Gcaud2929.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2929.t1
Unique NameGcaud2929.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length149
Homology
BLAST of Gcaud2929.t1 vs. uniprot
Match: A0A2V3IHA4_9FLOR (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHA4_9FLOR)

HSP 1 Score: 278 bits (710), Expect = 5.390e-93
Identity = 126/148 (85.14%), Postives = 136/148 (91.89%), Query Frame = 0
Query:    1 MFDERADWEPFDPAHSPVPARRRLATRPYRPQGRRAVSRLTDFLGFRISRRRAPIARDDDDSLGLTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL 148
            MFDERADWE FDPA SP+PARRRLATRP+RP  RR V+R+TDFL FRISRRRAP+ RDDDDSLGLTYEELLELDDGNVRCGLSK ELDDLTT +ATKEHMN DCHICL+ F+YGV LV+L+CDHVYHKHCIHTWLKQKRSCPICRCDL
Sbjct:   91 MFDERADWEAFDPAQSPIPARRRLATRPFRPHSRRRVARITDFLAFRISRRRAPVVRDDDDSLGLTYEELLELDDGNVRCGLSKDELDDLTTFDATKEHMNQDCHICLDGFDYGVSLVMLACDHVYHKHCIHTWLKQKRSCPICRCDL 238          
BLAST of Gcaud2929.t1 vs. uniprot
Match: R7QF15_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF15_CHOCR)

HSP 1 Score: 131 bits (329), Expect = 7.520e-37
Identity = 61/99 (61.62%), Postives = 68/99 (68.69%), Query Frame = 0
Query:   50 RRRAPIARDDDDSLGLTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL 148
            R R     DD++SLGLTYEEL+EL++ NV CGLSK EL  L   EA KEHMN  CHICLE  EY   LV L C H YHK CIH WL +KRSCP CR +L
Sbjct:   11 RHRVRDEMDDNESLGLTYEELIELEERNVMCGLSKAELVGLGHFEAGKEHMNQTCHICLEGVEYAAVLVQLKCSHAYHKECIHKWLSRKRSCPTCRSEL 109          
BLAST of Gcaud2929.t1 vs. uniprot
Match: R0GCX8_9BRAS (RING-type domain-containing protein n=3 Tax=Capsella rubella TaxID=81985 RepID=R0GCX8_9BRAS)

HSP 1 Score: 71.2 bits (173), Expect = 4.420e-12
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   56 ARDDDDSLGLTYEELLELDD--GNVRCGLSKHELDDLTTLE---ATKEHM----------NMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL 148
            A +D D   +TYEE+ EL++  G V  GLS+ ++  L T +    TK             +  C ICL  +E G  +++L C+H+YHK CI  WLKQ + C +C+ ++
Sbjct:  146 ANEDIDPANMTYEEINELEEAIGEVSKGLSQEKISRLKTHKYGTKTKTRCWLRKKKFVADDSQCSICLVDYENGDKIMVLPCNHIYHKDCISQWLKQNKVCCVCKAEV 253          
BLAST of Gcaud2929.t1 vs. uniprot
Match: UPI001F072816 (E3 ubiquitin-protein ligase RLIM isoform X1 n=2 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F072816)

HSP 1 Score: 72.4 bits (176), Expect = 5.380e-12
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   49 SRRRAPIARDDDDSLG---LTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICR 145
            +R RAPI+ ++  SL    L +  LL  DD +   GL+K ++D+L+T    +      C +C+  +  G  L  L C H YH HCI  WL +  +CPICR
Sbjct:  695 ARPRAPISLEEPSSLPFLRLAHFFLLNDDDEDQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 794          
BLAST of Gcaud2929.t1 vs. uniprot
Match: A0A7S2HVB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HVB2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.180e-12
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0
Query:   93 LEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL 148
            LE   EH   DC IC+  F  G  +V   C+HV+HK C   WL+Q R+CP+CR D+
Sbjct:   36 LEEFPEHYPKDCCICMGDFVAGEVIVATECEHVFHKRCFREWLRQARTCPVCRTDI 91          
BLAST of Gcaud2929.t1 vs. uniprot
Match: UPI001C3E2B53 (E3 ubiquitin-protein ligase RNF12-A-like n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=UPI001C3E2B53)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-11
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:   49 SRRRAPIARDDDDSLG---LTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICR 145
            +R RAPI+ ++  SL    L +  LL  DD     GL+K ++D+L+T    +      C +C+  +  G  L  L C H YH HCI  WL +  +CPICR
Sbjct:  835 ARPRAPISLEEPGSLPFLRLAHFFLLNDDDEEQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEYAEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 934          
BLAST of Gcaud2929.t1 vs. uniprot
Match: A0A8C3ZSR3_9TELE (Ring finger protein, LIM domain interacting n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZSR3_9TELE)

HSP 1 Score: 71.2 bits (173), Expect = 1.320e-11
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 0
Query:   50 RRRAPIARDDDDSLG---LTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICR 145
            R RAPI  ++  SL    L +  LL  DD     GL+K ++D+L+T    +      C +C+  +  G  L  L C H YH HCI  WL +  +CPICR
Sbjct:  524 RPRAPITLEETGSLPFLRLAHFFLLSDDDDEQPRGLTKEQIDNLSTRNFGESDALKTCSVCIMEYAQGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 622          
BLAST of Gcaud2929.t1 vs. uniprot
Match: A0A7S0BI50_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BI50_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 1.420e-11
Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   65 LTYEELLELDD--GNVRCGLSKHELDDLTTLEA-TKEHMNMD----CHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL 148
            LTYEE+L L++  G V  GL++ ELD + T +  T +   +D    C +CLE       +  L CDH++H  C+  WL++ ++CP+C+ ++
Sbjct:    1 LTYEEMLALEEHMGKVIKGLTEEELDSIPTEKVCTHDQERLDEEKACSVCLEDLLEDEVVRRLRCDHIFHIPCVDNWLRENKTCPVCKVEV 91          
BLAST of Gcaud2929.t1 vs. uniprot
Match: A0A6P8H5L1_CLUHA (E3 ubiquitin-protein ligase RNF12-A isoform X1 n=3 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8H5L1_CLUHA)

HSP 1 Score: 70.5 bits (171), Expect = 2.510e-11
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 0
Query:   50 RRRAPIARDDDDSLG---LTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICR 145
            R RAPI+ ++  SL    L +  LL  +D     GL+K ++D+L+T    +      C +C+  +  G  L  L C H YH HCI  WL +  +CPICR
Sbjct:  671 RARAPISLEETGSLPFLRLAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEYAQGHKLRKLPCSHEYHVHCIDRWLSENSTCPICR 769          
BLAST of Gcaud2929.t1 vs. uniprot
Match: A0A6I9N0Z1_9TELE (RING finger protein 148-like n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9N0Z1_9TELE)

HSP 1 Score: 70.1 bits (170), Expect = 2.570e-11
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   94 EATKEHMNMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL 148
            E T    NM C +CLE ++ G  + +L+CDH++HK CI  WL ++R+CP+C+CD+
Sbjct:  242 EETNSESNM-CAVCLESYKAGEVVTVLTCDHIFHKPCIEPWLLERRTCPMCKCDI 295          
The following BLAST results are available for this feature:
BLAST of Gcaud2929.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHA4_9FLOR5.390e-9385.14E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
R7QF15_CHOCR7.520e-3761.62RING-type domain-containing protein n=1 Tax=Chondr... [more]
R0GCX8_9BRAS4.420e-1235.19RING-type domain-containing protein n=3 Tax=Capsel... [more]
UPI001F0728165.380e-1237.00E3 ubiquitin-protein ligase RLIM isoform X1 n=2 Ta... [more]
A0A7S2HVB2_9STRA9.180e-1246.43Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
UPI001C3E2B531.020e-1137.00E3 ubiquitin-protein ligase RNF12-A-like n=1 Tax=O... [more]
A0A8C3ZSR3_9TELE1.320e-1137.37Ring finger protein, LIM domain interacting n=2 Ta... [more]
A0A7S0BI50_9RHOD1.420e-1135.16Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A6P8H5L1_CLUHA2.510e-1136.36E3 ubiquitin-protein ligase RNF12-A isoform X1 n=3... [more]
A0A6I9N0Z1_9TELE2.570e-1145.45RING finger protein 148-like n=4 Tax=Notothenioide... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 104..144
e-value: 1.0E-6
score: 38.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 103..145
e-value: 1.0E-12
score: 48.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 104..145
score: 13.079398
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 73..148
e-value: 4.2E-18
score: 66.8
NoneNo IPR availablePANTHERPTHR22937:SF65E3 UBIQUITIN-PROTEIN LIGASE RNF165coord: 66..145
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 103..148
IPR045191E3 ubiquitin-protein ligase MBR1/2-likePANTHERPTHR22937E3 UBIQUITIN-PROTEIN LIGASE RNF165coord: 66..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:29261..29707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2929.t1Gcaud2929.t1Gracilaria caudata M_176_S67 malemRNANODE_92_length_53089_cov_4.692668 29261..29707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2929.t1 ID=Gcaud2929.t1|Name=Gcaud2929.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=149bp
MFDERADWEPFDPAHSPVPARRRLATRPYRPQGRRAVSRLTDFLGFRISR
RRAPIARDDDDSLGLTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHM
NMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR045191MBR1/2-like