Gcaud130.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud130.t1
Unique Name	Gcaud130.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	177

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_9483_length_622_cov_4.039548	contig	NODE_9483_length_622_cov_4.039548:2..530 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1333998.M2A_2838
PFAMs	M20_dimer,Peptidase_M20
Max annot lvl	28211\|Alphaproteobacteria
Evalue	4.06e-18
EggNOG OGs	COG1473@1\|root,COG1473@2\|Bacteria,1MUIV@1224\|Proteobacteria,2TR5B@28211\|Alphaproteobacteria,4BP8H@82117\|unclassified Alphaproteobacteria
Description	COG1473 Metal-dependent amidase aminoacylase carboxypeptidase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud130	Gcaud130	Gracilaria caudata M_176_S67 male	gene	NODE_9483_length_622_cov_4.039548 2..530 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud130.t1.CDS1	Gcaud130.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_9483_length_622_cov_4.039548 2..530 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud130.t1.exon1	Gcaud130.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_9483_length_622_cov_4.039548 2..530 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud130.t1.start1	Gcaud130.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_9483_length_622_cov_4.039548 528..530 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud130.t1	Gcaud130.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_9483_length_622_cov_4.039548 2..530 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_9483_length_622_cov_4.039548:2..530-
coding sequence from alignment at NODE_9483_length_622_cov_4.039548:2..530-

mRNA sequence

>Gcaud130.t1 ID=Gcaud130.t1|Name=Gcaud130.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MDALPMTGQPDADAPLDTYATEECHMPGTAVAHKHVMKSSDQPGTESGNG
YYHACGHDGHTAMMLIAAHWIENNQQLVRRKVVIFFQPSEESRRKSDNRS
GAQVVVEDGLFDIHPDIHAVYAVHGGPGMPVGNFLISTSAIMAGSGRFSI
MIHGTGGHAANPGRAQTEPLLAASAIX

spliced messenger RNA

>Gcaud130.t1 ID=Gcaud130.t1|Name=Gcaud130.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=529bp|location=Sequence derived from alignment at NODE_9483_length_622_cov_4.039548:2..530- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCACTTCCCATGACAGGCCAACCGGACGCAGATGCACCCTTGGA
TACATATGCCACGGAAGAATGTCATATGCCCGGTACTGCCGTCGCTCACA
AGCACGTCATGAAATCTTCCGATCAACCTGGCACGGAGAGTGGGAACGGA
TATTATCATGCATGCGGTCATGATGGTCACACCGCCATGATGCTTATCGC
CGCCCACTGGATCGAGAATAATCAGCAACTGGTTCGCCGCAAGGTAGTTA
TCTTCTTCCAACCGTCCGAGGAGAGTCGTCGCAAAAGCGACAACCGCTCC
GGTGCGCAAGTTGTTGTTGAGGATGGCTTGTTTGATATTCATCCGGATAT
TCATGCTGTGTACGCCGTTCATGGTGGCCCGGGGATGCCAGTTGGAAACT
TTCTGATTAGCACATCTGCCATTATGGCTGGCTCTGGTCGTTTCTCGATT
ATGATCCATGGAACGGGAGGTCACGCCGCCAATCCGGGAAGGGCACAGAC
CGAACCTCTTCTCGCGGCGTCCGCCATTA

protein sequence of Gcaud130.t1

>Gcaud130.t1 ID=Gcaud130.t1|Name=Gcaud130.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MDALPMTGQPDADAPLDTYATEECHMPGTAVAHKHVMKSSDQPGTESGNG
YYHACGHDGHTAMMLIAAHWIENNQQLVRRKVVIFFQPSEESRRKSDNRS
GAQVVVEDGLFDIHPDIHAVYAVHGGPGMPVGNFLISTSAIMAGSGRFSI
MIHGTGGHAANPGRAQTEPLLAASAIX

mRNA from alignment at NODE_9483_length_622_cov_4.039548:2..530-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud130.t1 ID=Gcaud130.t1|Name=Gcaud130.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=529bp|location=Sequence derived from alignment at NODE_9483_length_622_cov_4.039548:2..530- (Gracilaria caudata M_176_S67 male)
ATGGATGCACTTCCCATGACAGGCCAACCGGACGCAGATGCACCCTTGGA
TACATATGCCACGGAAGAATGTCATATGCCCGGTACTGCCGTCGCTCACA
AGCACGTCATGAAATCTTCCGATCAACCTGGCACGGAGAGTGGGAACGGA
TATTATCATGCATGCGGTCATGATGGTCACACCGCCATGATGCTTATCGC
CGCCCACTGGATCGAGAATAATCAGCAACTGGTTCGCCGCAAGGTAGTTA
TCTTCTTCCAACCGTCCGAGGAGAGTCGTCGCAAAAGCGACAACCGCTCC
GGTGCGCAAGTTGTTGTTGAGGATGGCTTGTTTGATATTCATCCGGATAT
TCATGCTGTGTACGCCGTTCATGGTGGCCCGGGGATGCCAGTTGGAAACT
TTCTGATTAGCACATCTGCCATTATGGCTGGCTCTGGTCGTTTCTCGATT
ATGATCCATGGAACGGGAGGTCACGCCGCCAATCCGGGAAGGGCACAGAC
CGAACCTCTTCTCGCGGCGTCCGCCATTA

Coding sequence (CDS) from alignment at NODE_9483_length_622_cov_4.039548:2..530-

>Gcaud130.t1 ID=Gcaud130.t1|Name=Gcaud130.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=529bp|location=Sequence derived from alignment at NODE_9483_length_622_cov_4.039548:2..530- (Gracilaria caudata M_176_S67 male)
ATGGATGCACTTCCCATGACAGGCCAACCGGACGCAGATGCACCCTTGGA
TACATATGCCACGGAAGAATGTCATATGCCCGGTACTGCCGTCGCTCACA
AGCACGTCATGAAATCTTCCGATCAACCTGGCACGGAGAGTGGGAACGGA
TATTATCATGCATGCGGTCATGATGGTCACACCGCCATGATGCTTATCGC
CGCCCACTGGATCGAGAATAATCAGCAACTGGTTCGCCGCAAGGTAGTTA
TCTTCTTCCAACCGTCCGAGGAGAGTCGTCGCAAAAGCGACAACCGCTCC
GGTGCGCAAGTTGTTGTTGAGGATGGCTTGTTTGATATTCATCCGGATAT
TCATGCTGTGTACGCCGTTCATGGTGGCCCGGGGATGCCAGTTGGAAACT
TTCTGATTAGCACATCTGCCATTATGGCTGGCTCTGGTCGTTTCTCGATT
ATGATCCATGGAACGGGAGGTCACGCCGCCAATCCGGGAAGGGCACAGAC
CGAACCTCTTCTCGCGGCGTCCGCCATTA