Gcaud1859.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1859.t1
Unique NameGcaud1859.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1223_length_12420_cov_4.813286contigNODE_1223_length_12420_cov_4.813286:9795..10283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1859Gcaud1859Gracilaria caudata M_176_S67 malegeneNODE_1223_length_12420_cov_4.813286 9795..10283 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1859.t1.stop1Gcaud1859.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1223_length_12420_cov_4.813286 9795..9797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1859.t1.CDS1Gcaud1859.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1223_length_12420_cov_4.813286 9795..10283 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1859.t1.exon1Gcaud1859.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1223_length_12420_cov_4.813286 9795..10283 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1859.t1.start1Gcaud1859.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1223_length_12420_cov_4.813286 10281..10283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1859.t1Gcaud1859.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1223_length_12420_cov_4.813286 9795..10283 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1859.t1 ID=Gcaud1859.t1|Name=Gcaud1859.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MPKDRSKASKAHRPTSPTRTKHSHHSKSPKQKNVTAPHTSPPSPPPSTEK
VRDIQLADVERGRDYQRDSPVTIFLAGLLGFVIGLLLGLLIALVVSVIVC
CCFYDARGWWRDRKKRAFLIGFILGILVAIVIVLIVALALGIRDRDREVI
AVPAGTTPVIIS*
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spliced messenger RNA

>Gcaud1859.t1 ID=Gcaud1859.t1|Name=Gcaud1859.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:9795..10283- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAGGACCGTTCCAAAGCTTCCAAAGCTCATCGACCAACCTCGCC
AACTCGTACTAAGCATTCACATCATTCCAAATCACCCAAACAGAAAAATG
TTACTGCCCCGCATACATCGCCTCCCAGTCCACCTCCTTCTACCGAGAAA
GTTCGCGACATTCAGCTGGCCGATGTAGAGCGTGGTCGAGACTATCAACG
AGACTCTCCTGTCACAATCTTTTTAGCTGGCTTGCTCGGATTTGTAATTG
GTTTACTTCTCGGCCTTCTGATAGCGCTTGTGGTAAGCGTTATTGTATGC
TGTTGTTTCTATGATGCACGTGGTTGGTGGAGAGATAGAAAGAAAAGGGC
CTTCCTTATTGGCTTCATACTCGGAATCTTGGTCGCAATTGTCATTGTGC
TCATTGTGGCCCTCGCTCTCGGTATACGTGATCGTGATCGAGAGGTAATT
GCCGTTCCTGCTGGGACCACCCCAGTTATAATCAGCTGA
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protein sequence of Gcaud1859.t1

>Gcaud1859.t1 ID=Gcaud1859.t1|Name=Gcaud1859.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MPKDRSKASKAHRPTSPTRTKHSHHSKSPKQKNVTAPHTSPPSPPPSTEK
VRDIQLADVERGRDYQRDSPVTIFLAGLLGFVIGLLLGLLIALVVSVIVC
CCFYDARGWWRDRKKRAFLIGFILGILVAIVIVLIVALALGIRDRDREVI
AVPAGTTPVIIS*
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mRNA from alignment at NODE_1223_length_12420_cov_4.813286:9795..10283-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1859.t1 ID=Gcaud1859.t1|Name=Gcaud1859.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:9795..10283- (Gracilaria caudata M_176_S67 male)
ATGCCAAAGGACCGTTCCAAAGCTTCCAAAGCTCATCGACCAACCTCGCC
AACTCGTACTAAGCATTCACATCATTCCAAATCACCCAAACAGAAAAATG
TTACTGCCCCGCATACATCGCCTCCCAGTCCACCTCCTTCTACCGAGAAA
GTTCGCGACATTCAGCTGGCCGATGTAGAGCGTGGTCGAGACTATCAACG
AGACTCTCCTGTCACAATCTTTTTAGCTGGCTTGCTCGGATTTGTAATTG
GTTTACTTCTCGGCCTTCTGATAGCGCTTGTGGTAAGCGTTATTGTATGC
TGTTGTTTCTATGATGCACGTGGTTGGTGGAGAGATAGAAAGAAAAGGGC
CTTCCTTATTGGCTTCATACTCGGAATCTTGGTCGCAATTGTCATTGTGC
TCATTGTGGCCCTCGCTCTCGGTATACGTGATCGTGATCGAGAGGTAATT
GCCGTTCCTGCTGGGACCACCCCAGTTATAATCAGCTGA
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Coding sequence (CDS) from alignment at NODE_1223_length_12420_cov_4.813286:9795..10283-

>Gcaud1859.t1 ID=Gcaud1859.t1|Name=Gcaud1859.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:9795..10283- (Gracilaria caudata M_176_S67 male)
ATGCCAAAGGACCGTTCCAAAGCTTCCAAAGCTCATCGACCAACCTCGCC
AACTCGTACTAAGCATTCACATCATTCCAAATCACCCAAACAGAAAAATG
TTACTGCCCCGCATACATCGCCTCCCAGTCCACCTCCTTCTACCGAGAAA
GTTCGCGACATTCAGCTGGCCGATGTAGAGCGTGGTCGAGACTATCAACG
AGACTCTCCTGTCACAATCTTTTTAGCTGGCTTGCTCGGATTTGTAATTG
GTTTACTTCTCGGCCTTCTGATAGCGCTTGTGGTAAGCGTTATTGTATGC
TGTTGTTTCTATGATGCACGTGGTTGGTGGAGAGATAGAAAGAAAAGGGC
CTTCCTTATTGGCTTCATACTCGGAATCTTGGTCGCAATTGTCATTGTGC
TCATTGTGGCCCTCGCTCTCGGTATACGTGATCGTGATCGAGAGGTAATT
GCCGTTCCTGCTGGGACCACCCCAGTTATAATCAGCTGA
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