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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 3055.EDP07462 |
| PFAMs | RRM_1 |
| Max annot lvl | 3041|Chlorophyta |
| KEGG ko | ko:K14573 |
| KEGG Pathway | ko03008,map03008 |
| Evalue | 4.91e-44 |
| EggNOG OGs | KOG0127@1|root,KOG0127@2759|Eukaryota,37NXK@33090|Viridiplantae,34GQB@3041|Chlorophyta |
| Description | RNA recognition motif |
| COG category | A |
| BRITE | ko00000,ko00001,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1857.t1.start1 | Gcaud1857.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1223_length_12420_cov_4.813286 4280..4282 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1857.t1.stop1 | Gcaud1857.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1223_length_12420_cov_4.813286 6911..6913 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1857.t1 ID=Gcaud1857.t1|Name=Gcaud1857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=878bp MKSATKQTRSAKESQDRKTLFVRNLHESVTKENLESHFGGIGPLRHAFLV TTPGSDFCKGYGFVTFAFSEDADRARTVLDQSLLKGRKISLDIARKRFRS SNEKPDDRTQQDKQSKEASAQPRKEKKNSAHGSVPMRTVLLRKLSPGDTL TEEEAKKAVGAHLEASGFQTCVLTSDGRQARCMYDSWSNAGKAAGRAHGG AIDAVIEALKAGQRTKLIVRNLPFRVDELQLRAAFEAIAPVRSLRLAPSS ELRRHDTHRAKKQASDSRAGKDNNAGKSESSFVPCAGYAFIEYFLVAHAQ TAVRTLNATKIGGRVIAVDMAVSKSQYVTQNPSQEHENASDASDDPTEEE HGQNGQTEKESSASGLAIENLRPVSPEEMKKHKSRSEQELNDQKPRQRRT EDEKGELRRTVFFRNVLFETSVHELRKAVEERFGNVQKVLIVKDPTTGRP RGTAFVIFKDEKTAREAVRQTSASESGDAEHLPTTAPADFVLHGRKLLLS MAVDRSTAKDLKSTIPLHTRKNQDADPRNLRLAWVGHIAPDSKQAKGLSP NDVSRRAKAEKEKQTKLERNPNAFISEVRLSVRNLPRECDEKALKQIFLL SAQERAGHEEGETSVGFPKITHLTIVRDSERNGRSKGYGFVQFSEHQHAM QALRHMNNNPRLIEWIIQKKPKPLRIDDTRAELMRKQWRNRRLIVEFAVE DKRIVQVLDRVREKGKQQVTKKRKKADSDGQELPKRKKSKQAVEDKPAKN DNEPTADDPKYLNDTSQSRSERRFRHKRKQLSSTQSTNMTRSHNGRSEAS DGPAHMEKIGRKLSKETQVGKDKKKRSKRTAQDVKFDHLVDKYRKKIANV GGKPRSDSVNKHQKNETGPSVRWFETS* back to topspliced messenger RNA >Gcaud1857.t1 ID=Gcaud1857.t1|Name=Gcaud1857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2634bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:4280..6913+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGTCGGCTACAAAGCAGACCAGGAGCGCGAAGGAATCTCAGGACAG AAAGACTTTGTTCGTGAGAAACCTTCACGAGTCGGTGACAAAGGAAAATC TAGAATCTCACTTTGGGGGCATTGGGCCCCTACGACATGCCTTTCTGGTC ACCACACCGGGCTCAGACTTTTGCAAAGGATATGGGTTTGTCACTTTTGC ATTTTCAGAGGATGCAGATCGCGCACGAACTGTTCTTGATCAATCACTGC TGAAGGGGAGAAAGATATCTTTGGATATTGCTCGAAAAAGATTTCGGAGC AGCAATGAAAAGCCCGACGACCGTACACAGCAAGACAAACAATCGAAGGA AGCTTCAGCGCAACCAAGAAAAGAAAAGAAAAACTCGGCTCACGGTTCTG TCCCTATGCGCACTGTTTTGCTCCGCAAGTTGTCTCCAGGAGATACTTTA ACAGAGGAAGAGGCTAAGAAAGCCGTGGGAGCGCATCTAGAAGCATCTGG TTTCCAAACTTGTGTTCTTACGTCAGATGGTAGGCAGGCAAGATGTATGT ATGACTCGTGGTCAAATGCAGGAAAAGCCGCCGGTCGTGCCCATGGAGGT GCAATAGACGCTGTGATTGAGGCTTTAAAAGCAGGGCAAAGGACGAAGCT CATTGTGAGGAATCTTCCTTTTAGAGTTGATGAGCTACAGCTCCGAGCTG CATTCGAAGCCATTGCCCCCGTTCGATCATTGCGCTTAGCGCCCTCGAGC GAGCTTCGAAGGCATGATACGCATAGAGCTAAAAAGCAGGCTTCTGACTC TCGTGCCGGAAAGGACAACAACGCCGGTAAGTCTGAGTCAAGCTTTGTCC CTTGCGCTGGTTACGCATTCATAGAATACTTTCTTGTGGCACATGCTCAG ACAGCTGTAAGGACACTTAATGCAACGAAGATTGGTGGAAGAGTAATTGC AGTCGATATGGCAGTCAGCAAATCTCAGTATGTGACCCAAAATCCGAGTC AGGAACACGAGAATGCATCAGATGCTAGCGATGACCCTACTGAAGAAGAA CATGGGCAAAATGGGCAAACTGAGAAAGAAAGCTCTGCATCCGGACTTGC GATCGAAAATCTGCGACCAGTAAGTCCAGAAGAGATGAAGAAGCACAAGT CTCGCAGCGAACAAGAGCTAAATGATCAAAAGCCACGTCAAAGAAGAACG GAGGACGAAAAAGGCGAGCTCCGTCGAACTGTGTTTTTCAGGAACGTTCT GTTCGAAACTTCAGTTCATGAACTTCGCAAGGCAGTCGAAGAAAGGTTCG GCAACGTGCAAAAGGTGTTGATTGTGAAGGATCCTACAACTGGACGACCA CGTGGAACGGCATTTGTCATTTTCAAAGATGAGAAAACCGCGAGGGAAGC TGTACGTCAGACATCAGCGTCAGAATCCGGAGACGCTGAGCACTTACCAA CCACGGCTCCAGCAGATTTTGTGTTGCATGGTCGAAAATTGCTTCTCTCG ATGGCCGTGGACCGCTCGACCGCAAAAGACTTGAAATCTACAATACCTCT ACACACAAGAAAAAACCAGGACGCTGACCCAAGAAACCTCCGCCTAGCTT GGGTTGGGCACATTGCCCCTGACTCCAAACAAGCTAAAGGGCTCTCTCCC AATGATGTTTCAAGACGGGCAAAAGCAGAGAAGGAAAAACAGACGAAGCT CGAAAGAAACCCGAATGCGTTTATCTCTGAAGTTCGTTTATCCGTTCGAA ATTTGCCAAGGGAGTGTGATGAGAAGGCGCTAAAGCAAATTTTCCTACTC AGTGCTCAAGAGAGAGCTGGGCATGAGGAAGGGGAAACTAGTGTGGGTTT TCCAAAAATAACGCATCTGACGATAGTGCGGGATTCGGAAAGAAATGGTA GATCGAAAGGTTATGGGTTTGTGCAATTCTCGGAGCACCAGCATGCAATG CAAGCCTTACGTCACATGAACAACAACCCACGTTTGATTGAATGGATTAT TCAGAAGAAGCCAAAACCTCTACGCATCGACGACACTCGTGCGGAACTTA TGCGAAAACAATGGAGAAATCGTCGCCTTATTGTTGAATTTGCTGTTGAA GACAAACGCATTGTTCAAGTTCTTGACAGAGTTCGCGAGAAAGGAAAGCA GCAAGTAACAAAGAAGCGGAAGAAGGCGGATAGCGACGGTCAGGAATTAC CAAAAAGAAAGAAGTCAAAGCAGGCGGTAGAGGATAAACCCGCCAAGAAC GACAACGAGCCTACTGCTGATGACCCGAAATATTTGAATGACACTTCACA ATCGAGGTCGGAAAGGCGCTTTCGCCATAAACGAAAGCAACTCAGCTCTA CACAATCTACGAATATGACTCGGTCACACAATGGTAGGAGCGAGGCTTCA GACGGTCCAGCCCATATGGAAAAGATTGGACGAAAATTATCGAAAGAGAC ACAGGTTGGCAAAGATAAGAAAAAGAGGTCAAAGAGGACGGCACAAGATG TGAAGTTTGATCACCTCGTTGATAAGTATAGGAAGAAAATAGCAAATGTA GGCGGAAAGCCGAGAAGCGATTCTGTGAACAAGCACCAAAAGAACGAAAC TGGACCCTCGGTAAGATGGTTTGAAACCTCCTAG back to topprotein sequence of Gcaud1857.t1 >Gcaud1857.t1 ID=Gcaud1857.t1|Name=Gcaud1857.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=878bp
MKSATKQTRSAKESQDRKTLFVRNLHESVTKENLESHFGGIGPLRHAFLV TTPGSDFCKGYGFVTFAFSEDADRARTVLDQSLLKGRKISLDIARKRFRS SNEKPDDRTQQDKQSKEASAQPRKEKKNSAHGSVPMRTVLLRKLSPGDTL TEEEAKKAVGAHLEASGFQTCVLTSDGRQARCMYDSWSNAGKAAGRAHGG AIDAVIEALKAGQRTKLIVRNLPFRVDELQLRAAFEAIAPVRSLRLAPSS ELRRHDTHRAKKQASDSRAGKDNNAGKSESSFVPCAGYAFIEYFLVAHAQ TAVRTLNATKIGGRVIAVDMAVSKSQYVTQNPSQEHENASDASDDPTEEE HGQNGQTEKESSASGLAIENLRPVSPEEMKKHKSRSEQELNDQKPRQRRT EDEKGELRRTVFFRNVLFETSVHELRKAVEERFGNVQKVLIVKDPTTGRP RGTAFVIFKDEKTAREAVRQTSASESGDAEHLPTTAPADFVLHGRKLLLS MAVDRSTAKDLKSTIPLHTRKNQDADPRNLRLAWVGHIAPDSKQAKGLSP NDVSRRAKAEKEKQTKLERNPNAFISEVRLSVRNLPRECDEKALKQIFLL SAQERAGHEEGETSVGFPKITHLTIVRDSERNGRSKGYGFVQFSEHQHAM QALRHMNNNPRLIEWIIQKKPKPLRIDDTRAELMRKQWRNRRLIVEFAVE DKRIVQVLDRVREKGKQQVTKKRKKADSDGQELPKRKKSKQAVEDKPAKN DNEPTADDPKYLNDTSQSRSERRFRHKRKQLSSTQSTNMTRSHNGRSEAS DGPAHMEKIGRKLSKETQVGKDKKKRSKRTAQDVKFDHLVDKYRKKIANV GGKPRSDSVNKHQKNETGPSVRWFETS* back to topmRNA from alignment at NODE_1223_length_12420_cov_4.813286:4280..6913+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1857.t1 ID=Gcaud1857.t1|Name=Gcaud1857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2634bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:4280..6913+ (Gracilaria caudata M_176_S67 male) ATGAAGTCGGCTACAAAGCAGACCAGGAGCGCGAAGGAATCTCAGGACAG
AAAGACTTTGTTCGTGAGAAACCTTCACGAGTCGGTGACAAAGGAAAATC
TAGAATCTCACTTTGGGGGCATTGGGCCCCTACGACATGCCTTTCTGGTC
ACCACACCGGGCTCAGACTTTTGCAAAGGATATGGGTTTGTCACTTTTGC
ATTTTCAGAGGATGCAGATCGCGCACGAACTGTTCTTGATCAATCACTGC
TGAAGGGGAGAAAGATATCTTTGGATATTGCTCGAAAAAGATTTCGGAGC
AGCAATGAAAAGCCCGACGACCGTACACAGCAAGACAAACAATCGAAGGA
AGCTTCAGCGCAACCAAGAAAAGAAAAGAAAAACTCGGCTCACGGTTCTG
TCCCTATGCGCACTGTTTTGCTCCGCAAGTTGTCTCCAGGAGATACTTTA
ACAGAGGAAGAGGCTAAGAAAGCCGTGGGAGCGCATCTAGAAGCATCTGG
TTTCCAAACTTGTGTTCTTACGTCAGATGGTAGGCAGGCAAGATGTATGT
ATGACTCGTGGTCAAATGCAGGAAAAGCCGCCGGTCGTGCCCATGGAGGT
GCAATAGACGCTGTGATTGAGGCTTTAAAAGCAGGGCAAAGGACGAAGCT
CATTGTGAGGAATCTTCCTTTTAGAGTTGATGAGCTACAGCTCCGAGCTG
CATTCGAAGCCATTGCCCCCGTTCGATCATTGCGCTTAGCGCCCTCGAGC
GAGCTTCGAAGGCATGATACGCATAGAGCTAAAAAGCAGGCTTCTGACTC
TCGTGCCGGAAAGGACAACAACGCCGGTAAGTCTGAGTCAAGCTTTGTCC
CTTGCGCTGGTTACGCATTCATAGAATACTTTCTTGTGGCACATGCTCAG
ACAGCTGTAAGGACACTTAATGCAACGAAGATTGGTGGAAGAGTAATTGC
AGTCGATATGGCAGTCAGCAAATCTCAGTATGTGACCCAAAATCCGAGTC
AGGAACACGAGAATGCATCAGATGCTAGCGATGACCCTACTGAAGAAGAA
CATGGGCAAAATGGGCAAACTGAGAAAGAAAGCTCTGCATCCGGACTTGC
GATCGAAAATCTGCGACCAGTAAGTCCAGAAGAGATGAAGAAGCACAAGT
CTCGCAGCGAACAAGAGCTAAATGATCAAAAGCCACGTCAAAGAAGAACG
GAGGACGAAAAAGGCGAGCTCCGTCGAACTGTGTTTTTCAGGAACGTTCT
GTTCGAAACTTCAGTTCATGAACTTCGCAAGGCAGTCGAAGAAAGGTTCG
GCAACGTGCAAAAGGTGTTGATTGTGAAGGATCCTACAACTGGACGACCA
CGTGGAACGGCATTTGTCATTTTCAAAGATGAGAAAACCGCGAGGGAAGC
TGTACGTCAGACATCAGCGTCAGAATCCGGAGACGCTGAGCACTTACCAA
CCACGGCTCCAGCAGATTTTGTGTTGCATGGTCGAAAATTGCTTCTCTCG
ATGGCCGTGGACCGCTCGACCGCAAAAGACTTGAAATCTACAATACCTCT
ACACACAAGAAAAAACCAGGACGCTGACCCAAGAAACCTCCGCCTAGCTT
GGGTTGGGCACATTGCCCCTGACTCCAAACAAGCTAAAGGGCTCTCTCCC
AATGATGTTTCAAGACGGGCAAAAGCAGAGAAGGAAAAACAGACGAAGCT
CGAAAGAAACCCGAATGCGTTTATCTCTGAAGTTCGTTTATCCGTTCGAA
ATTTGCCAAGGGAGTGTGATGAGAAGGCGCTAAAGCAAATTTTCCTACTC
AGTGCTCAAGAGAGAGCTGGGCATGAGGAAGGGGAAACTAGTGTGGGTTT
TCCAAAAATAACGCATCTGACGATAGTGCGGGATTCGGAAAGAAATGGTA
GATCGAAAGGTTATGGGTTTGTGCAATTCTCGGAGCACCAGCATGCAATG
CAAGCCTTACGTCACATGAACAACAACCCACGTTTGATTGAATGGATTAT
TCAGAAGAAGCCAAAACCTCTACGCATCGACGACACTCGTGCGGAACTTA
TGCGAAAACAATGGAGAAATCGTCGCCTTATTGTTGAATTTGCTGTTGAA
GACAAACGCATTGTTCAAGTTCTTGACAGAGTTCGCGAGAAAGGAAAGCA
GCAAGTAACAAAGAAGCGGAAGAAGGCGGATAGCGACGGTCAGGAATTAC
CAAAAAGAAAGAAGTCAAAGCAGGCGGTAGAGGATAAACCCGCCAAGAAC
GACAACGAGCCTACTGCTGATGACCCGAAATATTTGAATGACACTTCACA
ATCGAGGTCGGAAAGGCGCTTTCGCCATAAACGAAAGCAACTCAGCTCTA
CACAATCTACGAATATGACTCGGTCACACAATGGTAGGAGCGAGGCTTCA
GACGGTCCAGCCCATATGGAAAAGATTGGACGAAAATTATCGAAAGAGAC
ACAGGTTGGCAAAGATAAGAAAAAGAGGTCAAAGAGGACGGCACAAGATG
TGAAGTTTGATCACCTCGTTGATAAGTATAGGAAGAAAATAGCAAATGTA
GGCGGAAAGCCGAGAAGCGATTCTGTGAACAAGCACCAAAAGAACGAAAC
TGGACCCTCGGTAAGATGGTTTGAAACCTCCTAG back to topCoding sequence (CDS) from alignment at NODE_1223_length_12420_cov_4.813286:4280..6913+ >Gcaud1857.t1 ID=Gcaud1857.t1|Name=Gcaud1857.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2634bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:4280..6913+ (Gracilaria caudata M_176_S67 male) ATGAAGTCGGCTACAAAGCAGACCAGGAGCGCGAAGGAATCTCAGGACAG AAAGACTTTGTTCGTGAGAAACCTTCACGAGTCGGTGACAAAGGAAAATC TAGAATCTCACTTTGGGGGCATTGGGCCCCTACGACATGCCTTTCTGGTC ACCACACCGGGCTCAGACTTTTGCAAAGGATATGGGTTTGTCACTTTTGC ATTTTCAGAGGATGCAGATCGCGCACGAACTGTTCTTGATCAATCACTGC TGAAGGGGAGAAAGATATCTTTGGATATTGCTCGAAAAAGATTTCGGAGC AGCAATGAAAAGCCCGACGACCGTACACAGCAAGACAAACAATCGAAGGA AGCTTCAGCGCAACCAAGAAAAGAAAAGAAAAACTCGGCTCACGGTTCTG TCCCTATGCGCACTGTTTTGCTCCGCAAGTTGTCTCCAGGAGATACTTTA ACAGAGGAAGAGGCTAAGAAAGCCGTGGGAGCGCATCTAGAAGCATCTGG TTTCCAAACTTGTGTTCTTACGTCAGATGGTAGGCAGGCAAGATGTATGT ATGACTCGTGGTCAAATGCAGGAAAAGCCGCCGGTCGTGCCCATGGAGGT GCAATAGACGCTGTGATTGAGGCTTTAAAAGCAGGGCAAAGGACGAAGCT CATTGTGAGGAATCTTCCTTTTAGAGTTGATGAGCTACAGCTCCGAGCTG CATTCGAAGCCATTGCCCCCGTTCGATCATTGCGCTTAGCGCCCTCGAGC GAGCTTCGAAGGCATGATACGCATAGAGCTAAAAAGCAGGCTTCTGACTC TCGTGCCGGAAAGGACAACAACGCCGGTAAGTCTGAGTCAAGCTTTGTCC CTTGCGCTGGTTACGCATTCATAGAATACTTTCTTGTGGCACATGCTCAG ACAGCTGTAAGGACACTTAATGCAACGAAGATTGGTGGAAGAGTAATTGC AGTCGATATGGCAGTCAGCAAATCTCAGTATGTGACCCAAAATCCGAGTC AGGAACACGAGAATGCATCAGATGCTAGCGATGACCCTACTGAAGAAGAA CATGGGCAAAATGGGCAAACTGAGAAAGAAAGCTCTGCATCCGGACTTGC GATCGAAAATCTGCGACCAGTAAGTCCAGAAGAGATGAAGAAGCACAAGT CTCGCAGCGAACAAGAGCTAAATGATCAAAAGCCACGTCAAAGAAGAACG GAGGACGAAAAAGGCGAGCTCCGTCGAACTGTGTTTTTCAGGAACGTTCT GTTCGAAACTTCAGTTCATGAACTTCGCAAGGCAGTCGAAGAAAGGTTCG GCAACGTGCAAAAGGTGTTGATTGTGAAGGATCCTACAACTGGACGACCA CGTGGAACGGCATTTGTCATTTTCAAAGATGAGAAAACCGCGAGGGAAGC TGTACGTCAGACATCAGCGTCAGAATCCGGAGACGCTGAGCACTTACCAA CCACGGCTCCAGCAGATTTTGTGTTGCATGGTCGAAAATTGCTTCTCTCG ATGGCCGTGGACCGCTCGACCGCAAAAGACTTGAAATCTACAATACCTCT ACACACAAGAAAAAACCAGGACGCTGACCCAAGAAACCTCCGCCTAGCTT GGGTTGGGCACATTGCCCCTGACTCCAAACAAGCTAAAGGGCTCTCTCCC AATGATGTTTCAAGACGGGCAAAAGCAGAGAAGGAAAAACAGACGAAGCT CGAAAGAAACCCGAATGCGTTTATCTCTGAAGTTCGTTTATCCGTTCGAA ATTTGCCAAGGGAGTGTGATGAGAAGGCGCTAAAGCAAATTTTCCTACTC AGTGCTCAAGAGAGAGCTGGGCATGAGGAAGGGGAAACTAGTGTGGGTTT TCCAAAAATAACGCATCTGACGATAGTGCGGGATTCGGAAAGAAATGGTA GATCGAAAGGTTATGGGTTTGTGCAATTCTCGGAGCACCAGCATGCAATG CAAGCCTTACGTCACATGAACAACAACCCACGTTTGATTGAATGGATTAT TCAGAAGAAGCCAAAACCTCTACGCATCGACGACACTCGTGCGGAACTTA TGCGAAAACAATGGAGAAATCGTCGCCTTATTGTTGAATTTGCTGTTGAA GACAAACGCATTGTTCAAGTTCTTGACAGAGTTCGCGAGAAAGGAAAGCA GCAAGTAACAAAGAAGCGGAAGAAGGCGGATAGCGACGGTCAGGAATTAC CAAAAAGAAAGAAGTCAAAGCAGGCGGTAGAGGATAAACCCGCCAAGAAC GACAACGAGCCTACTGCTGATGACCCGAAATATTTGAATGACACTTCACA ATCGAGGTCGGAAAGGCGCTTTCGCCATAAACGAAAGCAACTCAGCTCTA CACAATCTACGAATATGACTCGGTCACACAATGGTAGGAGCGAGGCTTCA GACGGTCCAGCCCATATGGAAAAGATTGGACGAAAATTATCGAAAGAGAC ACAGGTTGGCAAAGATAAGAAAAAGAGGTCAAAGAGGACGGCACAAGATG TGAAGTTTGATCACCTCGTTGATAAGTATAGGAAGAAAATAGCAAATGTA GGCGGAAAGCCGAGAAGCGATTCTGTGAACAAGCACCAAAAGAACGAAAC TGGACCCTCGGTAAGATGGTTTGAAACCTCCTAG back to top
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