Gcaud1855.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1855.t1
Unique NameGcaud1855.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length94
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1223_length_12420_cov_4.813286contigNODE_1223_length_12420_cov_4.813286:2553..2995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.N00556.1.p
PFAMsRibosomal_L7Ae
Max annot lvl35493|Streptophyta
KEGG koko:K12845
KEGG Pathwayko03008,ko03040,map03008,map03040
KEGG ModuleM00354
Evalue5.37e-43
EggNOG OGsCOG1358@1|root,KOG3387@2759|Eukaryota,37TYV@33090|Viridiplantae,3GHYI@35493|Streptophyta,44RCQ@71274|asterids
DescriptionRibosomal protein L7Ae/L30e/S12e/Gadd45 family
COG categoryAJ
BRITEko00000,ko00001,ko00002,ko03009,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1855Gcaud1855Gracilaria caudata M_176_S67 malegeneNODE_1223_length_12420_cov_4.813286 2553..2995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1Gcaud1855.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1223_length_12420_cov_4.813286 2553..2995 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1.start1Gcaud1855.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1223_length_12420_cov_4.813286 2553..2555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1.CDS1Gcaud1855.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1223_length_12420_cov_4.813286 2553..2561 +
Gcaud1855.t1.CDS2Gcaud1855.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1223_length_12420_cov_4.813286 2656..2904 +
Gcaud1855.t1.CDS3Gcaud1855.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1223_length_12420_cov_4.813286 2972..2995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1.exon1Gcaud1855.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1223_length_12420_cov_4.813286 2553..2561 +
Gcaud1855.t1.exon2Gcaud1855.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1223_length_12420_cov_4.813286 2656..2904 +
Gcaud1855.t1.exon3Gcaud1855.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1223_length_12420_cov_4.813286 2972..2995 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1.intron1Gcaud1855.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1223_length_12420_cov_4.813286 2562..2655 +
Gcaud1855.t1.intron2Gcaud1855.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1223_length_12420_cov_4.813286 2905..2971 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1855.t1.stop1Gcaud1855.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1223_length_12420_cov_4.813286 2993..2995 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1855.t1 ID=Gcaud1855.t1|Name=Gcaud1855.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=94bp
MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQ
SEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKDPPFPLR*
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spliced messenger RNA

>Gcaud1855.t1 ID=Gcaud1855.t1|Name=Gcaud1855.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=282bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:2553..2995+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAAACAAGAAGCTAATCCAAAAGCAGTGCCCATGGCTGACGCAGA
ACTTTCCGTCAAAATTCTAGACCTCGTGCAACAATCTGCAAACTACAAAC
AAATGAAAAAAGGAGCCAACGAAGCTACAAAGACACTTAACCGCGGTCAG
TCGGAGTTCATCGTGATGGCCGGCGATGCTGAGCCACTGGAAATTCTTCT
GCACTTGCCACTGCTCTGCGAGGACAAGAACGTGCCATACGTTTTTGTGC
CATCTAAAGATCCCCCATTTCCGCTCAGGTGA
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protein sequence of Gcaud1855.t1

>Gcaud1855.t1 ID=Gcaud1855.t1|Name=Gcaud1855.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=94bp
MTKQEANPKAVPMADAELSVKILDLVQQSANYKQMKKGANEATKTLNRGQ
SEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKDPPFPLR*
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mRNA from alignment at NODE_1223_length_12420_cov_4.813286:2553..2995+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1855.t1 ID=Gcaud1855.t1|Name=Gcaud1855.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=443bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:2553..2995+ (Gracilaria caudata M_176_S67 male)
ATGACGAAAGTAGGTCTTGCGTATTCATCTGCCACAACCTTCGACGATTC
AGCGAAATGCAAAGAACGCGTTAACTAACATGCTTCATATCACCCAACCA
CAGCAAGAAGCTAATCCAAAAGCAGTGCCCATGGCTGACGCAGAACTTTC
CGTCAAAATTCTAGACCTCGTGCAACAATCTGCAAACTACAAACAAATGA
AAAAAGGAGCCAACGAAGCTACAAAGACACTTAACCGCGGTCAGTCGGAG
TTCATCGTGATGGCCGGCGATGCTGAGCCACTGGAAATTCTTCTGCACTT
GCCACTGCTCTGCGAGGACAAGAACGTGCCATACGTTTTTGTGCCATCTA
AAGTGAGTTTGGGACGGGCGTGTGGTGTACCTAGACCTGTCATCGCCTGT
TCGATCCTGACAAATGAAGGATCCCCCATTTCCGCTCAGGTGA
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Coding sequence (CDS) from alignment at NODE_1223_length_12420_cov_4.813286:2553..2995+

>Gcaud1855.t1 ID=Gcaud1855.t1|Name=Gcaud1855.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=282bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:2553..2995+ (Gracilaria caudata M_176_S67 male)
ATGACGAAACAAGAAGCTAATCCAAAAGCAGTGCCCATGGCTGACGCAGA
ACTTTCCGTCAAAATTCTAGACCTCGTGCAACAATCTGCAAACTACAAAC
AAATGAAAAAAGGAGCCAACGAAGCTACAAAGACACTTAACCGCGGTCAG
TCGGAGTTCATCGTGATGGCCGGCGATGCTGAGCCACTGGAAATTCTTCT
GCACTTGCCACTGCTCTGCGAGGACAAGAACGTGCCATACGTTTTTGTGC
CATCTAAAGATCCCCCATTTCCGCTCAGGTGA
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