Gcaud24.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud24.t1
Unique Name	Gcaud24.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_9788_length_595_cov_9.150794	contig	NODE_9788_length_595_cov_9.150794:2..593 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_09312T0
PFAMs	Alk_phosphatase
Max annot lvl	4751\|Fungi
Evalue	1.05e-42
EggNOG OGs	COG1785@1\|root,KOG4126@2759\|Eukaryota,38GD6@33154\|Opisthokonta,3NU5V@4751\|Fungi,1GSSH@112252\|Fungi incertae sedis
Description	Mortierella verticillata NRRL 6337
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud24	Gcaud24	Gracilaria caudata M_176_S67 male	gene	NODE_9788_length_595_cov_9.150794 2..593 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud24.t1.CDS1	Gcaud24.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_9788_length_595_cov_9.150794 2..593 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud24.t1.exon1	Gcaud24.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_9788_length_595_cov_9.150794 2..593 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud24.t1.start1	Gcaud24.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_9788_length_595_cov_9.150794 591..593 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud24.t1	Gcaud24.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_9788_length_595_cov_9.150794 2..593 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_9788_length_595_cov_9.150794:2..593-
coding sequence from alignment at NODE_9788_length_595_cov_9.150794:2..593-

mRNA sequence

>Gcaud24.t1 ID=Gcaud24.t1|Name=Gcaud24.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=198bp
MEVWLDRNVYTDNMNDSDNSPTVDGPAPVDQPNLDEMVMSAIKVLSKNEN
GFYLMVEAASIDKSAHPLDVPRTLSDLIELDNTVGQVKAWAKENGDDTLI
IATADHGHGFDVFGTVDTKIWDDAVASSEEKAVSDVDNYCGAVTANDGTV
FNASVEETTGMTIRESNRARRTAIGTYSNAGYPDYDDSDGDGFPDTWX

spliced messenger RNA

>Gcaud24.t1 ID=Gcaud24.t1|Name=Gcaud24.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=592bp|location=Sequence derived from alignment at NODE_9788_length_595_cov_9.150794:2..593- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTGTGGCTTGACAGAAATGTGTACACTGATAATATGAACGACAG
TGACAACTCACCCACTGTTGATGGTCCGGCTCCAGTGGACCAGCCCAACC
TGGATGAGATGGTTATGTCTGCCATCAAGGTTCTTTCCAAGAACGAGAAC
GGTTTCTACCTGATGGTTGAGGCTGCTTCCATTGACAAGTCGGCGCATCC
GCTTGATGTACCGCGTACTCTTTCTGATTTGATTGAATTGGATAACACGG
TTGGTCAGGTGAAGGCGTGGGCCAAGGAAAACGGCGACGACACGCTGATC
ATTGCCACAGCCGATCACGGTCATGGTTTCGATGTTTTCGGTACTGTGGA
TACCAAGATATGGGATGATGCGGTTGCGTCCAGCGAGGAGAAGGCGGTGT
CTGATGTTGACAACTATTGCGGCGCTGTGACTGCCAACGACGGCACGGTG
TTCAATGCGTCTGTGGAGGAGACCACTGGTATGACTATTCGTGAGTCGAA
CCGTGCTCGCCGTACTGCTATTGGTACGTACTCTAATGCTGGTTATCCTG
ACTACGATGATAGCGACGGTGACGGTTTCCCGGACACCTGGG

protein sequence of Gcaud24.t1

>Gcaud24.t1 ID=Gcaud24.t1|Name=Gcaud24.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MEVWLDRNVYTDNMNDSDNSPTVDGPAPVDQPNLDEMVMSAIKVLSKNEN
GFYLMVEAASIDKSAHPLDVPRTLSDLIELDNTVGQVKAWAKENGDDTLI
IATADHGHGFDVFGTVDTKIWDDAVASSEEKAVSDVDNYCGAVTANDGTV
FNASVEETTGMTIRESNRARRTAIGTYSNAGYPDYDDSDGDGFPDTWX

mRNA from alignment at NODE_9788_length_595_cov_9.150794:2..593-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud24.t1 ID=Gcaud24.t1|Name=Gcaud24.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=592bp|location=Sequence derived from alignment at NODE_9788_length_595_cov_9.150794:2..593- (Gracilaria caudata M_176_S67 male)
ATGGAAGTGTGGCTTGACAGAAATGTGTACACTGATAATATGAACGACAG
TGACAACTCACCCACTGTTGATGGTCCGGCTCCAGTGGACCAGCCCAACC
TGGATGAGATGGTTATGTCTGCCATCAAGGTTCTTTCCAAGAACGAGAAC
GGTTTCTACCTGATGGTTGAGGCTGCTTCCATTGACAAGTCGGCGCATCC
GCTTGATGTACCGCGTACTCTTTCTGATTTGATTGAATTGGATAACACGG
TTGGTCAGGTGAAGGCGTGGGCCAAGGAAAACGGCGACGACACGCTGATC
ATTGCCACAGCCGATCACGGTCATGGTTTCGATGTTTTCGGTACTGTGGA
TACCAAGATATGGGATGATGCGGTTGCGTCCAGCGAGGAGAAGGCGGTGT
CTGATGTTGACAACTATTGCGGCGCTGTGACTGCCAACGACGGCACGGTG
TTCAATGCGTCTGTGGAGGAGACCACTGGTATGACTATTCGTGAGTCGAA
CCGTGCTCGCCGTACTGCTATTGGTACGTACTCTAATGCTGGTTATCCTG
ACTACGATGATAGCGACGGTGACGGTTTCCCGGACACCTGGG

Coding sequence (CDS) from alignment at NODE_9788_length_595_cov_9.150794:2..593-

>Gcaud24.t1 ID=Gcaud24.t1|Name=Gcaud24.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=592bp|location=Sequence derived from alignment at NODE_9788_length_595_cov_9.150794:2..593- (Gracilaria caudata M_176_S67 male)
ATGGAAGTGTGGCTTGACAGAAATGTGTACACTGATAATATGAACGACAG
TGACAACTCACCCACTGTTGATGGTCCGGCTCCAGTGGACCAGCCCAACC
TGGATGAGATGGTTATGTCTGCCATCAAGGTTCTTTCCAAGAACGAGAAC
GGTTTCTACCTGATGGTTGAGGCTGCTTCCATTGACAAGTCGGCGCATCC
GCTTGATGTACCGCGTACTCTTTCTGATTTGATTGAATTGGATAACACGG
TTGGTCAGGTGAAGGCGTGGGCCAAGGAAAACGGCGACGACACGCTGATC
ATTGCCACAGCCGATCACGGTCATGGTTTCGATGTTTTCGGTACTGTGGA
TACCAAGATATGGGATGATGCGGTTGCGTCCAGCGAGGAGAAGGCGGTGT
CTGATGTTGACAACTATTGCGGCGCTGTGACTGCCAACGACGGCACGGTG
TTCAATGCGTCTGTGGAGGAGACCACTGGTATGACTATTCGTGAGTCGAA
CCGTGCTCGCCGTACTGCTATTGGTACGTACTCTAATGCTGGTTATCCTG
ACTACGATGATAGCGACGGTGACGGTTTCCCGGACACCTGGG