Gcaud2318.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2318.t1
Unique NameGcaud2318.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length366
Homology
BLAST of Gcaud2318.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 158 bits (400), Expect = 3.970e-41
Identity = 125/359 (34.82%), Postives = 193/359 (53.76%), Query Frame = 0
Query:    1 MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRIRAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSVRTLRQPVVQFIDLRSET-VKSQCSFVENGIFIQKAGNVTEDGGS-VLVQCSEETVFSFNASELHTERMLPTIKPTMGCSS-----CSNMDPRFGE---CLTLCAFV--VAQNNSVFHSVSTSPEWAREMDANGEAKNH---LTYLKTDVHFSTNDLQKEMARRAAETYADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLSSLILVLCSLLLLGRNLF-DVSDPLQWAFRSIRKDDAPIERDPAI 343
            MV +PLKSQFVS+I+TLIS ++E F+F + + FN+Y E   LRKG Q+ +R H  R+K  A +A + FI LE+ +SF++DPA  IK     C+++D +  LR+      D   E  +  +C  ++   F+Q+AGN + +  +   V+C +  ++ +  +E   +  L  +  T G  +     C    P  GE      LCA V  +  N+  F +V  S    RE +  G   N    + +L+T V ++T+ L +  ARR    Y   +TDP+  R+R+ MG+E R C F     + T VP+ L+  I + W+ S  L   S LLL R++F D+SDPL WA R+ R  D PI  +P +
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRI-DLREGFTG--DTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEY-PNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAA-VRESEV-GPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSF-LTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVV 352          
BLAST of Gcaud2318.t1 vs. uniprot
Match: A0A2V3ISI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 142 bits (359), Expect = 1.460e-35
Identity = 110/351 (31.34%), Postives = 184/351 (52.42%), Query Frame = 0
Query:    1 MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRIRAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSVRTLRQPVVQFIDLRSETVKSQCSFVENGIFIQKAGNVTEDGGSVLVQCSEETVFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNSV-FHSVSTSPEWAREMDANGEAKNHLTYLKTDVHFSTNDLQKEMARRAAETYADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLSSLILVLCSLLLLGRNLFDVSDPLQWAFRSIRKDDAPIERDPAI--RIEKG 348
            MV++PLKSQ+ S+I T++S ++E  +  + + +N+Y E   L  G ++ +R H  R++     AT+ F+ LE+  SF++DPA        SC+SLD++  +R+ ++  I LR+  V   C      +  Q AGN+++DG    ++C ++  F F+A   H+       + TM C     +D   GE L LCAF+ +  + V F  +    + +  +D N      L   KT V+++T  +++E+ RR+     D +TD    RR +  G EE  C+F V     T +    + AI+  W  SL   L SL + GR  +D+SDPL WA +++R +D+    +P +  R E G
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDAL-PIRRGMLD-ISLRAAVVGINCLGTNTSLLWQLAGNISDDGE---IKCGDD--FLFSADIHHSPNEPVPDEHTMECI----LD---GE-LNLCAFLYSNGSEVTFTEIVLDTDLSFVLDNNYA----LRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVFS-PATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENG 331          
BLAST of Gcaud2318.t1 vs. uniprot
Match: A0A2V3J6F3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 136 bits (342), Expect = 2.360e-33
Identity = 101/344 (29.36%), Postives = 174/344 (50.58%), Query Frame = 0
Query:    1 MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRIRAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSVRTLRQPVVQFIDLRSETVKSQCSFVENGIFIQKAGNVTEDGGSVLVQCSEETVFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNSVFHSVSTSPEWAREMDANGEAKNHLTYLKTDVHFSTNDLQKEMARRAAETYADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLSSLILVLCSLLLLGRNLF-DVSDPLQWAFRSIRKDDAPIERDPAI 343
            MV++ LK+ FVSVI+T++ST++E  +       N  +E  +L++G  +++R HL R+++ + +    F  LE+  SFY DP   ++ EI+ C++  +         QF  LR+  +  +C  ++NG   Q  GN +    +  V+CS E +++    +  +E ++  +    GC S        GE    C FV  + N    S+ ++P +  E+    +   H+    T++HF+        A RA   +  +I  P A RR I  G  E  C F V  G  T VP+A+I+A+++VW  +L +   S+  L R +F  + DP+ WA RS+R  D P+  +P +
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITASNSVKDSGDSTQF--LRASDILVECRRLDNGTITQFGGNFSSR--TQQVECSTEAMYTHPLGDETSEEIVADVP--FGCVS-------GGEEGAACVFVQQRGNL---SLISAPFFLDELSILPDTLPHII---TELHFTPPSNVSLFATRATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRGSATTVPLAMIVALAAVWAVALAM-FASVFALRRGVFFKLDDPMHWATRSVRAADDPLGDNPVL 324          
BLAST of Gcaud2318.t1 vs. uniprot
Match: A0A2V3J5A0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 133 bits (335), Expect = 4.130e-32
Identity = 105/357 (29.41%), Postives = 181/357 (50.70%), Query Frame = 0
Query:    1 MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRIRAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSV-RTLRQP--VVQFIDLRSETVKSQCSFVENGIFIQKAGNVTEDGGSVLVQCSEETVFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCA---FVVAQNNSVFHSVSTSPEWAREMDANGEAK------NHLTYLKTDVHFSTN--DLQKEMARRAAETYADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLSSLILVLCSLLLLGRNLFDVSDPLQWAFRSIRKDDAPIERDPAI 343
            MV++PLKSQ+VS+I T+IS ++E  +  + +R N Y E H L+KG  + +  H NR+     + T  F  +EL +SFY+DPA  +  +   CV+++++ R    P   ++ I +    VK+     E+ IF+ + GN + +   V  +C+E     F           P +   +G ++  + +  F + L  CA    VV Q  S   S S +  W  ++    E        + + +L T +  + N  +L  + A R  + Y +++ DP   RR + +G E  +C F     E T VP  +I+++S+VW+ SL     +LLL  R  +D+S+P+ WA R+ R+ D P+  DP++
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTN----ESNIFL-RVGNYSMETRKV--ECAESATLMFTLE--------PHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTS-EATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSV 341          
BLAST of Gcaud2318.t1 vs. uniprot
Match: A0A2V3J5C2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 119 bits (298), Expect = 8.230e-27
Identity = 100/356 (28.09%), Postives = 173/356 (48.60%), Query Frame = 0
Query:    1 MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRIRAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIY--SCVSLDSVRTLRQPVVQFIDLRSETVKSQCSFVENGIFIQKAGNVTE-----DGGSV----LVQCSEETVFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNSVFHSVSTSPEWAREMDANGEAKNHLTY--LKTDVHFSTNDLQKEMARRAAETYADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLSSLILVLCSLLLLGRNLFDVSDPLQWAFRSIRKDDAPIERDPAI 343
            MV++PLKSQ+ S+I+T+IS ++E  +  + + FN+Y E   L+ G ++ +R H  R+K     AT+ F+ LE+F SFY+DP    K E+   +C SLD++ T++Q ++  I  ++  V  +C  + + +F Q AGN+++     +GG++    + +C ++ V      E   +  +P  +  +GC              T C FV    N V     T  ++    D +      +T    KT + ++   L+   A RA +  +  +TD    RR +  G     C+F     + T V    I AI   W  S+   + S  +  R  +D+SDPL WA ++IR +D     +P +
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDD--KTELVRKNCTSLDAL-TVQQGLLN-ISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPD-EYVVGCVG------------TSCVFVYRSGNEV-----TFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFS-DATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVV 333          
BLAST of Gcaud2318.t1 vs. uniprot
Match: A0A2V3ICZ9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ9_9FLOR)

HSP 1 Score: 60.5 bits (145), Expect = 1.580e-6
Identity = 83/338 (24.56%), Postives = 145/338 (42.90%), Query Frame = 0
Query:    1 MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRIRAHLN--RSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSL-----DSVRTLRQPVVQFIDLRSETVKSQCSFVEN---GIFIQKAGNVTEDGGSVLVQCSEETVFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNSVFHSVSTSPEWAREMDANGEAKNHLTYLKTDVHFSTNDLQKEMARRAAET--YADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLSSLILVLCSLLLLGRNLFDVSDPLQWA 326
            MVV+ +KSQ VS+ ITL + V+E       + F    E  +L  G+ L +R H       +AA IA   FI++E+ V    +    +      CV           ++ QP       RS   ++ CS  ++    IF+    +VT    S +V C++E V+  +  +  + R +   KP  G       +  +G  +T C+F   +  +          +   +D   ++ N   ++   + F   D Q  +++R      + +S  D  A   R+L+G    +C F       T VPV L+  + S+WL S++L +C      + LFD++  L W+
Sbjct:    1 MVVIGVKSQVVSLFITLATAVAELSFTTGVLLFISSREWSKLENGKSLSVRGHQRVVSQTLAACIAA--FIIVEIIVGASIEDELRMTPFTEPCVQTGINTGQEFTSIEQPS------RSYLAQTSCSKFKDFWLQIFLTNF-SVT----STVVSCADEPVYELHIRD-RSRRQIGQAKPYCG-------ENEWG--VTFCSFTSLETGTF--------SFTELLDEGEKSMNETKFIDVKLFFEP-DSQDIISKRLLRVILHGESAMDLDAILSRVLLGSRLSTCTF-FKARNATRVPVVLMCVLVSIWLCSILLFVCVACSSRKMLFDLNKSLDWS 305          
The following BLAST results are available for this feature:
BLAST of Gcaud2318.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IT05_9FLOR3.970e-4134.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI7_9FLOR1.460e-3531.34Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6F3_9FLOR2.360e-3329.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A0_9FLOR4.130e-3229.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C2_9FLOR8.230e-2728.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICZ9_9FLOR1.580e-624.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..287
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 313..365
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 288..312
NoneNo IPR availableTMHMMTMhelixcoord: 290..312
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 59..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1224_length_12411_cov_5.043588contigNODE_1224_length_12411_cov_5.043588:3504..4601 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2318.t1Gcaud2318.t1Gracilaria caudata M_176_S67 malemRNANODE_1224_length_12411_cov_5.043588 3504..4601 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2318.t1 ID=Gcaud2318.t1|Name=Gcaud2318.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRI
RAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSVRT
LRQPVVQFIDLRSETVKSQCSFVENGIFIQKAGNVTEDGGSVLVQCSEET
VFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNS
VFHSVSTSPEWAREMDANGEAKNHLTYLKTDVHFSTNDLQKEMARRAAET
YADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLS
SLILVLCSLLLLGRNLFDVSDPLQWAFRSIRKDDAPIERDPAIRIEKGKE
DSSFFLSEAVQRGQR*
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