Gcaud2929.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2929.t1
Unique NameGcaud2929.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_92_length_53089_cov_4.692668contigNODE_92_length_53089_cov_4.692668:29261..29707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007146185.1
PFAMszf-RING_2,zinc_ribbon_9
Max annot lvl35493|Streptophyta
KEGG koko:K11982
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue3.43e-15
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37JFY@33090|Viridiplantae,3GGXW@35493|Streptophyta
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2929Gcaud2929Gracilaria caudata M_176_S67 malegeneNODE_92_length_53089_cov_4.692668 29261..29707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2929.t1.stop1Gcaud2929.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_92_length_53089_cov_4.692668 29261..29263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2929.t1.CDS1Gcaud2929.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_92_length_53089_cov_4.692668 29261..29707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2929.t1.exon1Gcaud2929.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_92_length_53089_cov_4.692668 29261..29707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2929.t1.start1Gcaud2929.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_92_length_53089_cov_4.692668 29705..29707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2929.t1Gcaud2929.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_92_length_53089_cov_4.692668 29261..29707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2929.t1 ID=Gcaud2929.t1|Name=Gcaud2929.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=149bp
MFDERADWEPFDPAHSPVPARRRLATRPYRPQGRRAVSRLTDFLGFRISR
RRAPIARDDDDSLGLTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHM
NMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL*
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spliced messenger RNA

>Gcaud2929.t1 ID=Gcaud2929.t1|Name=Gcaud2929.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:29261..29707- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGATGAGCGTGCTGATTGGGAGCCGTTTGACCCGGCGCACTCGCC
TGTGCCGGCTAGACGGCGTCTGGCCACGCGACCATACCGCCCGCAGGGTA
GACGCGCCGTGTCTAGACTCACCGACTTTTTGGGCTTTCGTATCTCGCGT
AGACGTGCGCCCATTGCTAGGGATGACGATGACTCGCTGGGACTCACGTA
CGAGGAGTTGTTAGAACTGGACGATGGTAATGTGCGATGCGGACTGTCCA
AACATGAGTTGGATGATCTCACTACCCTTGAGGCTACCAAGGAGCATATG
AACATGGACTGTCATATCTGTTTGGAGCGTTTTGAATATGGCGTCCCGCT
CGTGTTGCTTTCGTGTGATCACGTTTACCACAAGCATTGTATACACACAT
GGCTCAAACAGAAGCGCTCGTGCCCCATTTGCCGTTGCGATCTTTAA
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protein sequence of Gcaud2929.t1

>Gcaud2929.t1 ID=Gcaud2929.t1|Name=Gcaud2929.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=149bp
MFDERADWEPFDPAHSPVPARRRLATRPYRPQGRRAVSRLTDFLGFRISR
RRAPIARDDDDSLGLTYEELLELDDGNVRCGLSKHELDDLTTLEATKEHM
NMDCHICLERFEYGVPLVLLSCDHVYHKHCIHTWLKQKRSCPICRCDL*
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mRNA from alignment at NODE_92_length_53089_cov_4.692668:29261..29707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2929.t1 ID=Gcaud2929.t1|Name=Gcaud2929.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:29261..29707- (Gracilaria caudata M_176_S67 male)
ATGTTTGATGAGCGTGCTGATTGGGAGCCGTTTGACCCGGCGCACTCGCC
TGTGCCGGCTAGACGGCGTCTGGCCACGCGACCATACCGCCCGCAGGGTA
GACGCGCCGTGTCTAGACTCACCGACTTTTTGGGCTTTCGTATCTCGCGT
AGACGTGCGCCCATTGCTAGGGATGACGATGACTCGCTGGGACTCACGTA
CGAGGAGTTGTTAGAACTGGACGATGGTAATGTGCGATGCGGACTGTCCA
AACATGAGTTGGATGATCTCACTACCCTTGAGGCTACCAAGGAGCATATG
AACATGGACTGTCATATCTGTTTGGAGCGTTTTGAATATGGCGTCCCGCT
CGTGTTGCTTTCGTGTGATCACGTTTACCACAAGCATTGTATACACACAT
GGCTCAAACAGAAGCGCTCGTGCCCCATTTGCCGTTGCGATCTTTAA
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Coding sequence (CDS) from alignment at NODE_92_length_53089_cov_4.692668:29261..29707-

>Gcaud2929.t1 ID=Gcaud2929.t1|Name=Gcaud2929.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=447bp|location=Sequence derived from alignment at NODE_92_length_53089_cov_4.692668:29261..29707- (Gracilaria caudata M_176_S67 male)
ATGTTTGATGAGCGTGCTGATTGGGAGCCGTTTGACCCGGCGCACTCGCC
TGTGCCGGCTAGACGGCGTCTGGCCACGCGACCATACCGCCCGCAGGGTA
GACGCGCCGTGTCTAGACTCACCGACTTTTTGGGCTTTCGTATCTCGCGT
AGACGTGCGCCCATTGCTAGGGATGACGATGACTCGCTGGGACTCACGTA
CGAGGAGTTGTTAGAACTGGACGATGGTAATGTGCGATGCGGACTGTCCA
AACATGAGTTGGATGATCTCACTACCCTTGAGGCTACCAAGGAGCATATG
AACATGGACTGTCATATCTGTTTGGAGCGTTTTGAATATGGCGTCCCGCT
CGTGTTGCTTTCGTGTGATCACGTTTACCACAAGCATTGTATACACACAT
GGCTCAAACAGAAGCGCTCGTGCCCCATTTGCCGTTGCGATCTTTAA
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