Gcaud197.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud197.t1
Unique NameGcaud197.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1222_length_12421_cov_10.218491contigNODE_1222_length_12421_cov_10.218491:9711..10340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud197Gcaud197Gracilaria caudata M_176_S67 malegeneNODE_1222_length_12421_cov_10.218491 9711..10340 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud197.t1.start1Gcaud197.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1222_length_12421_cov_10.218491 9711..9713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud197.t1.CDS1Gcaud197.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1222_length_12421_cov_10.218491 9711..10340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud197.t1.exon1Gcaud197.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1222_length_12421_cov_10.218491 9711..10340 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud197.t1.stop1Gcaud197.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1222_length_12421_cov_10.218491 10338..10340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud197.t1Gcaud197.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1222_length_12421_cov_10.218491 9711..10340 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud197.t1 ID=Gcaud197.t1|Name=Gcaud197.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
MKKPLTCSVSAWKESVKDILDITMTVNKIFPSLLNENTRRFALHASIELG
ENRRIHHHHVKSRAQTKIPSRSTITKRSWRRKKENREKEAARNSKKYCEA
RETETAEEKATRLAKRREQYAVQRMNAGSNAQEKSMVCLPNNSTLLSTFD
PATDIVEGTYRVKTTIDRFEIHKHEHDFYCDVSTGQSVYRVQDNGSLKKE
FQKEGNGNV*
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spliced messenger RNA

>Gcaud197.t1 ID=Gcaud197.t1|Name=Gcaud197.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_1222_length_12421_cov_10.218491:9711..10340+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAAGCCTCTTACCTGTTCAGTATCAGCATGGAAGGAAAGTGTCAA
AGACATTCTTGACATAACAATGACCGTCAACAAAATCTTCCCAAGTCTTC
TCAACGAAAACACAAGACGTTTTGCATTGCATGCAAGTATAGAACTTGGA
GAAAATCGACGTATACATCACCATCATGTCAAAAGCAGAGCCCAAACCAA
AATACCCAGCCGATCCACAATAACGAAGAGAAGTTGGAGGAGGAAAAAGG
AAAACAGGGAAAAGGAGGCGGCGAGAAATAGTAAGAAGTATTGCGAAGCA
CGAGAAACCGAAACCGCGGAAGAAAAAGCGACTCGTTTGGCGAAACGTCG
TGAGCAGTACGCCGTGCAAAGAATGAACGCAGGAAGTAATGCTCAAGAAA
AAAGTATGGTTTGTTTGCCTAATAACAGCACACTGCTTTCTACATTTGAT
CCGGCAACTGATATTGTGGAAGGAACTTATCGCGTTAAAACAACCATCGA
TAGGTTCGAGATTCACAAGCACGAGCACGATTTCTATTGCGACGTTAGTA
CGGGACAAAGTGTGTATCGCGTGCAGGACAATGGATCTCTGAAGAAAGAG
TTCCAGAAGGAAGGAAATGGAAATGTTTAG
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protein sequence of Gcaud197.t1

>Gcaud197.t1 ID=Gcaud197.t1|Name=Gcaud197.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MKKPLTCSVSAWKESVKDILDITMTVNKIFPSLLNENTRRFALHASIELG
ENRRIHHHHVKSRAQTKIPSRSTITKRSWRRKKENREKEAARNSKKYCEA
RETETAEEKATRLAKRREQYAVQRMNAGSNAQEKSMVCLPNNSTLLSTFD
PATDIVEGTYRVKTTIDRFEIHKHEHDFYCDVSTGQSVYRVQDNGSLKKE
FQKEGNGNV*
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mRNA from alignment at NODE_1222_length_12421_cov_10.218491:9711..10340+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud197.t1 ID=Gcaud197.t1|Name=Gcaud197.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_1222_length_12421_cov_10.218491:9711..10340+ (Gracilaria caudata M_176_S67 male)
ATGAAAAAGCCTCTTACCTGTTCAGTATCAGCATGGAAGGAAAGTGTCAA
AGACATTCTTGACATAACAATGACCGTCAACAAAATCTTCCCAAGTCTTC
TCAACGAAAACACAAGACGTTTTGCATTGCATGCAAGTATAGAACTTGGA
GAAAATCGACGTATACATCACCATCATGTCAAAAGCAGAGCCCAAACCAA
AATACCCAGCCGATCCACAATAACGAAGAGAAGTTGGAGGAGGAAAAAGG
AAAACAGGGAAAAGGAGGCGGCGAGAAATAGTAAGAAGTATTGCGAAGCA
CGAGAAACCGAAACCGCGGAAGAAAAAGCGACTCGTTTGGCGAAACGTCG
TGAGCAGTACGCCGTGCAAAGAATGAACGCAGGAAGTAATGCTCAAGAAA
AAAGTATGGTTTGTTTGCCTAATAACAGCACACTGCTTTCTACATTTGAT
CCGGCAACTGATATTGTGGAAGGAACTTATCGCGTTAAAACAACCATCGA
TAGGTTCGAGATTCACAAGCACGAGCACGATTTCTATTGCGACGTTAGTA
CGGGACAAAGTGTGTATCGCGTGCAGGACAATGGATCTCTGAAGAAAGAG
TTCCAGAAGGAAGGAAATGGAAATGTTTAG
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Coding sequence (CDS) from alignment at NODE_1222_length_12421_cov_10.218491:9711..10340+

>Gcaud197.t1 ID=Gcaud197.t1|Name=Gcaud197.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_1222_length_12421_cov_10.218491:9711..10340+ (Gracilaria caudata M_176_S67 male)
ATGAAAAAGCCTCTTACCTGTTCAGTATCAGCATGGAAGGAAAGTGTCAA
AGACATTCTTGACATAACAATGACCGTCAACAAAATCTTCCCAAGTCTTC
TCAACGAAAACACAAGACGTTTTGCATTGCATGCAAGTATAGAACTTGGA
GAAAATCGACGTATACATCACCATCATGTCAAAAGCAGAGCCCAAACCAA
AATACCCAGCCGATCCACAATAACGAAGAGAAGTTGGAGGAGGAAAAAGG
AAAACAGGGAAAAGGAGGCGGCGAGAAATAGTAAGAAGTATTGCGAAGCA
CGAGAAACCGAAACCGCGGAAGAAAAAGCGACTCGTTTGGCGAAACGTCG
TGAGCAGTACGCCGTGCAAAGAATGAACGCAGGAAGTAATGCTCAAGAAA
AAAGTATGGTTTGTTTGCCTAATAACAGCACACTGCTTTCTACATTTGAT
CCGGCAACTGATATTGTGGAAGGAACTTATCGCGTTAAAACAACCATCGA
TAGGTTCGAGATTCACAAGCACGAGCACGATTTCTATTGCGACGTTAGTA
CGGGACAAAGTGTGTATCGCGTGCAGGACAATGGATCTCTGAAGAAAGAG
TTCCAGAAGGAAGGAAATGGAAATGTTTAG
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