Gcaud2923.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2923.t1
Unique NameGcaud2923.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:9321..9959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2923Gcaud2923Gracilaria caudata M_176_S67 malegeneNODE_92_length_53089_cov_4.692668 9321..9959 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2923.t1.start1Gcaud2923.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_92_length_53089_cov_4.692668 9321..9323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2923.t1.CDS1Gcaud2923.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 9321..9959 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2923.t1.exon1Gcaud2923.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 9321..9959 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2923.t1.stop1Gcaud2923.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_92_length_53089_cov_4.692668 9957..9959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2923.t1Gcaud2923.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_92_length_53089_cov_4.692668 9321..9959 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2923.t1 ID=Gcaud2923.t1|Name=Gcaud2923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=213bp
MDSEELKNIDQAVEPIHRTVLEFADAVAEEYIVYPTERMREKKAREAIQT
FRNSCTDALEAITKWEDKERANLVKKAVQVVKRENENDIMLYEKALTKFY
ERKKQYEKCSTLTRNILSPRSKSREKVWDEEDVATYPEMNCMMLCFILFG
LLLVGWMLTHFGVGEVEDMRRRYVSHRRVAPATDRCDVLGLCNLPTVVKN
AVSVEDFDKMEL*
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spliced messenger RNA

>Gcaud2923.t1 ID=Gcaud2923.t1|Name=Gcaud2923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=639bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:9321..9959+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCGAAGAGCTTAAGAATATTGATCAGGCTGTGGAGCCCATTCA
TCGCACAGTTCTCGAGTTTGCGGATGCAGTCGCAGAAGAATACATCGTGT
ATCCCACAGAAAGGATGAGGGAAAAAAAGGCCCGGGAAGCTATTCAAACT
TTCAGAAACTCATGTACTGATGCTCTGGAGGCCATTACAAAATGGGAGGA
CAAGGAACGTGCGAATCTTGTGAAGAAGGCTGTACAAGTTGTCAAACGAG
AGAACGAAAATGATATTATGTTGTATGAAAAGGCGTTGACCAAGTTTTAT
GAGCGGAAGAAGCAGTATGAGAAATGCAGTACATTGACGAGGAATATACT
CTCTCCTCGATCCAAGTCCAGAGAAAAAGTGTGGGACGAGGAAGATGTGG
CCACTTATCCTGAGATGAATTGTATGATGTTGTGTTTCATTCTTTTTGGT
CTTCTCTTGGTCGGATGGATGCTCACCCACTTCGGAGTGGGTGAAGTGGA
GGATATGAGGAGACGATATGTGTCGCATAGGAGGGTTGCGCCCGCAACTG
ATAGGTGTGATGTTCTGGGTCTTTGTAACCTTCCTACTGTTGTCAAGAAC
GCCGTTTCTGTCGAGGACTTTGACAAGATGGAACTATAG
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protein sequence of Gcaud2923.t1

>Gcaud2923.t1 ID=Gcaud2923.t1|Name=Gcaud2923.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=213bp
MDSEELKNIDQAVEPIHRTVLEFADAVAEEYIVYPTERMREKKAREAIQT
FRNSCTDALEAITKWEDKERANLVKKAVQVVKRENENDIMLYEKALTKFY
ERKKQYEKCSTLTRNILSPRSKSREKVWDEEDVATYPEMNCMMLCFILFG
LLLVGWMLTHFGVGEVEDMRRRYVSHRRVAPATDRCDVLGLCNLPTVVKN
AVSVEDFDKMEL*
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mRNA from alignment at NODE_92_length_53089_cov_4.692668:9321..9959+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2923.t1 ID=Gcaud2923.t1|Name=Gcaud2923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=639bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:9321..9959+ (Gracilaria caudata M_176_S67 male)
ATGGACAGCGAAGAGCTTAAGAATATTGATCAGGCTGTGGAGCCCATTCA
TCGCACAGTTCTCGAGTTTGCGGATGCAGTCGCAGAAGAATACATCGTGT
ATCCCACAGAAAGGATGAGGGAAAAAAAGGCCCGGGAAGCTATTCAAACT
TTCAGAAACTCATGTACTGATGCTCTGGAGGCCATTACAAAATGGGAGGA
CAAGGAACGTGCGAATCTTGTGAAGAAGGCTGTACAAGTTGTCAAACGAG
AGAACGAAAATGATATTATGTTGTATGAAAAGGCGTTGACCAAGTTTTAT
GAGCGGAAGAAGCAGTATGAGAAATGCAGTACATTGACGAGGAATATACT
CTCTCCTCGATCCAAGTCCAGAGAAAAAGTGTGGGACGAGGAAGATGTGG
CCACTTATCCTGAGATGAATTGTATGATGTTGTGTTTCATTCTTTTTGGT
CTTCTCTTGGTCGGATGGATGCTCACCCACTTCGGAGTGGGTGAAGTGGA
GGATATGAGGAGACGATATGTGTCGCATAGGAGGGTTGCGCCCGCAACTG
ATAGGTGTGATGTTCTGGGTCTTTGTAACCTTCCTACTGTTGTCAAGAAC
GCCGTTTCTGTCGAGGACTTTGACAAGATGGAACTATAG
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Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:9321..9959+

>Gcaud2923.t1 ID=Gcaud2923.t1|Name=Gcaud2923.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=639bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:9321..9959+ (Gracilaria caudata M_176_S67 male)
ATGGACAGCGAAGAGCTTAAGAATATTGATCAGGCTGTGGAGCCCATTCA
TCGCACAGTTCTCGAGTTTGCGGATGCAGTCGCAGAAGAATACATCGTGT
ATCCCACAGAAAGGATGAGGGAAAAAAAGGCCCGGGAAGCTATTCAAACT
TTCAGAAACTCATGTACTGATGCTCTGGAGGCCATTACAAAATGGGAGGA
CAAGGAACGTGCGAATCTTGTGAAGAAGGCTGTACAAGTTGTCAAACGAG
AGAACGAAAATGATATTATGTTGTATGAAAAGGCGTTGACCAAGTTTTAT
GAGCGGAAGAAGCAGTATGAGAAATGCAGTACATTGACGAGGAATATACT
CTCTCCTCGATCCAAGTCCAGAGAAAAAGTGTGGGACGAGGAAGATGTGG
CCACTTATCCTGAGATGAATTGTATGATGTTGTGTTTCATTCTTTTTGGT
CTTCTCTTGGTCGGATGGATGCTCACCCACTTCGGAGTGGGTGAAGTGGA
GGATATGAGGAGACGATATGTGTCGCATAGGAGGGTTGCGCCCGCAACTG
ATAGGTGTGATGTTCTGGGTCTTTGTAACCTTCCTACTGTTGTCAAGAAC
GCCGTTTCTGTCGAGGACTTTGACAAGATGGAACTATAG
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