Gcaud2930.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2930.t1
Unique Name	Gcaud2930.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_92_length_53089_cov_4.692668	contig	NODE_92_length_53089_cov_4.692668:35218..36219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2930	Gcaud2930	Gracilaria caudata M_176_S67 male	gene	NODE_92_length_53089_cov_4.692668 35218..36219 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2930.t1.start1	Gcaud2930.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_92_length_53089_cov_4.692668 35218..35220 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2930.t1.CDS1	Gcaud2930.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_92_length_53089_cov_4.692668 35218..36219 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2930.t1.exon1	Gcaud2930.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_92_length_53089_cov_4.692668 35218..36219 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2930.t1.stop1	Gcaud2930.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_92_length_53089_cov_4.692668 36217..36219 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2930.t1	Gcaud2930.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_92_length_53089_cov_4.692668 35218..36219 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+
coding sequence from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+

mRNA sequence

>Gcaud2930.t1 ID=Gcaud2930.t1|Name=Gcaud2930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=334bp
MFPLFNRFHAVQTADTPTRQLFARLSEQRLDVILAEKAYVATVSHNALPK
ACVRGSFSGLSTSLLSLVLSTPTTTAAIIQNPDALVLTCVDKSSVQLEIT
VPVQLTPSADLLDELHHSLITAVASLEACLLGEHEHTDPTHDIHGLQAMH
AIPMHDKEPVNGVLSFRRMCAASMSLLAARAFATAQLASKCRAERLQQKQ
AIIEQMKQSKKRERERAEQARSRKVQKKRERSVFVEYKPAHDIEQETDKQ
GANHSQVHVSENKQIGKHNEPEQQAKATEILRTYSEKSPSLKEGREPNQG
QKHVAGSTAANRTTEPSSSIPKRKKRKKTMKLV*

spliced messenger RNA

>Gcaud2930.t1 ID=Gcaud2930.t1|Name=Gcaud2930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCATTATTCAACCGCTTCCACGCCGTTCAAACCGCGGATACCCC
GACGCGCCAACTGTTTGCCCGCCTCTCTGAACAGCGCCTCGACGTGATTC
TCGCCGAAAAGGCATACGTAGCTACCGTGAGCCATAACGCGCTCCCCAAG
GCTTGCGTAAGAGGATCGTTCAGCGGACTATCGACAAGCCTCTTGTCACT
TGTGCTTTCCACGCCCACAACCACCGCTGCTATAATCCAGAACCCCGATG
CGCTGGTTCTCACGTGTGTTGATAAATCGTCAGTGCAGCTTGAGATCACA
GTGCCCGTGCAGCTCACGCCTAGCGCAGACCTTCTTGACGAGCTTCATCA
TTCTCTCATAACGGCTGTGGCTTCGTTAGAAGCTTGTTTGCTCGGAGAAC
ATGAGCACACTGATCCAACGCACGATATTCATGGCTTGCAAGCTATGCAT
GCCATCCCCATGCATGACAAAGAGCCTGTCAATGGTGTTTTATCATTCCG
TCGTATGTGCGCCGCAAGCATGAGTTTGTTAGCCGCGCGGGCCTTTGCAA
CCGCGCAGCTTGCGTCAAAATGTCGGGCAGAACGATTGCAGCAGAAACAA
GCGATAATTGAACAAATGAAGCAATCGAAAAAACGTGAACGTGAGCGGGC
GGAACAGGCTAGAAGTCGTAAGGTGCAGAAGAAGAGAGAACGGAGCGTCT
TTGTCGAATATAAACCCGCGCACGATATTGAACAGGAAACAGACAAACAG
GGTGCAAACCATTCTCAAGTTCACGTCAGTGAAAACAAACAGATAGGTAA
ACATAATGAACCCGAACAACAAGCAAAAGCAACTGAGATTTTGCGAACCT
ACTCTGAAAAGAGCCCGTCGTTGAAGGAAGGGCGTGAACCGAATCAAGGA
CAAAAGCATGTGGCCGGGAGTACGGCAGCAAACCGGACAACCGAACCGTC
ATCATCGATCCCAAAACGCAAAAAGCGCAAGAAGACCATGAAACTCGTCT
AG

protein sequence of Gcaud2930.t1

>Gcaud2930.t1 ID=Gcaud2930.t1|Name=Gcaud2930.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MFPLFNRFHAVQTADTPTRQLFARLSEQRLDVILAEKAYVATVSHNALPK
ACVRGSFSGLSTSLLSLVLSTPTTTAAIIQNPDALVLTCVDKSSVQLEIT
VPVQLTPSADLLDELHHSLITAVASLEACLLGEHEHTDPTHDIHGLQAMH
AIPMHDKEPVNGVLSFRRMCAASMSLLAARAFATAQLASKCRAERLQQKQ
AIIEQMKQSKKRERERAEQARSRKVQKKRERSVFVEYKPAHDIEQETDKQ
GANHSQVHVSENKQIGKHNEPEQQAKATEILRTYSEKSPSLKEGREPNQG
QKHVAGSTAANRTTEPSSSIPKRKKRKKTMKLV*

mRNA from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2930.t1 ID=Gcaud2930.t1|Name=Gcaud2930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+ (Gracilaria caudata M_176_S67 male)
ATGTTTCCATTATTCAACCGCTTCCACGCCGTTCAAACCGCGGATACCCC
GACGCGCCAACTGTTTGCCCGCCTCTCTGAACAGCGCCTCGACGTGATTC
TCGCCGAAAAGGCATACGTAGCTACCGTGAGCCATAACGCGCTCCCCAAG
GCTTGCGTAAGAGGATCGTTCAGCGGACTATCGACAAGCCTCTTGTCACT
TGTGCTTTCCACGCCCACAACCACCGCTGCTATAATCCAGAACCCCGATG
CGCTGGTTCTCACGTGTGTTGATAAATCGTCAGTGCAGCTTGAGATCACA
GTGCCCGTGCAGCTCACGCCTAGCGCAGACCTTCTTGACGAGCTTCATCA
TTCTCTCATAACGGCTGTGGCTTCGTTAGAAGCTTGTTTGCTCGGAGAAC
ATGAGCACACTGATCCAACGCACGATATTCATGGCTTGCAAGCTATGCAT
GCCATCCCCATGCATGACAAAGAGCCTGTCAATGGTGTTTTATCATTCCG
TCGTATGTGCGCCGCAAGCATGAGTTTGTTAGCCGCGCGGGCCTTTGCAA
CCGCGCAGCTTGCGTCAAAATGTCGGGCAGAACGATTGCAGCAGAAACAA
GCGATAATTGAACAAATGAAGCAATCGAAAAAACGTGAACGTGAGCGGGC
GGAACAGGCTAGAAGTCGTAAGGTGCAGAAGAAGAGAGAACGGAGCGTCT
TTGTCGAATATAAACCCGCGCACGATATTGAACAGGAAACAGACAAACAG
GGTGCAAACCATTCTCAAGTTCACGTCAGTGAAAACAAACAGATAGGTAA
ACATAATGAACCCGAACAACAAGCAAAAGCAACTGAGATTTTGCGAACCT
ACTCTGAAAAGAGCCCGTCGTTGAAGGAAGGGCGTGAACCGAATCAAGGA
CAAAAGCATGTGGCCGGGAGTACGGCAGCAAACCGGACAACCGAACCGTC
ATCATCGATCCCAAAACGCAAAAAGCGCAAGAAGACCATGAAACTCGTCT
AG

Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+

>Gcaud2930.t1 ID=Gcaud2930.t1|Name=Gcaud2930.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1002bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:35218..36219+ (Gracilaria caudata M_176_S67 male)
ATGTTTCCATTATTCAACCGCTTCCACGCCGTTCAAACCGCGGATACCCC
GACGCGCCAACTGTTTGCCCGCCTCTCTGAACAGCGCCTCGACGTGATTC
TCGCCGAAAAGGCATACGTAGCTACCGTGAGCCATAACGCGCTCCCCAAG
GCTTGCGTAAGAGGATCGTTCAGCGGACTATCGACAAGCCTCTTGTCACT
TGTGCTTTCCACGCCCACAACCACCGCTGCTATAATCCAGAACCCCGATG
CGCTGGTTCTCACGTGTGTTGATAAATCGTCAGTGCAGCTTGAGATCACA
GTGCCCGTGCAGCTCACGCCTAGCGCAGACCTTCTTGACGAGCTTCATCA
TTCTCTCATAACGGCTGTGGCTTCGTTAGAAGCTTGTTTGCTCGGAGAAC
ATGAGCACACTGATCCAACGCACGATATTCATGGCTTGCAAGCTATGCAT
GCCATCCCCATGCATGACAAAGAGCCTGTCAATGGTGTTTTATCATTCCG
TCGTATGTGCGCCGCAAGCATGAGTTTGTTAGCCGCGCGGGCCTTTGCAA
CCGCGCAGCTTGCGTCAAAATGTCGGGCAGAACGATTGCAGCAGAAACAA
GCGATAATTGAACAAATGAAGCAATCGAAAAAACGTGAACGTGAGCGGGC
GGAACAGGCTAGAAGTCGTAAGGTGCAGAAGAAGAGAGAACGGAGCGTCT
TTGTCGAATATAAACCCGCGCACGATATTGAACAGGAAACAGACAAACAG
GGTGCAAACCATTCTCAAGTTCACGTCAGTGAAAACAAACAGATAGGTAA
ACATAATGAACCCGAACAACAAGCAAAAGCAACTGAGATTTTGCGAACCT
ACTCTGAAAAGAGCCCGTCGTTGAAGGAAGGGCGTGAACCGAATCAAGGA
CAAAAGCATGTGGCCGGGAGTACGGCAGCAAACCGGACAACCGAACCGTC
ATCATCGATCCCAAAACGCAAAAAGCGCAAGAAGACCATGAAACTCGTCT
AG