Gcaud3490.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3490.t1
Unique NameGcaud3490.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_968_length_15659_cov_4.393885contigNODE_968_length_15659_cov_4.393885:14684..15376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3490Gcaud3490Gracilaria caudata M_176_S67 malegeneNODE_968_length_15659_cov_4.393885 14684..15376 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3490.t1.stop1Gcaud3490.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_968_length_15659_cov_4.393885 14684..14686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3490.t1.CDS1Gcaud3490.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_968_length_15659_cov_4.393885 14684..15376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3490.t1.exon1Gcaud3490.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_968_length_15659_cov_4.393885 14684..15376 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3490.t1.start1Gcaud3490.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_968_length_15659_cov_4.393885 15374..15376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3490.t1Gcaud3490.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_968_length_15659_cov_4.393885 14684..15376 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3490.t1 ID=Gcaud3490.t1|Name=Gcaud3490.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp
MSPLPASYAETALLAFHYASLFKGLCIHLVLTHPFPLKHPVPWVHAVHHV
DHHDLIPILSEPQRPEQHRVIILSALRQQHTPLLRKLASVHADAIILFNS
FLDEPLITPVYPFIDTYVVRALQKSAVMRARYDAPWHVFIEIAVFEYEWV
GNCDNNWRPTQRRVDNFALKRDAHTKSINGYWRTPYAGCEAGFWPFMTLA
CRELLPLDGRVLAQIDKEKKQKAQRPFGFF*
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spliced messenger RNA

>Gcaud3490.t1 ID=Gcaud3490.t1|Name=Gcaud3490.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=693bp|location=Sequence derived from alignment at NODE_968_length_15659_cov_4.393885:14684..15376- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCCTGCCTGCCTCCTACGCCGAGACCGCGCTGTTGGCCTTCCA
CTACGCCAGTCTCTTCAAGGGTCTATGCATTCACCTCGTGCTCACACACC
CCTTTCCGCTAAAGCACCCGGTGCCCTGGGTTCATGCTGTACACCATGTC
GATCATCACGATTTGATACCCATCCTAAGCGAGCCGCAACGCCCAGAACA
GCATCGTGTCATTATCCTGTCTGCCTTACGACAGCAGCACACCCCGCTCC
TGAGAAAGCTGGCCTCCGTCCATGCCGATGCAATCATTCTCTTCAATTCC
TTTCTAGATGAACCTCTGATCACCCCCGTTTACCCTTTCATAGACACCTA
CGTTGTGCGCGCGTTGCAGAAGAGCGCCGTGATGCGCGCGCGCTACGACG
CCCCCTGGCATGTTTTCATTGAGATAGCGGTATTTGAGTATGAATGGGTG
GGCAACTGTGACAACAACTGGCGCCCAACACAACGCCGAGTCGACAATTT
TGCACTCAAGCGAGATGCGCACACCAAGTCCATCAATGGCTATTGGCGCA
CGCCCTACGCGGGATGTGAAGCGGGCTTCTGGCCGTTTATGACTCTTGCA
TGCAGGGAGCTACTGCCACTGGATGGACGCGTTCTAGCGCAGATCGACAA
GGAAAAGAAACAAAAAGCACAACGCCCGTTTGGTTTCTTCTGA
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protein sequence of Gcaud3490.t1

>Gcaud3490.t1 ID=Gcaud3490.t1|Name=Gcaud3490.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=231bp
MSPLPASYAETALLAFHYASLFKGLCIHLVLTHPFPLKHPVPWVHAVHHV
DHHDLIPILSEPQRPEQHRVIILSALRQQHTPLLRKLASVHADAIILFNS
FLDEPLITPVYPFIDTYVVRALQKSAVMRARYDAPWHVFIEIAVFEYEWV
GNCDNNWRPTQRRVDNFALKRDAHTKSINGYWRTPYAGCEAGFWPFMTLA
CRELLPLDGRVLAQIDKEKKQKAQRPFGFF*
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mRNA from alignment at NODE_968_length_15659_cov_4.393885:14684..15376-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3490.t1 ID=Gcaud3490.t1|Name=Gcaud3490.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=693bp|location=Sequence derived from alignment at NODE_968_length_15659_cov_4.393885:14684..15376- (Gracilaria caudata M_176_S67 male)
ATGTCGCCCCTGCCTGCCTCCTACGCCGAGACCGCGCTGTTGGCCTTCCA
CTACGCCAGTCTCTTCAAGGGTCTATGCATTCACCTCGTGCTCACACACC
CCTTTCCGCTAAAGCACCCGGTGCCCTGGGTTCATGCTGTACACCATGTC
GATCATCACGATTTGATACCCATCCTAAGCGAGCCGCAACGCCCAGAACA
GCATCGTGTCATTATCCTGTCTGCCTTACGACAGCAGCACACCCCGCTCC
TGAGAAAGCTGGCCTCCGTCCATGCCGATGCAATCATTCTCTTCAATTCC
TTTCTAGATGAACCTCTGATCACCCCCGTTTACCCTTTCATAGACACCTA
CGTTGTGCGCGCGTTGCAGAAGAGCGCCGTGATGCGCGCGCGCTACGACG
CCCCCTGGCATGTTTTCATTGAGATAGCGGTATTTGAGTATGAATGGGTG
GGCAACTGTGACAACAACTGGCGCCCAACACAACGCCGAGTCGACAATTT
TGCACTCAAGCGAGATGCGCACACCAAGTCCATCAATGGCTATTGGCGCA
CGCCCTACGCGGGATGTGAAGCGGGCTTCTGGCCGTTTATGACTCTTGCA
TGCAGGGAGCTACTGCCACTGGATGGACGCGTTCTAGCGCAGATCGACAA
GGAAAAGAAACAAAAAGCACAACGCCCGTTTGGTTTCTTCTGA
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Coding sequence (CDS) from alignment at NODE_968_length_15659_cov_4.393885:14684..15376-

>Gcaud3490.t1 ID=Gcaud3490.t1|Name=Gcaud3490.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=693bp|location=Sequence derived from alignment at NODE_968_length_15659_cov_4.393885:14684..15376- (Gracilaria caudata M_176_S67 male)
ATGTCGCCCCTGCCTGCCTCCTACGCCGAGACCGCGCTGTTGGCCTTCCA
CTACGCCAGTCTCTTCAAGGGTCTATGCATTCACCTCGTGCTCACACACC
CCTTTCCGCTAAAGCACCCGGTGCCCTGGGTTCATGCTGTACACCATGTC
GATCATCACGATTTGATACCCATCCTAAGCGAGCCGCAACGCCCAGAACA
GCATCGTGTCATTATCCTGTCTGCCTTACGACAGCAGCACACCCCGCTCC
TGAGAAAGCTGGCCTCCGTCCATGCCGATGCAATCATTCTCTTCAATTCC
TTTCTAGATGAACCTCTGATCACCCCCGTTTACCCTTTCATAGACACCTA
CGTTGTGCGCGCGTTGCAGAAGAGCGCCGTGATGCGCGCGCGCTACGACG
CCCCCTGGCATGTTTTCATTGAGATAGCGGTATTTGAGTATGAATGGGTG
GGCAACTGTGACAACAACTGGCGCCCAACACAACGCCGAGTCGACAATTT
TGCACTCAAGCGAGATGCGCACACCAAGTCCATCAATGGCTATTGGCGCA
CGCCCTACGCGGGATGTGAAGCGGGCTTCTGGCCGTTTATGACTCTTGCA
TGCAGGGAGCTACTGCCACTGGATGGACGCGTTCTAGCGCAGATCGACAA
GGAAAAGAAACAAAAAGCACAACGCCCGTTTGGTTTCTTCTGA
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