Gcaud1911.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1911.t1
Unique NameGcaud1911.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_927_length_16063_cov_4.587278contigNODE_927_length_16063_cov_4.587278:7777..8849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog197221.22295708
PFAMsDUF915,PGAP1
Max annot lvl1117|Cyanobacteria
Evalue6.29e-65
EggNOG OGsCOG1075@1|root,COG1075@2|Bacteria,1FZWY@1117|Cyanobacteria
Descriptionwith the alpha beta hydrolase fold
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1911Gcaud1911Gracilaria caudata M_176_S67 malegeneNODE_927_length_16063_cov_4.587278 7777..8849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1911.t1Gcaud1911.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_927_length_16063_cov_4.587278 7777..8849 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1911.t1.stop1Gcaud1911.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_927_length_16063_cov_4.587278 7777..7779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1911.t1.CDS1Gcaud1911.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_927_length_16063_cov_4.587278 7777..7931 -
Gcaud1911.t1.CDS2Gcaud1911.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_927_length_16063_cov_4.587278 8030..8849 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1911.t1.exon1Gcaud1911.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_927_length_16063_cov_4.587278 7777..7931 -
Gcaud1911.t1.exon2Gcaud1911.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_927_length_16063_cov_4.587278 8030..8849 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1911.t1.intron1Gcaud1911.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_927_length_16063_cov_4.587278 7932..8029 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1911.t1.start1Gcaud1911.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_927_length_16063_cov_4.587278 8847..8849 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1911.t1 ID=Gcaud1911.t1|Name=Gcaud1911.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=325bp
MIRITPLCFATKPSLSLKFFPAERSLARHRKRPPYHAVSVRSRATLSPTL
CETVASKYRKVDVFNQQLQPCIQSDQKALNPVIIIPGYGATAKEYYPMAD
VLRETLGPDAYVRVVPVKLSTWLSTVGGRPITPVLRLLDDTVQKAIELSG
SSQVHLVAHSAGGWIARIYLGETPYPSGSSCVWNGGRFVSKLVCLGTPHR
SDEGVTRKNMQFVNENYPGAYHGHVHYVNIVGSGGSIAEQRNGAWRFWES
DWFTRVSYCLTDKSIGCEAAEGDGIVPLSSAFLPGAQNICLKGIWHSPSS
RGVWYGHPDAINYWSSFLQTKENV*
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spliced messenger RNA

>Gcaud1911.t1 ID=Gcaud1911.t1|Name=Gcaud1911.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:7777..8849- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAGAATCACACCATTGTGCTTTGCAACTAAGCCTTCTCTCAGCTT
AAAATTCTTCCCGGCCGAGAGGAGCCTTGCTCGTCACCGCAAACGACCGC
CGTATCATGCGGTATCTGTCCGTTCACGGGCAACATTATCGCCGACGCTG
TGTGAGACCGTGGCGTCAAAATATCGGAAAGTAGATGTCTTCAACCAACA
ACTACAGCCATGTATCCAAAGCGATCAAAAGGCATTGAATCCGGTCATCA
TAATCCCCGGGTATGGTGCCACTGCCAAAGAATATTATCCCATGGCAGAT
GTTCTCCGCGAAACCCTTGGCCCTGATGCATATGTGAGAGTGGTTCCGGT
CAAGCTTTCAACCTGGTTATCCACCGTTGGCGGTCGGCCTATCACTCCCG
TTCTGCGCTTATTGGACGACACCGTACAGAAAGCAATAGAACTATCTGGG
TCATCACAAGTTCACTTGGTTGCCCACTCGGCCGGCGGCTGGATTGCCCG
CATCTATCTCGGCGAAACTCCGTATCCATCTGGCTCATCGTGCGTGTGGA
ATGGTGGCCGGTTTGTGTCGAAGTTGGTGTGCCTCGGCACTCCACATCGT
AGTGATGAAGGGGTTACCAGGAAAAATATGCAGTTTGTTAACGAAAACTA
TCCTGGGGCGTACCATGGCCATGTGCATTATGTAAACATAGTCGGCAGCG
GTGGTTCGATCGCTGAACAACGCAATGGCGCGTGGCGATTTTGGGAATCG
GATTGGTTCACAAGAGTGAGCTATTGCCTGACTGATAAGTCAATAGGATG
CGAAGCGGCTGAAGGCGATGGTATTGTACCACTTTCTTCAGCATTTTTGC
CTGGCGCACAAAATATATGCCTGAAAGGAATCTGGCATTCCCCCTCCTCT
AGAGGGGTTTGGTATGGCCATCCGGATGCAATTAACTACTGGAGCTCCTT
CCTTCAGACAAAGGAAAATGTGTAA
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protein sequence of Gcaud1911.t1

>Gcaud1911.t1 ID=Gcaud1911.t1|Name=Gcaud1911.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=325bp
MIRITPLCFATKPSLSLKFFPAERSLARHRKRPPYHAVSVRSRATLSPTL
CETVASKYRKVDVFNQQLQPCIQSDQKALNPVIIIPGYGATAKEYYPMAD
VLRETLGPDAYVRVVPVKLSTWLSTVGGRPITPVLRLLDDTVQKAIELSG
SSQVHLVAHSAGGWIARIYLGETPYPSGSSCVWNGGRFVSKLVCLGTPHR
SDEGVTRKNMQFVNENYPGAYHGHVHYVNIVGSGGSIAEQRNGAWRFWES
DWFTRVSYCLTDKSIGCEAAEGDGIVPLSSAFLPGAQNICLKGIWHSPSS
RGVWYGHPDAINYWSSFLQTKENV*
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mRNA from alignment at NODE_927_length_16063_cov_4.587278:7777..8849-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1911.t1 ID=Gcaud1911.t1|Name=Gcaud1911.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1073bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:7777..8849- (Gracilaria caudata M_176_S67 male)
ATGATCAGAATCACACCATTGTGCTTTGCAACTAAGCCTTCTCTCAGCTT
AAAATTCTTCCCGGCCGAGAGGAGCCTTGCTCGTCACCGCAAACGACCGC
CGTATCATGCGGTATCTGTCCGTTCACGGGCAACATTATCGCCGACGCTG
TGTGAGACCGTGGCGTCAAAATATCGGAAAGTAGATGTCTTCAACCAACA
ACTACAGCCATGTATCCAAAGCGATCAAAAGGCATTGAATCCGGTCATCA
TAATCCCCGGGTATGGTGCCACTGCCAAAGAATATTATCCCATGGCAGAT
GTTCTCCGCGAAACCCTTGGCCCTGATGCATATGTGAGAGTGGTTCCGGT
CAAGCTTTCAACCTGGTTATCCACCGTTGGCGGTCGGCCTATCACTCCCG
TTCTGCGCTTATTGGACGACACCGTACAGAAAGCAATAGAACTATCTGGG
TCATCACAAGTTCACTTGGTTGCCCACTCGGCCGGCGGCTGGATTGCCCG
CATCTATCTCGGCGAAACTCCGTATCCATCTGGCTCATCGTGCGTGTGGA
ATGGTGGCCGGTTTGTGTCGAAGTTGGTGTGCCTCGGCACTCCACATCGT
AGTGATGAAGGGGTTACCAGGAAAAATATGCAGTTTGTTAACGAAAACTA
TCCTGGGGCGTACCATGGCCATGTGCATTATGTAAACATAGTCGGCAGCG
GTGGTTCGATCGCTGAACAACGCAATGGCGCGTGGCGATTTTGGGAATCG
GATTGGTTCACAAGAGTGAGCTATTGCCTGACTGATAAGTCAATAGGATG
CGAAGCGGCTGAAGGCGATGGTACGTTCCTTTTTTTTTGGCCTACAACAT
CCGCTCTTTCTTAAAACAGTTGCTGACTTCATAATTTCACAAACATTCTA
TGTACTGTTATGGAACAGGTATTGTACCACTTTCTTCAGCATTTTTGCCT
GGCGCACAAAATATATGCCTGAAAGGAATCTGGCATTCCCCCTCCTCTAG
AGGGGTTTGGTATGGCCATCCGGATGCAATTAACTACTGGAGCTCCTTCC
TTCAGACAAAGGAAAATGTGTAA
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Coding sequence (CDS) from alignment at NODE_927_length_16063_cov_4.587278:7777..8849-

>Gcaud1911.t1 ID=Gcaud1911.t1|Name=Gcaud1911.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=975bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:7777..8849- (Gracilaria caudata M_176_S67 male)
ATGATCAGAATCACACCATTGTGCTTTGCAACTAAGCCTTCTCTCAGCTT
AAAATTCTTCCCGGCCGAGAGGAGCCTTGCTCGTCACCGCAAACGACCGC
CGTATCATGCGGTATCTGTCCGTTCACGGGCAACATTATCGCCGACGCTG
TGTGAGACCGTGGCGTCAAAATATCGGAAAGTAGATGTCTTCAACCAACA
ACTACAGCCATGTATCCAAAGCGATCAAAAGGCATTGAATCCGGTCATCA
TAATCCCCGGGTATGGTGCCACTGCCAAAGAATATTATCCCATGGCAGAT
GTTCTCCGCGAAACCCTTGGCCCTGATGCATATGTGAGAGTGGTTCCGGT
CAAGCTTTCAACCTGGTTATCCACCGTTGGCGGTCGGCCTATCACTCCCG
TTCTGCGCTTATTGGACGACACCGTACAGAAAGCAATAGAACTATCTGGG
TCATCACAAGTTCACTTGGTTGCCCACTCGGCCGGCGGCTGGATTGCCCG
CATCTATCTCGGCGAAACTCCGTATCCATCTGGCTCATCGTGCGTGTGGA
ATGGTGGCCGGTTTGTGTCGAAGTTGGTGTGCCTCGGCACTCCACATCGT
AGTGATGAAGGGGTTACCAGGAAAAATATGCAGTTTGTTAACGAAAACTA
TCCTGGGGCGTACCATGGCCATGTGCATTATGTAAACATAGTCGGCAGCG
GTGGTTCGATCGCTGAACAACGCAATGGCGCGTGGCGATTTTGGGAATCG
GATTGGTTCACAAGAGTGAGCTATTGCCTGACTGATAAGTCAATAGGATG
CGAAGCGGCTGAAGGCGATGGTATTGTACCACTTTCTTCAGCATTTTTGC
CTGGCGCACAAAATATATGCCTGAAAGGAATCTGGCATTCCCCCTCCTCT
AGAGGGGTTTGGTATGGCCATCCGGATGCAATTAACTACTGGAGCTCCTT
CCTTCAGACAAAGGAAAATGTGTAA
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