Gcaud3771.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3771.t1
Unique NameGcaud3771.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_94_length_52825_cov_4.981075contigNODE_94_length_52825_cov_4.981075:36976..37952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704706.1
Preferred nameMSRA
PFAMsPMSR
Max annot lvl2759|Eukaryota
KEGG koko:K07304
GOsGO:0000096,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0007568,GO:0008113,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0015629,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0019752,GO:0030091,GO:0031974,GO:0031981,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901605
Evalue4.52e-82
EggNOG OGsCOG0225@1|root,KOG1635@2759|Eukaryota
EC1.8.4.11
Descriptionpeptide-methionine (S)-S-oxide reductase activity
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3771Gcaud3771Gracilaria caudata M_176_S67 malegeneNODE_94_length_52825_cov_4.981075 36976..37952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3771.t1Gcaud3771.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_94_length_52825_cov_4.981075 36976..37952 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3771.t1.stop1Gcaud3771.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_94_length_52825_cov_4.981075 36976..36978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3771.t1.CDS1Gcaud3771.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 36976..37055 -
Gcaud3771.t1.CDS2Gcaud3771.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 37145..37294 -
Gcaud3771.t1.CDS3Gcaud3771.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 37379..37499 -
Gcaud3771.t1.CDS4Gcaud3771.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 37588..37717 -
Gcaud3771.t1.CDS5Gcaud3771.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 37789..37952 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3771.t1.exon1Gcaud3771.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 36976..37055 -
Gcaud3771.t1.exon2Gcaud3771.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 37145..37294 -
Gcaud3771.t1.exon3Gcaud3771.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 37379..37499 -
Gcaud3771.t1.exon4Gcaud3771.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 37588..37717 -
Gcaud3771.t1.exon5Gcaud3771.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 37789..37952 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3771.t1.intron1Gcaud3771.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 37056..37144 -
Gcaud3771.t1.intron2Gcaud3771.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 37295..37378 -
Gcaud3771.t1.intron3Gcaud3771.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 37500..37587 -
Gcaud3771.t1.intron4Gcaud3771.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 37718..37788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3771.t1.start1Gcaud3771.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_94_length_52825_cov_4.981075 37950..37952 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3771.t1 ID=Gcaud3771.t1|Name=Gcaud3771.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MGPFVWFQNLKRPNTSMTATPIAPPSKHVVLGTPIAPPPGGWQAPLQVAM
FGLGCFWGAERKFWKKEGVYTTSVGYAGGETEFPTYRQVCSGRTGHAEVV
NVVFDSSKISYEDMLNVFWEAHDPTQKNRQGNDVGTQYRSVIYYYNEEQK
QAAEETRTHFNALLEEAGRKSIATEIQPAPQYFYAEEYHQQYLHKNPMGY
CGLGGTGLYMPRKM*
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spliced messenger RNA

>Gcaud3771.t1 ID=Gcaud3771.t1|Name=Gcaud3771.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:36976..37952- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCCTTTCGTCTGGTTTCAGAACTTGAAGCGACCGAATACCTCCAT
GACAGCAACTCCCATAGCACCGCCGTCGAAACACGTCGTTTTAGGTACTC
CCATCGCTCCACCACCTGGAGGATGGCAAGCTCCACTCCAAGTGGCCATG
TTTGGACTAGGATGCTTCTGGGGTGCTGAAAGGAAGTTCTGGAAGAAGGA
GGGAGTGTACACTACCAGTGTGGGTTACGCAGGTGGCGAAACGGAATTTC
CCACGTACAGACAAGTGTGTTCTGGCCGGACAGGTCATGCTGAGGTTGTC
AATGTCGTGTTTGACAGTTCGAAAATTTCATATGAGGATATGCTGAATGT
CTTTTGGGAAGCTCACGACCCAACGCAGAAGAACAGGCAAGGAAACGACG
TCGGCACACAGTATCGTTCTGTGATCTACTACTACAATGAAGAACAAAAG
CAGGCCGCGGAAGAGACTCGAACCCACTTCAACGCATTACTAGAAGAAGC
TGGTCGCAAGAGTATTGCCACTGAGATCCAACCAGCCCCCCAGTATTTCT
ATGCTGAAGAATACCATCAGCAATACCTACACAAGAACCCAATGGGCTAT
TGCGGACTTGGCGGAACTGGACTTTATATGCCGAGGAAGATGTGA
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protein sequence of Gcaud3771.t1

>Gcaud3771.t1 ID=Gcaud3771.t1|Name=Gcaud3771.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MGPFVWFQNLKRPNTSMTATPIAPPSKHVVLGTPIAPPPGGWQAPLQVAM
FGLGCFWGAERKFWKKEGVYTTSVGYAGGETEFPTYRQVCSGRTGHAEVV
NVVFDSSKISYEDMLNVFWEAHDPTQKNRQGNDVGTQYRSVIYYYNEEQK
QAAEETRTHFNALLEEAGRKSIATEIQPAPQYFYAEEYHQQYLHKNPMGY
CGLGGTGLYMPRKM*
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mRNA from alignment at NODE_94_length_52825_cov_4.981075:36976..37952-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3771.t1 ID=Gcaud3771.t1|Name=Gcaud3771.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=977bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:36976..37952- (Gracilaria caudata M_176_S67 male)
ATGGGTCCTTTCGTCTGGTTTCAGAACTTGAAGCGACCGAATACCTCCAT
GACAGCAACTCCCATAGCACCGCCGTCGAAACACGTCGTTTTAGGTACTC
CCATCGCTCCACCACCTGGAGGATGGCAAGCTCCACTCCAAGTGGCCATG
TTTGGACTAGGATGGTATGTTTGAAAGCACGCGTGAGTTCCTGCGACCAA
ATGCTTACTAACAACGCCTCACCGCCTCAACATAGCTTCTGGGGTGCTGA
AAGGAAGTTCTGGAAGAAGGAGGGAGTGTACACTACCAGTGTGGGTTACG
CAGGTGGCGAAACGGAATTTCCCACGTACAGACAAGTGTGTTCTGGCCGG
ACAGGTCATGCTGAGGTAAGTCGACGCACATCATTTACTGATGAACGCTT
TTCCTTCTGAATGGTCCGACAATGCTAATCGTAAGAACTAATCTTATCAA
CAGGTTGTCAATGTCGTGTTTGACAGTTCGAAAATTTCATATGAGGATAT
GCTGAATGTCTTTTGGGAAGCTCACGACCCAACGCAGAAGAACAGGCAAG
GAAACGACGTCGGCACACAGTATCGTACGTCTCTCTTCTTCATCACCAGA
TTCACTACACTTTTCATATGTGACAATTTCTAACCCATGAGACTTGCGTC
CTCTCTAGGTTCTGTGATCTACTACTACAATGAAGAACAAAAGCAGGCCG
CGGAAGAGACTCGAACCCACTTCAACGCATTACTAGAAGAAGCTGGTCGC
AAGAGTATTGCCACTGAGATCCAACCAGCCCCCCAGTATTTCTATGCTGA
AGAATACCGTAGGTCAATAACCTCTCCTCCAGAACTGCGCGTGTCAAATG
CTTTCTTTGAGGTACTAACTTGTAACAATTCGATTTCCTATAACCAGATC
AGCAATACCTACACAAGAACCCAATGGGCTATTGCGGACTTGGCGGAACT
GGACTTTATATGCCGAGGAAGATGTGA
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Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:36976..37952-

>Gcaud3771.t1 ID=Gcaud3771.t1|Name=Gcaud3771.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:36976..37952- (Gracilaria caudata M_176_S67 male)
ATGGGTCCTTTCGTCTGGTTTCAGAACTTGAAGCGACCGAATACCTCCAT
GACAGCAACTCCCATAGCACCGCCGTCGAAACACGTCGTTTTAGGTACTC
CCATCGCTCCACCACCTGGAGGATGGCAAGCTCCACTCCAAGTGGCCATG
TTTGGACTAGGATGCTTCTGGGGTGCTGAAAGGAAGTTCTGGAAGAAGGA
GGGAGTGTACACTACCAGTGTGGGTTACGCAGGTGGCGAAACGGAATTTC
CCACGTACAGACAAGTGTGTTCTGGCCGGACAGGTCATGCTGAGGTTGTC
AATGTCGTGTTTGACAGTTCGAAAATTTCATATGAGGATATGCTGAATGT
CTTTTGGGAAGCTCACGACCCAACGCAGAAGAACAGGCAAGGAAACGACG
TCGGCACACAGTATCGTTCTGTGATCTACTACTACAATGAAGAACAAAAG
CAGGCCGCGGAAGAGACTCGAACCCACTTCAACGCATTACTAGAAGAAGC
TGGTCGCAAGAGTATTGCCACTGAGATCCAACCAGCCCCCCAGTATTTCT
ATGCTGAAGAATACCATCAGCAATACCTACACAAGAACCCAATGGGCTAT
TGCGGACTTGGCGGAACTGGACTTTATATGCCGAGGAAGATGTGA
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