Gcaud3596.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3596.t1
Unique Name	Gcaud3596.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_920_length_16131_cov_4.457419	contig	NODE_920_length_16131_cov_4.457419:1204..2187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3596	Gcaud3596	Gracilaria caudata M_176_S67 male	gene	NODE_920_length_16131_cov_4.457419 1204..2187 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3596.t1.start1	Gcaud3596.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_920_length_16131_cov_4.457419 1204..1206 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3596.t1.CDS1	Gcaud3596.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_920_length_16131_cov_4.457419 1204..2187 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3596.t1.exon1	Gcaud3596.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_920_length_16131_cov_4.457419 1204..2187 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3596.t1.stop1	Gcaud3596.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_920_length_16131_cov_4.457419 2185..2187 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3596.t1	Gcaud3596.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_920_length_16131_cov_4.457419 1204..2187 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+
coding sequence from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+

mRNA sequence

>Gcaud3596.t1 ID=Gcaud3596.t1|Name=Gcaud3596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MTSKLSLIFSGQVPASEAFFGVPETFKELTLICNSLDPYVLSTFLHLEQI
EWTSQPFNFSDLIYLKPRVGSKLRSLSFQDIEPLFPKEISLPRYKHLFHL
IKRLHVKNEIPLTRAGVDFLSRVAPSLEVLQVSIPTSLVPLLSTYIEELK
HLKVLDLDILASDLPEVRDGFLKHLYETCNNIWHGLLGCPSSLEHLRIPK
GCIGRQMFFEVLKKFKMSLQAFQVPLLDDGLEHEGIFFEACWKDIKDALG
RVPIVCPRLKQLCVLKLSGLEGIREGAGEEEGNECDKEMFRNLDQLDVAL
TGFDKDSFFYGLKAFQTPSSVLRRDNF*

spliced messenger RNA

>Gcaud3596.t1 ID=Gcaud3596.t1|Name=Gcaud3596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTAAACTTTCTCTCATATTTTCTGGACAGGTTCCAGCGTCTGA
AGCGTTTTTTGGTGTCCCAGAAACATTCAAAGAGCTCACTTTAATCTGCA
ACTCGCTGGACCCATACGTTCTCAGCACATTTTTGCATCTTGAACAAATT
GAATGGACAAGTCAACCATTCAACTTTTCGGATCTCATATATCTGAAGCC
TAGAGTGGGAAGCAAGTTGCGTTCTCTTTCTTTTCAAGATATTGAGCCTC
TCTTTCCCAAAGAAATCTCGTTGCCTCGGTATAAGCACCTCTTCCACCTC
ATCAAACGATTGCATGTGAAGAATGAGATACCGCTGACACGAGCAGGAGT
TGATTTTCTGTCGCGTGTGGCCCCTTCTTTAGAAGTGCTTCAGGTTTCAA
TACCGACGAGTTTGGTTCCTCTATTGTCAACATATATTGAAGAGTTGAAG
CACTTGAAGGTGCTCGATCTGGATATACTTGCATCGGATTTACCCGAAGT
GCGTGATGGCTTTCTCAAGCACCTTTATGAGACGTGCAATAACATTTGGC
ATGGCCTTCTGGGCTGCCCATCTTCTTTGGAGCACTTGAGAATACCAAAG
GGATGTATTGGACGACAGATGTTCTTTGAAGTCTTGAAAAAATTCAAAAT
GTCTCTACAAGCTTTTCAAGTACCATTGTTGGATGACGGCTTAGAACATG
AAGGCATTTTCTTCGAAGCATGCTGGAAAGACATAAAGGATGCACTGGGA
CGGGTGCCAATTGTTTGTCCGCGGTTGAAGCAACTGTGCGTTCTGAAGCT
GAGTGGTTTGGAAGGCATTAGAGAGGGAGCTGGGGAAGAGGAGGGTAATG
AGTGTGATAAGGAAATGTTCCGAAATCTGGATCAACTAGATGTCGCACTC
ACAGGATTTGACAAGGACTCATTTTTTTATGGCCTGAAAGCCTTTCAAAC
GCCCTCTTCGGTACTTCGTCGAGACAACTTTTGA

protein sequence of Gcaud3596.t1

>Gcaud3596.t1 ID=Gcaud3596.t1|Name=Gcaud3596.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MTSKLSLIFSGQVPASEAFFGVPETFKELTLICNSLDPYVLSTFLHLEQI
EWTSQPFNFSDLIYLKPRVGSKLRSLSFQDIEPLFPKEISLPRYKHLFHL
IKRLHVKNEIPLTRAGVDFLSRVAPSLEVLQVSIPTSLVPLLSTYIEELK
HLKVLDLDILASDLPEVRDGFLKHLYETCNNIWHGLLGCPSSLEHLRIPK
GCIGRQMFFEVLKKFKMSLQAFQVPLLDDGLEHEGIFFEACWKDIKDALG
RVPIVCPRLKQLCVLKLSGLEGIREGAGEEEGNECDKEMFRNLDQLDVAL
TGFDKDSFFYGLKAFQTPSSVLRRDNF*

mRNA from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3596.t1 ID=Gcaud3596.t1|Name=Gcaud3596.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+ (Gracilaria caudata M_176_S67 male)
ATGACCTCTAAACTTTCTCTCATATTTTCTGGACAGGTTCCAGCGTCTGA
AGCGTTTTTTGGTGTCCCAGAAACATTCAAAGAGCTCACTTTAATCTGCA
ACTCGCTGGACCCATACGTTCTCAGCACATTTTTGCATCTTGAACAAATT
GAATGGACAAGTCAACCATTCAACTTTTCGGATCTCATATATCTGAAGCC
TAGAGTGGGAAGCAAGTTGCGTTCTCTTTCTTTTCAAGATATTGAGCCTC
TCTTTCCCAAAGAAATCTCGTTGCCTCGGTATAAGCACCTCTTCCACCTC
ATCAAACGATTGCATGTGAAGAATGAGATACCGCTGACACGAGCAGGAGT
TGATTTTCTGTCGCGTGTGGCCCCTTCTTTAGAAGTGCTTCAGGTTTCAA
TACCGACGAGTTTGGTTCCTCTATTGTCAACATATATTGAAGAGTTGAAG
CACTTGAAGGTGCTCGATCTGGATATACTTGCATCGGATTTACCCGAAGT
GCGTGATGGCTTTCTCAAGCACCTTTATGAGACGTGCAATAACATTTGGC
ATGGCCTTCTGGGCTGCCCATCTTCTTTGGAGCACTTGAGAATACCAAAG
GGATGTATTGGACGACAGATGTTCTTTGAAGTCTTGAAAAAATTCAAAAT
GTCTCTACAAGCTTTTCAAGTACCATTGTTGGATGACGGCTTAGAACATG
AAGGCATTTTCTTCGAAGCATGCTGGAAAGACATAAAGGATGCACTGGGA
CGGGTGCCAATTGTTTGTCCGCGGTTGAAGCAACTGTGCGTTCTGAAGCT
GAGTGGTTTGGAAGGCATTAGAGAGGGAGCTGGGGAAGAGGAGGGTAATG
AGTGTGATAAGGAAATGTTCCGAAATCTGGATCAACTAGATGTCGCACTC
ACAGGATTTGACAAGGACTCATTTTTTTATGGCCTGAAAGCCTTTCAAAC
GCCCTCTTCGGTACTTCGTCGAGACAACTTTTGA

Coding sequence (CDS) from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+

>Gcaud3596.t1 ID=Gcaud3596.t1|Name=Gcaud3596.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_920_length_16131_cov_4.457419:1204..2187+ (Gracilaria caudata M_176_S67 male)
ATGACCTCTAAACTTTCTCTCATATTTTCTGGACAGGTTCCAGCGTCTGA
AGCGTTTTTTGGTGTCCCAGAAACATTCAAAGAGCTCACTTTAATCTGCA
ACTCGCTGGACCCATACGTTCTCAGCACATTTTTGCATCTTGAACAAATT
GAATGGACAAGTCAACCATTCAACTTTTCGGATCTCATATATCTGAAGCC
TAGAGTGGGAAGCAAGTTGCGTTCTCTTTCTTTTCAAGATATTGAGCCTC
TCTTTCCCAAAGAAATCTCGTTGCCTCGGTATAAGCACCTCTTCCACCTC
ATCAAACGATTGCATGTGAAGAATGAGATACCGCTGACACGAGCAGGAGT
TGATTTTCTGTCGCGTGTGGCCCCTTCTTTAGAAGTGCTTCAGGTTTCAA
TACCGACGAGTTTGGTTCCTCTATTGTCAACATATATTGAAGAGTTGAAG
CACTTGAAGGTGCTCGATCTGGATATACTTGCATCGGATTTACCCGAAGT
GCGTGATGGCTTTCTCAAGCACCTTTATGAGACGTGCAATAACATTTGGC
ATGGCCTTCTGGGCTGCCCATCTTCTTTGGAGCACTTGAGAATACCAAAG
GGATGTATTGGACGACAGATGTTCTTTGAAGTCTTGAAAAAATTCAAAAT
GTCTCTACAAGCTTTTCAAGTACCATTGTTGGATGACGGCTTAGAACATG
AAGGCATTTTCTTCGAAGCATGCTGGAAAGACATAAAGGATGCACTGGGA
CGGGTGCCAATTGTTTGTCCGCGGTTGAAGCAACTGTGCGTTCTGAAGCT
GAGTGGTTTGGAAGGCATTAGAGAGGGAGCTGGGGAAGAGGAGGGTAATG
AGTGTGATAAGGAAATGTTCCGAAATCTGGATCAACTAGATGTCGCACTC
ACAGGATTTGACAAGGACTCATTTTTTTATGGCCTGAAAGCCTTTCAAAC
GCCCTCTTCGGTACTTCGTCGAGACAACTTTTGA