Gcaud1465.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1465.t1
Unique Name	Gcaud1465.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1024_length_14934_cov_4.428485	contig	NODE_1024_length_14934_cov_4.428485:6776..8398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67267.JNXT01000017_gene7221
Max annot lvl	201174\|Actinobacteria
Evalue	1.54e-138
EggNOG OGs	COG0535@1\|root,COG0535@2\|Bacteria,2HP1A@201174\|Actinobacteria
Description	radical SAM domain protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1465	Gcaud1465	Gracilaria caudata M_176_S67 male	gene	NODE_1024_length_14934_cov_4.428485 6776..8398 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1465.t1.start1	Gcaud1465.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1024_length_14934_cov_4.428485 6776..6778 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1465.t1.CDS1	Gcaud1465.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1024_length_14934_cov_4.428485 6776..8398 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1465.t1.exon1	Gcaud1465.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1024_length_14934_cov_4.428485 6776..8398 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1465.t1.stop1	Gcaud1465.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1024_length_14934_cov_4.428485 8396..8398 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1465.t1	Gcaud1465.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1024_length_14934_cov_4.428485 6776..8398 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+
coding sequence from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+

mRNA sequence

>Gcaud1465.t1 ID=Gcaud1465.t1|Name=Gcaud1465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=541bp
MMMSSAFVSSTPLPCAPAKPTSLRRTCMTVAPPRSTERANANQLNPVYAR
FQAFLSSLSRIEAFSRPGVPSSDARYDALPPHVKTPSQMIGRMSPGCEGT
KGVFPRCNFGCKPCYHSSTANSVRVDGAHTLVNIARQMQLLQRQRGPSAH
CQLIGGEVSLLPPEDHAMALETMRYFGRIPMSFTHGDFDYDYLQRLAVDQ
TNRPRFDRLDFAVHFDMGMRGRRGAAHVRDEMDLMPFRRRFMQMFERLRQ
EHGVGHYIAHNMTVQPSNLPQVAEAVREMKFMGFRMMSFQPAALQGAEKR
RVSNLRTIADDHGQIVWEEIEKGMGMRLPYSLFQMGDERCNRTCVCGVVG
PRSKKEDKHFFVFFDDQCPEDVRLRDLIMSEIGNVVLKPPVLLLKLIRTV
LGKPWLIVPAFSYLMRMLNRAGGLWAVLRHGVQPLFVVMHRFMDADDVKK
AWEFMEGGVAPDDPRVEAAGPRIRETMERLDSCAYSMAQPERNTVVPACV
QHSVYDPEENVQLAQELPLREPARSASEVQLDLSNGPSRF*

spliced messenger RNA

>Gcaud1465.t1 ID=Gcaud1465.t1|Name=Gcaud1465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGTCGTCAGCATTCGTCTCCTCCACGCCGTTGCCGTGCGCCCC
CGCAAAGCCCACCAGTCTCCGTCGCACCTGTATGACCGTTGCGCCGCCTC
GGTCCACCGAACGTGCCAATGCCAATCAGCTCAACCCGGTCTACGCTCGC
TTCCAGGCTTTCCTCTCCTCGCTTTCCCGCATCGAGGCTTTCTCGCGTCC
TGGTGTACCGTCCAGTGACGCTCGTTACGATGCGCTTCCGCCGCACGTGA
AAACCCCCTCTCAGATGATTGGCCGAATGTCTCCGGGCTGTGAGGGCACC
AAGGGCGTCTTCCCTCGCTGTAACTTCGGCTGTAAACCATGCTACCACTC
CTCCACAGCCAACTCCGTGCGCGTCGACGGCGCCCACACCCTTGTAAATA
TAGCTCGCCAGATGCAACTTCTCCAGCGTCAACGCGGCCCTTCCGCACAC
TGCCAACTCATCGGCGGTGAAGTCTCGCTGCTTCCTCCGGAAGATCATGC
TATGGCTTTGGAAACCATGCGGTACTTTGGTCGCATTCCAATGAGCTTCA
CGCATGGCGATTTCGATTATGATTATCTTCAACGTCTTGCCGTAGATCAA
ACCAATCGTCCGCGATTTGATCGGCTGGACTTTGCAGTACATTTCGATAT
GGGCATGCGGGGTCGACGAGGCGCTGCCCATGTGCGCGATGAGATGGATC
TTATGCCGTTCCGCCGCCGCTTCATGCAAATGTTCGAGCGATTGCGTCAA
GAGCATGGTGTAGGCCATTATATAGCTCATAACATGACTGTACAGCCATC
CAATCTTCCACAAGTAGCCGAGGCCGTGCGCGAAATGAAGTTCATGGGCT
TTCGCATGATGTCGTTCCAGCCAGCTGCTTTGCAAGGTGCGGAGAAGCGT
CGTGTTTCCAATCTTCGAACTATCGCCGATGACCATGGGCAGATCGTTTG
GGAAGAGATAGAAAAGGGCATGGGTATGCGTCTCCCATATTCTCTGTTCC
AGATGGGCGATGAACGTTGCAACCGCACGTGCGTTTGTGGCGTTGTCGGG
CCCCGTTCAAAGAAGGAAGATAAGCACTTTTTTGTGTTCTTTGACGACCA
ATGCCCTGAAGACGTGCGCCTCCGCGATCTCATTATGTCCGAAATAGGCA
ACGTCGTTCTCAAACCACCGGTTTTGCTTCTAAAACTGATTCGCACTGTT
CTTGGCAAACCGTGGCTCATCGTTCCAGCATTCTCATACTTGATGCGTAT
GCTCAACAGGGCTGGAGGACTGTGGGCCGTTTTGCGTCACGGCGTGCAGC
CGCTTTTCGTTGTTATGCATCGATTCATGGACGCTGACGACGTTAAAAAG
GCCTGGGAGTTCATGGAGGGCGGGGTGGCACCAGATGATCCAAGAGTAGA
AGCGGCTGGACCGCGCATTCGGGAGACGATGGAGCGTTTGGATTCCTGTG
CGTATAGTATGGCGCAACCCGAGAGAAATACAGTTGTGCCTGCGTGCGTG
CAGCATAGTGTATACGACCCAGAAGAAAATGTTCAACTGGCGCAAGAACT
TCCTCTGAGAGAGCCGGCCAGATCCGCTTCTGAAGTGCAGTTGGACCTTT
CGAATGGGCCCAGCCGATTTTGA

protein sequence of Gcaud1465.t1

>Gcaud1465.t1 ID=Gcaud1465.t1|Name=Gcaud1465.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=541bp
MMMSSAFVSSTPLPCAPAKPTSLRRTCMTVAPPRSTERANANQLNPVYAR
FQAFLSSLSRIEAFSRPGVPSSDARYDALPPHVKTPSQMIGRMSPGCEGT
KGVFPRCNFGCKPCYHSSTANSVRVDGAHTLVNIARQMQLLQRQRGPSAH
CQLIGGEVSLLPPEDHAMALETMRYFGRIPMSFTHGDFDYDYLQRLAVDQ
TNRPRFDRLDFAVHFDMGMRGRRGAAHVRDEMDLMPFRRRFMQMFERLRQ
EHGVGHYIAHNMTVQPSNLPQVAEAVREMKFMGFRMMSFQPAALQGAEKR
RVSNLRTIADDHGQIVWEEIEKGMGMRLPYSLFQMGDERCNRTCVCGVVG
PRSKKEDKHFFVFFDDQCPEDVRLRDLIMSEIGNVVLKPPVLLLKLIRTV
LGKPWLIVPAFSYLMRMLNRAGGLWAVLRHGVQPLFVVMHRFMDADDVKK
AWEFMEGGVAPDDPRVEAAGPRIRETMERLDSCAYSMAQPERNTVVPACV
QHSVYDPEENVQLAQELPLREPARSASEVQLDLSNGPSRF*

mRNA from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1465.t1 ID=Gcaud1465.t1|Name=Gcaud1465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+ (Gracilaria caudata M_176_S67 male)
ATGATGATGTCGTCAGCATTCGTCTCCTCCACGCCGTTGCCGTGCGCCCC
CGCAAAGCCCACCAGTCTCCGTCGCACCTGTATGACCGTTGCGCCGCCTC
GGTCCACCGAACGTGCCAATGCCAATCAGCTCAACCCGGTCTACGCTCGC
TTCCAGGCTTTCCTCTCCTCGCTTTCCCGCATCGAGGCTTTCTCGCGTCC
TGGTGTACCGTCCAGTGACGCTCGTTACGATGCGCTTCCGCCGCACGTGA
AAACCCCCTCTCAGATGATTGGCCGAATGTCTCCGGGCTGTGAGGGCACC
AAGGGCGTCTTCCCTCGCTGTAACTTCGGCTGTAAACCATGCTACCACTC
CTCCACAGCCAACTCCGTGCGCGTCGACGGCGCCCACACCCTTGTAAATA
TAGCTCGCCAGATGCAACTTCTCCAGCGTCAACGCGGCCCTTCCGCACAC
TGCCAACTCATCGGCGGTGAAGTCTCGCTGCTTCCTCCGGAAGATCATGC
TATGGCTTTGGAAACCATGCGGTACTTTGGTCGCATTCCAATGAGCTTCA
CGCATGGCGATTTCGATTATGATTATCTTCAACGTCTTGCCGTAGATCAA
ACCAATCGTCCGCGATTTGATCGGCTGGACTTTGCAGTACATTTCGATAT
GGGCATGCGGGGTCGACGAGGCGCTGCCCATGTGCGCGATGAGATGGATC
TTATGCCGTTCCGCCGCCGCTTCATGCAAATGTTCGAGCGATTGCGTCAA
GAGCATGGTGTAGGCCATTATATAGCTCATAACATGACTGTACAGCCATC
CAATCTTCCACAAGTAGCCGAGGCCGTGCGCGAAATGAAGTTCATGGGCT
TTCGCATGATGTCGTTCCAGCCAGCTGCTTTGCAAGGTGCGGAGAAGCGT
CGTGTTTCCAATCTTCGAACTATCGCCGATGACCATGGGCAGATCGTTTG
GGAAGAGATAGAAAAGGGCATGGGTATGCGTCTCCCATATTCTCTGTTCC
AGATGGGCGATGAACGTTGCAACCGCACGTGCGTTTGTGGCGTTGTCGGG
CCCCGTTCAAAGAAGGAAGATAAGCACTTTTTTGTGTTCTTTGACGACCA
ATGCCCTGAAGACGTGCGCCTCCGCGATCTCATTATGTCCGAAATAGGCA
ACGTCGTTCTCAAACCACCGGTTTTGCTTCTAAAACTGATTCGCACTGTT
CTTGGCAAACCGTGGCTCATCGTTCCAGCATTCTCATACTTGATGCGTAT
GCTCAACAGGGCTGGAGGACTGTGGGCCGTTTTGCGTCACGGCGTGCAGC
CGCTTTTCGTTGTTATGCATCGATTCATGGACGCTGACGACGTTAAAAAG
GCCTGGGAGTTCATGGAGGGCGGGGTGGCACCAGATGATCCAAGAGTAGA
AGCGGCTGGACCGCGCATTCGGGAGACGATGGAGCGTTTGGATTCCTGTG
CGTATAGTATGGCGCAACCCGAGAGAAATACAGTTGTGCCTGCGTGCGTG
CAGCATAGTGTATACGACCCAGAAGAAAATGTTCAACTGGCGCAAGAACT
TCCTCTGAGAGAGCCGGCCAGATCCGCTTCTGAAGTGCAGTTGGACCTTT
CGAATGGGCCCAGCCGATTTTGA

Coding sequence (CDS) from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+

>Gcaud1465.t1 ID=Gcaud1465.t1|Name=Gcaud1465.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1623bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:6776..8398+ (Gracilaria caudata M_176_S67 male)
ATGATGATGTCGTCAGCATTCGTCTCCTCCACGCCGTTGCCGTGCGCCCC
CGCAAAGCCCACCAGTCTCCGTCGCACCTGTATGACCGTTGCGCCGCCTC
GGTCCACCGAACGTGCCAATGCCAATCAGCTCAACCCGGTCTACGCTCGC
TTCCAGGCTTTCCTCTCCTCGCTTTCCCGCATCGAGGCTTTCTCGCGTCC
TGGTGTACCGTCCAGTGACGCTCGTTACGATGCGCTTCCGCCGCACGTGA
AAACCCCCTCTCAGATGATTGGCCGAATGTCTCCGGGCTGTGAGGGCACC
AAGGGCGTCTTCCCTCGCTGTAACTTCGGCTGTAAACCATGCTACCACTC
CTCCACAGCCAACTCCGTGCGCGTCGACGGCGCCCACACCCTTGTAAATA
TAGCTCGCCAGATGCAACTTCTCCAGCGTCAACGCGGCCCTTCCGCACAC
TGCCAACTCATCGGCGGTGAAGTCTCGCTGCTTCCTCCGGAAGATCATGC
TATGGCTTTGGAAACCATGCGGTACTTTGGTCGCATTCCAATGAGCTTCA
CGCATGGCGATTTCGATTATGATTATCTTCAACGTCTTGCCGTAGATCAA
ACCAATCGTCCGCGATTTGATCGGCTGGACTTTGCAGTACATTTCGATAT
GGGCATGCGGGGTCGACGAGGCGCTGCCCATGTGCGCGATGAGATGGATC
TTATGCCGTTCCGCCGCCGCTTCATGCAAATGTTCGAGCGATTGCGTCAA
GAGCATGGTGTAGGCCATTATATAGCTCATAACATGACTGTACAGCCATC
CAATCTTCCACAAGTAGCCGAGGCCGTGCGCGAAATGAAGTTCATGGGCT
TTCGCATGATGTCGTTCCAGCCAGCTGCTTTGCAAGGTGCGGAGAAGCGT
CGTGTTTCCAATCTTCGAACTATCGCCGATGACCATGGGCAGATCGTTTG
GGAAGAGATAGAAAAGGGCATGGGTATGCGTCTCCCATATTCTCTGTTCC
AGATGGGCGATGAACGTTGCAACCGCACGTGCGTTTGTGGCGTTGTCGGG
CCCCGTTCAAAGAAGGAAGATAAGCACTTTTTTGTGTTCTTTGACGACCA
ATGCCCTGAAGACGTGCGCCTCCGCGATCTCATTATGTCCGAAATAGGCA
ACGTCGTTCTCAAACCACCGGTTTTGCTTCTAAAACTGATTCGCACTGTT
CTTGGCAAACCGTGGCTCATCGTTCCAGCATTCTCATACTTGATGCGTAT
GCTCAACAGGGCTGGAGGACTGTGGGCCGTTTTGCGTCACGGCGTGCAGC
CGCTTTTCGTTGTTATGCATCGATTCATGGACGCTGACGACGTTAAAAAG
GCCTGGGAGTTCATGGAGGGCGGGGTGGCACCAGATGATCCAAGAGTAGA
AGCGGCTGGACCGCGCATTCGGGAGACGATGGAGCGTTTGGATTCCTGTG
CGTATAGTATGGCGCAACCCGAGAGAAATACAGTTGTGCCTGCGTGCGTG
CAGCATAGTGTATACGACCCAGAAGAAAATGTTCAACTGGCGCAAGAACT
TCCTCTGAGAGAGCCGGCCAGATCCGCTTCTGAAGTGCAGTTGGACCTTT
CGAATGGGCCCAGCCGATTTTGA