Gcaud1466.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1466.t1
Unique Name	Gcaud1466.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1024_length_14934_cov_4.428485	contig	NODE_1024_length_14934_cov_4.428485:12503..13318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72228.T5AL08
PFAMs	Alpha_kinase,VWA_2
Max annot lvl	4751\|Fungi
Evalue	4.23e-23
EggNOG OGs	2CYGU@1\|root,2S4BB@2759\|Eukaryota,39VJ2@33154\|Opisthokonta,3NZEN@4751\|Fungi,3QTPU@4890\|Ascomycota,21RMM@147550\|Sordariomycetes,3TU47@5125\|Hypocreales
Description	Alpha-kinase family
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1466	Gcaud1466	Gracilaria caudata M_176_S67 male	gene	NODE_1024_length_14934_cov_4.428485 12503..13318 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1466.t1.start1	Gcaud1466.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1024_length_14934_cov_4.428485 12503..12505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1466.t1.CDS1	Gcaud1466.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1024_length_14934_cov_4.428485 12503..13318 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1466.t1.exon1	Gcaud1466.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1024_length_14934_cov_4.428485 12503..13318 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1466.t1.stop1	Gcaud1466.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1024_length_14934_cov_4.428485 13316..13318 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1466.t1	Gcaud1466.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1024_length_14934_cov_4.428485 12503..13318 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+
coding sequence from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+

mRNA sequence

>Gcaud1466.t1 ID=Gcaud1466.t1|Name=Gcaud1466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=272bp
MGLINSKVRNESTPFAEGGTRLAYKATVVGHSFCGYPKGTRLVMKVIKPE
CYNQGLRLTQDDIKAQELAHTLCEVFNTKRMINKLVYSRIGVIVKAEKEY
KDWAGNLYVLRGEDILYEELIVGEYSKFNSNSGWSDSSYDLPNFFSHWSW
VHSSGKYLVCDLQGHRGRPGGPPLRTSRGSITNYYLFTDPVVMTDGEGNR
FGCTDLGMEGIRSWFEEHRCNKLCTKYGLVTKRPRRMPGGSSKYAAAQGT
TYSAGAGVPRYAFKGTTYRYN*

spliced messenger RNA

>Gcaud1466.t1 ID=Gcaud1466.t1|Name=Gcaud1466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTCATCAACAGCAAGGTTCGAAACGAATCAACACCATTTGCCGA
AGGAGGGACGAGGTTGGCGTACAAGGCAACTGTTGTAGGGCACAGCTTCT
GTGGATATCCGAAAGGAACTCGGTTGGTGATGAAGGTTATCAAGCCAGAA
TGTTATAACCAGGGACTTCGCCTTACTCAAGATGACATCAAGGCGCAGGA
ATTAGCACACACGCTTTGTGAAGTTTTCAACACAAAGCGAATGATCAACA
AGTTGGTGTATTCAAGGATTGGGGTTATAGTGAAGGCAGAAAAAGAATAC
AAGGACTGGGCAGGAAATCTATATGTGTTGCGGGGAGAGGACATATTGTA
TGAAGAACTGATTGTCGGGGAGTATTCGAAATTCAACTCAAACAGCGGTT
GGAGTGACAGCTCGTACGATTTGCCCAATTTCTTTTCCCACTGGTCTTGG
GTTCACAGCTCTGGGAAATACCTCGTTTGCGACCTTCAGGGGCACAGGGG
TAGACCGGGCGGACCACCACTGCGAACTTCCAGGGGAAGCATTACAAATT
ACTATCTGTTCACAGATCCCGTTGTGATGACAGACGGGGAGGGAAATAGG
TTTGGGTGCACTGACCTTGGAATGGAAGGCATACGCAGTTGGTTCGAGGA
GCATAGATGCAATAAACTTTGCACAAAGTACGGGCTTGTAACTAAGCGTC
CTAGGAGGATGCCAGGGGGATCATCAAAGTATGCGGCTGCGCAAGGAACC
ACGTATAGTGCGGGAGCAGGAGTGCCGCGCTATGCTTTCAAAGGAACCAC
GTACCGGTATAACTGA

protein sequence of Gcaud1466.t1

>Gcaud1466.t1 ID=Gcaud1466.t1|Name=Gcaud1466.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=272bp
MGLINSKVRNESTPFAEGGTRLAYKATVVGHSFCGYPKGTRLVMKVIKPE
CYNQGLRLTQDDIKAQELAHTLCEVFNTKRMINKLVYSRIGVIVKAEKEY
KDWAGNLYVLRGEDILYEELIVGEYSKFNSNSGWSDSSYDLPNFFSHWSW
VHSSGKYLVCDLQGHRGRPGGPPLRTSRGSITNYYLFTDPVVMTDGEGNR
FGCTDLGMEGIRSWFEEHRCNKLCTKYGLVTKRPRRMPGGSSKYAAAQGT
TYSAGAGVPRYAFKGTTYRYN*

mRNA from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1466.t1 ID=Gcaud1466.t1|Name=Gcaud1466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+ (Gracilaria caudata M_176_S67 male)
ATGGGACTCATCAACAGCAAGGTTCGAAACGAATCAACACCATTTGCCGA
AGGAGGGACGAGGTTGGCGTACAAGGCAACTGTTGTAGGGCACAGCTTCT
GTGGATATCCGAAAGGAACTCGGTTGGTGATGAAGGTTATCAAGCCAGAA
TGTTATAACCAGGGACTTCGCCTTACTCAAGATGACATCAAGGCGCAGGA
ATTAGCACACACGCTTTGTGAAGTTTTCAACACAAAGCGAATGATCAACA
AGTTGGTGTATTCAAGGATTGGGGTTATAGTGAAGGCAGAAAAAGAATAC
AAGGACTGGGCAGGAAATCTATATGTGTTGCGGGGAGAGGACATATTGTA
TGAAGAACTGATTGTCGGGGAGTATTCGAAATTCAACTCAAACAGCGGTT
GGAGTGACAGCTCGTACGATTTGCCCAATTTCTTTTCCCACTGGTCTTGG
GTTCACAGCTCTGGGAAATACCTCGTTTGCGACCTTCAGGGGCACAGGGG
TAGACCGGGCGGACCACCACTGCGAACTTCCAGGGGAAGCATTACAAATT
ACTATCTGTTCACAGATCCCGTTGTGATGACAGACGGGGAGGGAAATAGG
TTTGGGTGCACTGACCTTGGAATGGAAGGCATACGCAGTTGGTTCGAGGA
GCATAGATGCAATAAACTTTGCACAAAGTACGGGCTTGTAACTAAGCGTC
CTAGGAGGATGCCAGGGGGATCATCAAAGTATGCGGCTGCGCAAGGAACC
ACGTATAGTGCGGGAGCAGGAGTGCCGCGCTATGCTTTCAAAGGAACCAC
GTACCGGTATAACTGA

Coding sequence (CDS) from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+

>Gcaud1466.t1 ID=Gcaud1466.t1|Name=Gcaud1466.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=816bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:12503..13318+ (Gracilaria caudata M_176_S67 male)
ATGGGACTCATCAACAGCAAGGTTCGAAACGAATCAACACCATTTGCCGA
AGGAGGGACGAGGTTGGCGTACAAGGCAACTGTTGTAGGGCACAGCTTCT
GTGGATATCCGAAAGGAACTCGGTTGGTGATGAAGGTTATCAAGCCAGAA
TGTTATAACCAGGGACTTCGCCTTACTCAAGATGACATCAAGGCGCAGGA
ATTAGCACACACGCTTTGTGAAGTTTTCAACACAAAGCGAATGATCAACA
AGTTGGTGTATTCAAGGATTGGGGTTATAGTGAAGGCAGAAAAAGAATAC
AAGGACTGGGCAGGAAATCTATATGTGTTGCGGGGAGAGGACATATTGTA
TGAAGAACTGATTGTCGGGGAGTATTCGAAATTCAACTCAAACAGCGGTT
GGAGTGACAGCTCGTACGATTTGCCCAATTTCTTTTCCCACTGGTCTTGG
GTTCACAGCTCTGGGAAATACCTCGTTTGCGACCTTCAGGGGCACAGGGG
TAGACCGGGCGGACCACCACTGCGAACTTCCAGGGGAAGCATTACAAATT
ACTATCTGTTCACAGATCCCGTTGTGATGACAGACGGGGAGGGAAATAGG
TTTGGGTGCACTGACCTTGGAATGGAAGGCATACGCAGTTGGTTCGAGGA
GCATAGATGCAATAAACTTTGCACAAAGTACGGGCTTGTAACTAAGCGTC
CTAGGAGGATGCCAGGGGGATCATCAAAGTATGCGGCTGCGCAAGGAACC
ACGTATAGTGCGGGAGCAGGAGTGCCGCGCTATGCTTTCAAAGGAACCAC
GTACCGGTATAACTGA