Gcaud2318.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2318.t1
Unique NameGcaud2318.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1224_length_12411_cov_5.043588contigNODE_1224_length_12411_cov_5.043588:3504..4601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2318Gcaud2318Gracilaria caudata M_176_S67 malegeneNODE_1224_length_12411_cov_5.043588 3504..4601 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2318.t1.start1Gcaud2318.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1224_length_12411_cov_5.043588 3504..3506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2318.t1.CDS1Gcaud2318.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1224_length_12411_cov_5.043588 3504..4601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2318.t1.exon1Gcaud2318.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1224_length_12411_cov_5.043588 3504..4601 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2318.t1.stop1Gcaud2318.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1224_length_12411_cov_5.043588 4599..4601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2318.t1Gcaud2318.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1224_length_12411_cov_5.043588 3504..4601 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2318.t1 ID=Gcaud2318.t1|Name=Gcaud2318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRI
RAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSVRT
LRQPVVQFIDLRSETVKSQCSFVENGIFIQKAGNVTEDGGSVLVQCSEET
VFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNS
VFHSVSTSPEWAREMDANGEAKNHLTYLKTDVHFSTNDLQKEMARRAAET
YADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLS
SLILVLCSLLLLGRNLFDVSDPLQWAFRSIRKDDAPIERDPAIRIEKGKE
DSSFFLSEAVQRGQR*
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spliced messenger RNA

>Gcaud2318.t1 ID=Gcaud2318.t1|Name=Gcaud2318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_1224_length_12411_cov_5.043588:3504..4601+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCGTCCCGCTCAAGTCGCAATTCGTGAGTGTTATCATAACCTT
AATCTCCACCGTGTCTGAAGCATTCGTCTTCTGCTCTTTCATCAGATTCA
ACCGCTACTATGAGAATCATCGCTTACGCAAAGGAGAACAGCTTCGAATT
CGAGCGCATTTGAATCGATCAAAAATAGCAGCCGCCATTGCAACGATATT
TTTCATTGTGCTCGAACTGTTTGTCTCGTTCTACACTGATCCTGCCAGGA
TTATTAAGAATGAAATCTACTCGTGTGTTTCCCTGGATTCAGTTAGAACA
TTAAGGCAACCAGTGGTCCAATTCATTGATCTCAGGAGTGAAACTGTCAA
GAGCCAGTGTTCGTTCGTGGAAAATGGCATATTCATCCAAAAGGCGGGCA
ACGTAACGGAAGATGGCGGCAGTGTTCTAGTTCAATGCTCCGAAGAAACT
GTATTTTCTTTCAATGCCTCAGAACTACACACCGAGAGGATGCTACCGAC
AATCAAACCGACCATGGGTTGTTCTTCGTGCTCGAATATGGATCCAAGAT
TCGGAGAATGCCTAACTCTTTGTGCTTTTGTCGTCGCACAAAACAATTCT
GTGTTCCACTCGGTGTCAACTTCACCAGAATGGGCGCGGGAAATGGATGC
TAATGGGGAGGCAAAGAATCATTTAACTTATCTGAAGACTGACGTGCATT
TCAGCACTAACGATCTGCAGAAAGAAATGGCACGAAGAGCGGCGGAAACG
TATGCAGACAGTATTACGGATCCTATCGCGCAAAGACGTCGAATTCTTAT
GGGTTTAGAGGAAAGATCTTGTGATTTCTCTGTTGACGGAGGAGAAGGCA
CAGTTGTACCTGTTGCTCTCATTATCGCGATATCGAGTGTTTGGTTGAGT
TCTTTGATTCTGGTTTTGTGTTCACTGTTGCTTCTAGGTCGAAATTTGTT
TGACGTGAGCGATCCGTTGCAGTGGGCTTTTCGCAGCATTCGAAAGGACG
ATGCTCCAATCGAGCGCGACCCAGCGATTAGAATTGAAAAGGGGAAGGAG
GACAGCTCCTTTTTCTTATCCGAAGCTGTGCAACGTGGTCAACGCTGA
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protein sequence of Gcaud2318.t1

>Gcaud2318.t1 ID=Gcaud2318.t1|Name=Gcaud2318.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
MVVVPLKSQFVSVIITLISTVSEAFVFCSFIRFNRYYENHRLRKGEQLRI
RAHLNRSKIAAAIATIFFIVLELFVSFYTDPARIIKNEIYSCVSLDSVRT
LRQPVVQFIDLRSETVKSQCSFVENGIFIQKAGNVTEDGGSVLVQCSEET
VFSFNASELHTERMLPTIKPTMGCSSCSNMDPRFGECLTLCAFVVAQNNS
VFHSVSTSPEWAREMDANGEAKNHLTYLKTDVHFSTNDLQKEMARRAAET
YADSITDPIAQRRRILMGLEERSCDFSVDGGEGTVVPVALIIAISSVWLS
SLILVLCSLLLLGRNLFDVSDPLQWAFRSIRKDDAPIERDPAIRIEKGKE
DSSFFLSEAVQRGQR*
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mRNA from alignment at NODE_1224_length_12411_cov_5.043588:3504..4601+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2318.t1 ID=Gcaud2318.t1|Name=Gcaud2318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_1224_length_12411_cov_5.043588:3504..4601+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTCGTCCCGCTCAAGTCGCAATTCGTGAGTGTTATCATAACCTT
AATCTCCACCGTGTCTGAAGCATTCGTCTTCTGCTCTTTCATCAGATTCA
ACCGCTACTATGAGAATCATCGCTTACGCAAAGGAGAACAGCTTCGAATT
CGAGCGCATTTGAATCGATCAAAAATAGCAGCCGCCATTGCAACGATATT
TTTCATTGTGCTCGAACTGTTTGTCTCGTTCTACACTGATCCTGCCAGGA
TTATTAAGAATGAAATCTACTCGTGTGTTTCCCTGGATTCAGTTAGAACA
TTAAGGCAACCAGTGGTCCAATTCATTGATCTCAGGAGTGAAACTGTCAA
GAGCCAGTGTTCGTTCGTGGAAAATGGCATATTCATCCAAAAGGCGGGCA
ACGTAACGGAAGATGGCGGCAGTGTTCTAGTTCAATGCTCCGAAGAAACT
GTATTTTCTTTCAATGCCTCAGAACTACACACCGAGAGGATGCTACCGAC
AATCAAACCGACCATGGGTTGTTCTTCGTGCTCGAATATGGATCCAAGAT
TCGGAGAATGCCTAACTCTTTGTGCTTTTGTCGTCGCACAAAACAATTCT
GTGTTCCACTCGGTGTCAACTTCACCAGAATGGGCGCGGGAAATGGATGC
TAATGGGGAGGCAAAGAATCATTTAACTTATCTGAAGACTGACGTGCATT
TCAGCACTAACGATCTGCAGAAAGAAATGGCACGAAGAGCGGCGGAAACG
TATGCAGACAGTATTACGGATCCTATCGCGCAAAGACGTCGAATTCTTAT
GGGTTTAGAGGAAAGATCTTGTGATTTCTCTGTTGACGGAGGAGAAGGCA
CAGTTGTACCTGTTGCTCTCATTATCGCGATATCGAGTGTTTGGTTGAGT
TCTTTGATTCTGGTTTTGTGTTCACTGTTGCTTCTAGGTCGAAATTTGTT
TGACGTGAGCGATCCGTTGCAGTGGGCTTTTCGCAGCATTCGAAAGGACG
ATGCTCCAATCGAGCGCGACCCAGCGATTAGAATTGAAAAGGGGAAGGAG
GACAGCTCCTTTTTCTTATCCGAAGCTGTGCAACGTGGTCAACGCTGA
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Coding sequence (CDS) from alignment at NODE_1224_length_12411_cov_5.043588:3504..4601+

>Gcaud2318.t1 ID=Gcaud2318.t1|Name=Gcaud2318.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_1224_length_12411_cov_5.043588:3504..4601+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTCGTCCCGCTCAAGTCGCAATTCGTGAGTGTTATCATAACCTT
AATCTCCACCGTGTCTGAAGCATTCGTCTTCTGCTCTTTCATCAGATTCA
ACCGCTACTATGAGAATCATCGCTTACGCAAAGGAGAACAGCTTCGAATT
CGAGCGCATTTGAATCGATCAAAAATAGCAGCCGCCATTGCAACGATATT
TTTCATTGTGCTCGAACTGTTTGTCTCGTTCTACACTGATCCTGCCAGGA
TTATTAAGAATGAAATCTACTCGTGTGTTTCCCTGGATTCAGTTAGAACA
TTAAGGCAACCAGTGGTCCAATTCATTGATCTCAGGAGTGAAACTGTCAA
GAGCCAGTGTTCGTTCGTGGAAAATGGCATATTCATCCAAAAGGCGGGCA
ACGTAACGGAAGATGGCGGCAGTGTTCTAGTTCAATGCTCCGAAGAAACT
GTATTTTCTTTCAATGCCTCAGAACTACACACCGAGAGGATGCTACCGAC
AATCAAACCGACCATGGGTTGTTCTTCGTGCTCGAATATGGATCCAAGAT
TCGGAGAATGCCTAACTCTTTGTGCTTTTGTCGTCGCACAAAACAATTCT
GTGTTCCACTCGGTGTCAACTTCACCAGAATGGGCGCGGGAAATGGATGC
TAATGGGGAGGCAAAGAATCATTTAACTTATCTGAAGACTGACGTGCATT
TCAGCACTAACGATCTGCAGAAAGAAATGGCACGAAGAGCGGCGGAAACG
TATGCAGACAGTATTACGGATCCTATCGCGCAAAGACGTCGAATTCTTAT
GGGTTTAGAGGAAAGATCTTGTGATTTCTCTGTTGACGGAGGAGAAGGCA
CAGTTGTACCTGTTGCTCTCATTATCGCGATATCGAGTGTTTGGTTGAGT
TCTTTGATTCTGGTTTTGTGTTCACTGTTGCTTCTAGGTCGAAATTTGTT
TGACGTGAGCGATCCGTTGCAGTGGGCTTTTCGCAGCATTCGAAAGGACG
ATGCTCCAATCGAGCGCGACCCAGCGATTAGAATTGAAAAGGGGAAGGAG
GACAGCTCCTTTTTCTTATCCGAAGCTGTGCAACGTGGTCAACGCTGA
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