCGAGAGGCTCAGCGTGTTTGCTGAAGATGAGTTGAACA
AAGTGGGCGTGAAGGCGTTTGCTCCTTTCTACTTGAGAGAAACGTTTGTG
TCTCTTGCGCAGAACTTTCCCGGATTTCCGTTTCCGCAGTGA
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