Gcaud1912.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1912.t1
Unique Name	Gcaud1912.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_927_length_16063_cov_4.587278	contig	NODE_927_length_16063_cov_4.587278:10956..11834 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707013.1
Preferred name	ACX6
PFAMs	ACOX,Acyl-CoA_dh_1,Acyl-CoA_dh_M
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00052,RC00076
KEGG ko	ko:K00232
KEGG Reaction	R01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathway	ko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG Module	M00087,M00113
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0003997,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016634,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051791,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575
Evalue	3.01e-46
EggNOG OGs	COG1960@1\|root,KOG0135@2759\|Eukaryota
EC	1.3.3.6
Description	acyl-CoA oxidase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1912	Gcaud1912	Gracilaria caudata M_176_S67 male	gene	NODE_927_length_16063_cov_4.587278 10956..11834 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1912.t1.start1	Gcaud1912.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_927_length_16063_cov_4.587278 10956..10958 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1912.t1.CDS1	Gcaud1912.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_927_length_16063_cov_4.587278 10956..11834 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1912.t1.exon1	Gcaud1912.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_927_length_16063_cov_4.587278 10956..11834 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1912.t1.stop1	Gcaud1912.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_927_length_16063_cov_4.587278 11832..11834 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1912.t1	Gcaud1912.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_927_length_16063_cov_4.587278 10956..11834 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+
coding sequence from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+

mRNA sequence

>Gcaud1912.t1 ID=Gcaud1912.t1|Name=Gcaud1912.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MIPLATSYVYALCARDLTNAWYRAIDDGEVSKETHVTSAGYKALFTWFMQ
DALQAAREACGGQGYKSENWIAPLKADRDVMLTFEGANNVMMQQVGKTLL
AEFAAALRNKGRYDDNSILSALNKAPGSSGSSTRLDPAFFQSSFWRLEKK
QVELLGRQYAQAMRARKGSAFHAWNDCLPQAESAARAHMCRVIYDAHRTH
VKKTRAMDVATAEALQLCGQLWGADTIRNNAEFLRLGCVSREDATAAVTQ
IDSLCDSVTSIATELLEGAGIPDQLLAPIAIDYIDYNSRARL*

spliced messenger RNA

>Gcaud1912.t1 ID=Gcaud1912.t1|Name=Gcaud1912.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCCGCTCGCTACTTCGTATGTGTACGCGTTATGTGCCAGAGACTT
GACAAACGCTTGGTATCGAGCCATAGACGACGGTGAAGTTTCAAAGGAAA
CGCACGTCACCTCAGCTGGGTACAAGGCGTTGTTTACCTGGTTTATGCAA
GACGCTTTACAAGCTGCCCGAGAAGCATGTGGCGGGCAAGGTTACAAATC
AGAGAATTGGATTGCCCCTTTGAAGGCTGATCGAGATGTGATGCTGACGT
TCGAGGGGGCCAATAATGTGATGATGCAGCAGGTTGGGAAGACTCTTCTA
GCGGAGTTTGCCGCAGCTCTGCGAAACAAAGGTCGATACGACGACAACTC
TATCTTGTCCGCGTTGAACAAAGCTCCAGGGAGTTCTGGTTCTTCTACTA
GGCTAGATCCTGCATTCTTCCAATCTTCATTCTGGAGACTTGAAAAGAAG
CAGGTCGAGCTCCTGGGAAGACAATACGCACAAGCAATGAGGGCCAGAAA
AGGATCCGCCTTCCACGCATGGAACGATTGTTTACCTCAGGCCGAGAGCG
CCGCAAGAGCCCATATGTGCCGAGTAATATATGATGCTCATCGAACGCAT
GTGAAGAAGACACGGGCGATGGACGTAGCCACTGCCGAAGCTCTGCAACT
CTGTGGACAGCTTTGGGGGGCCGATACAATAAGAAACAACGCAGAGTTCT
TACGTTTGGGATGCGTCTCCCGGGAGGACGCTACCGCAGCGGTAACGCAG
ATTGACAGTTTGTGCGACAGCGTAACTTCGATCGCAACGGAACTTCTTGA
AGGCGCTGGAATCCCTGACCAGCTTCTAGCTCCAATAGCTATCGACTATA
TTGACTACAACTCAAGAGCAAGGCTCTAA

protein sequence of Gcaud1912.t1

>Gcaud1912.t1 ID=Gcaud1912.t1|Name=Gcaud1912.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MIPLATSYVYALCARDLTNAWYRAIDDGEVSKETHVTSAGYKALFTWFMQ
DALQAAREACGGQGYKSENWIAPLKADRDVMLTFEGANNVMMQQVGKTLL
AEFAAALRNKGRYDDNSILSALNKAPGSSGSSTRLDPAFFQSSFWRLEKK
QVELLGRQYAQAMRARKGSAFHAWNDCLPQAESAARAHMCRVIYDAHRTH
VKKTRAMDVATAEALQLCGQLWGADTIRNNAEFLRLGCVSREDATAAVTQ
IDSLCDSVTSIATELLEGAGIPDQLLAPIAIDYIDYNSRARL*

mRNA from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1912.t1 ID=Gcaud1912.t1|Name=Gcaud1912.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+ (Gracilaria caudata M_176_S67 male)
ATGATCCCGCTCGCTACTTCGTATGTGTACGCGTTATGTGCCAGAGACTT
GACAAACGCTTGGTATCGAGCCATAGACGACGGTGAAGTTTCAAAGGAAA
CGCACGTCACCTCAGCTGGGTACAAGGCGTTGTTTACCTGGTTTATGCAA
GACGCTTTACAAGCTGCCCGAGAAGCATGTGGCGGGCAAGGTTACAAATC
AGAGAATTGGATTGCCCCTTTGAAGGCTGATCGAGATGTGATGCTGACGT
TCGAGGGGGCCAATAATGTGATGATGCAGCAGGTTGGGAAGACTCTTCTA
GCGGAGTTTGCCGCAGCTCTGCGAAACAAAGGTCGATACGACGACAACTC
TATCTTGTCCGCGTTGAACAAAGCTCCAGGGAGTTCTGGTTCTTCTACTA
GGCTAGATCCTGCATTCTTCCAATCTTCATTCTGGAGACTTGAAAAGAAG
CAGGTCGAGCTCCTGGGAAGACAATACGCACAAGCAATGAGGGCCAGAAA
AGGATCCGCCTTCCACGCATGGAACGATTGTTTACCTCAGGCCGAGAGCG
CCGCAAGAGCCCATATGTGCCGAGTAATATATGATGCTCATCGAACGCAT
GTGAAGAAGACACGGGCGATGGACGTAGCCACTGCCGAAGCTCTGCAACT
CTGTGGACAGCTTTGGGGGGCCGATACAATAAGAAACAACGCAGAGTTCT
TACGTTTGGGATGCGTCTCCCGGGAGGACGCTACCGCAGCGGTAACGCAG
ATTGACAGTTTGTGCGACAGCGTAACTTCGATCGCAACGGAACTTCTTGA
AGGCGCTGGAATCCCTGACCAGCTTCTAGCTCCAATAGCTATCGACTATA
TTGACTACAACTCAAGAGCAAGGCTCTAA

Coding sequence (CDS) from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+

>Gcaud1912.t1 ID=Gcaud1912.t1|Name=Gcaud1912.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:10956..11834+ (Gracilaria caudata M_176_S67 male)
ATGATCCCGCTCGCTACTTCGTATGTGTACGCGTTATGTGCCAGAGACTT
GACAAACGCTTGGTATCGAGCCATAGACGACGGTGAAGTTTCAAAGGAAA
CGCACGTCACCTCAGCTGGGTACAAGGCGTTGTTTACCTGGTTTATGCAA
GACGCTTTACAAGCTGCCCGAGAAGCATGTGGCGGGCAAGGTTACAAATC
AGAGAATTGGATTGCCCCTTTGAAGGCTGATCGAGATGTGATGCTGACGT
TCGAGGGGGCCAATAATGTGATGATGCAGCAGGTTGGGAAGACTCTTCTA
GCGGAGTTTGCCGCAGCTCTGCGAAACAAAGGTCGATACGACGACAACTC
TATCTTGTCCGCGTTGAACAAAGCTCCAGGGAGTTCTGGTTCTTCTACTA
GGCTAGATCCTGCATTCTTCCAATCTTCATTCTGGAGACTTGAAAAGAAG
CAGGTCGAGCTCCTGGGAAGACAATACGCACAAGCAATGAGGGCCAGAAA
AGGATCCGCCTTCCACGCATGGAACGATTGTTTACCTCAGGCCGAGAGCG
CCGCAAGAGCCCATATGTGCCGAGTAATATATGATGCTCATCGAACGCAT
GTGAAGAAGACACGGGCGATGGACGTAGCCACTGCCGAAGCTCTGCAACT
CTGTGGACAGCTTTGGGGGGCCGATACAATAAGAAACAACGCAGAGTTCT
TACGTTTGGGATGCGTCTCCCGGGAGGACGCTACCGCAGCGGTAACGCAG
ATTGACAGTTTGTGCGACAGCGTAACTTCGATCGCAACGGAACTTCTTGA
AGGCGCTGGAATCCCTGACCAGCTTCTAGCTCCAATAGCTATCGACTATA
TTGACTACAACTCAAGAGCAAGGCTCTAA