Gcaud2071.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2071.t1
Unique Name	Gcaud2071.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	722

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_917_length_16159_cov_4.533047	contig	NODE_917_length_16159_cov_4.533047:5805..7970 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps21525
Max annot lvl	2836\|Bacillariophyta
Evalue	0.000135
EggNOG OGs	2ESN4@1\|root,2SV5Y@2759\|Eukaryota,2XDMU@2836\|Bacillariophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2071	Gcaud2071	Gracilaria caudata M_176_S67 male	gene	NODE_917_length_16159_cov_4.533047 5805..7970 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2071.t1.stop1	Gcaud2071.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_917_length_16159_cov_4.533047 5805..5807 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2071.t1.CDS1	Gcaud2071.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_917_length_16159_cov_4.533047 5805..7970 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2071.t1.exon1	Gcaud2071.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_917_length_16159_cov_4.533047 5805..7970 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2071.t1.start1	Gcaud2071.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_917_length_16159_cov_4.533047 7968..7970 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2071.t1	Gcaud2071.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_917_length_16159_cov_4.533047 5805..7970 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_917_length_16159_cov_4.533047:5805..7970-
coding sequence from alignment at NODE_917_length_16159_cov_4.533047:5805..7970-

mRNA sequence

>Gcaud2071.t1 ID=Gcaud2071.t1|Name=Gcaud2071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=722bp
MEADLTIVHVRPRTEEERLRDATSEVEARTSIISIPANRISPQTLKLEPT
TPVWENETNSPSEAHTSFSPLSNYSPVSSTKKREHSRRERLKRAAGRICY
KHLLNEKHEGDEDGTLVEKVLETMSPTSQISMSGSDRDDGIEKLREAINV
HLFPREGEPPERTKNALYLLKKSVNAASDIKGSCIDTVLRLIFETMKNNS
MNVPIQEKGCHLLTKLSRDSSQVQTAIVRKGGVRLIIDSMATHSKAPDAQ
SRAIGALLCLTMDKTARAQILERRGAEMVSWAMREFPDVLLLQKNGSTCL
CNLAFNSEESKRRIGRVGGIHAVVSAMNKFVGEADLQARCCLALRNLTWG
LRANQWIAGRCHAMEAVLQCMRLMKSDMNIQYQGCVALANLCDEEIENRG
RAADLGVYKIATELVRKHMQNASLCEHALTVIRNICIRSDQNQRNVGGDG
GIDLVLSCMKVHRFCKRVVERGCNVLRHLFFDKSNRLRFAECNGVDALVR
IMRDGAEHSDVSEAVLFAIGNAIYDNLDSKRAVGRLGGIPALVEIMSNHL
DSAAIQEHACRALRNLADADELNLRLIIECGAVDAVLLAMMGYLDNGNIQ
EQGCAMLVNMTVFEEGLRQMRVLQASLVVTRSKSMHIDKQMVQCQAEALL
TRLKHGSHASGTSIALPKKKISKAVTLRKAASRAAFGKRPKSEAKNLVSR
ASDDAPCNGKLVQLLGSSGST*

spliced messenger RNA

>Gcaud2071.t1 ID=Gcaud2071.t1|Name=Gcaud2071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:5805..7970- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAGACTTAACTATAGTGCATGTTCGACCGAGAACCGAAGAAGA
ACGACTAAGAGATGCCACATCAGAAGTAGAGGCTCGCACCAGCATCATTT
CAATCCCCGCAAATCGCATTAGTCCTCAGACTTTAAAACTAGAACCTACG
ACACCTGTGTGGGAGAATGAAACGAATTCACCATCTGAAGCTCACACATC
CTTTTCCCCGCTTTCAAACTATTCTCCAGTTAGCTCGACGAAGAAGAGAG
AACATTCAAGGCGAGAGAGGTTGAAGAGAGCAGCTGGTCGTATTTGTTAT
AAGCACTTGTTAAACGAAAAACATGAAGGTGATGAAGATGGAACATTGGT
TGAGAAGGTGCTAGAAACGATGTCCCCCACAAGTCAGATTTCTATGTCGG
GTTCTGATAGAGACGATGGAATAGAAAAGCTACGGGAAGCTATTAATGTG
CACTTGTTTCCCAGAGAGGGGGAACCACCTGAACGGACAAAGAATGCTTT
GTATCTTCTAAAAAAGAGTGTGAACGCAGCAAGCGACATCAAGGGCTCCT
GTATAGATACCGTGCTTCGCTTGATTTTCGAAACCATGAAGAACAACTCT
ATGAATGTGCCAATACAGGAAAAAGGATGTCATCTGCTGACCAAGTTATC
CCGTGATTCCTCGCAAGTACAGACCGCAATTGTCCGTAAAGGCGGAGTGC
GACTGATCATCGATTCCATGGCGACTCATAGTAAAGCGCCGGATGCCCAG
AGCCGCGCCATTGGAGCTCTATTGTGCCTTACCATGGACAAAACAGCAAG
AGCTCAGATCTTAGAGCGAAGGGGTGCTGAAATGGTTTCATGGGCAATGA
GAGAGTTCCCAGACGTATTGCTTCTCCAAAAAAACGGGTCTACATGTCTT
TGCAATCTGGCCTTCAACTCCGAAGAGAGCAAAAGAAGAATAGGTAGAGT
TGGAGGGATACATGCTGTTGTTAGCGCTATGAACAAGTTTGTTGGGGAGG
CAGACCTTCAAGCACGATGTTGCCTCGCTCTGAGGAACCTAACATGGGGA
CTGAGAGCGAACCAGTGGATAGCTGGACGGTGTCATGCTATGGAAGCTGT
CCTCCAATGTATGAGATTGATGAAGTCTGATATGAATATTCAATACCAGG
GATGCGTGGCATTAGCAAACTTATGTGACGAGGAAATAGAAAATCGCGGC
CGAGCTGCAGATCTTGGTGTGTACAAAATTGCTACAGAGCTAGTGAGAAA
GCATATGCAGAACGCGTCTCTGTGCGAACATGCTCTGACTGTTATTCGCA
ACATATGTATTCGCAGCGACCAAAACCAAAGGAATGTAGGCGGAGACGGT
GGAATCGATTTGGTGTTATCTTGCATGAAAGTGCACCGCTTTTGTAAGAG
AGTTGTTGAAAGAGGCTGCAATGTTCTGAGGCACTTGTTCTTTGACAAAA
GCAATAGACTGCGATTCGCAGAATGTAACGGGGTGGATGCTCTGGTGCGC
ATAATGAGGGATGGTGCCGAACATTCGGACGTTAGCGAAGCAGTGCTCTT
CGCAATTGGAAACGCCATTTACGATAATCTAGACAGCAAACGAGCCGTTG
GAAGGCTAGGAGGCATACCAGCCCTAGTCGAAATCATGTCGAATCACTTG
GACTCTGCTGCGATTCAGGAACACGCATGTCGCGCTCTGCGCAATCTAGC
GGACGCCGATGAGCTCAATCTGAGACTCATAATAGAATGTGGAGCAGTTG
ATGCTGTGTTGCTGGCTATGATGGGTTACCTGGACAACGGCAATATCCAA
GAGCAGGGATGTGCGATGCTGGTGAATATGACGGTGTTTGAGGAAGGCTT
GAGACAAATGAGGGTCCTTCAAGCCTCGCTTGTAGTGACAAGATCAAAGA
GCATGCATATTGACAAGCAAATGGTGCAGTGCCAGGCTGAAGCCTTGCTG
ACGCGGCTCAAGCATGGCTCACATGCCTCTGGGACATCGATTGCGCTTCC
CAAGAAGAAAATATCCAAGGCGGTTACATTGCGTAAAGCAGCGTCGCGTG
CTGCATTTGGTAAGCGGCCAAAATCTGAAGCCAAGAACCTTGTGAGCCGT
GCGAGTGATGATGCACCGTGCAATGGCAAGCTTGTGCAGCTGCTGGGAAG
TTCTGGCAGCACTTAG

protein sequence of Gcaud2071.t1

>Gcaud2071.t1 ID=Gcaud2071.t1|Name=Gcaud2071.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=722bp
MEADLTIVHVRPRTEEERLRDATSEVEARTSIISIPANRISPQTLKLEPT
TPVWENETNSPSEAHTSFSPLSNYSPVSSTKKREHSRRERLKRAAGRICY
KHLLNEKHEGDEDGTLVEKVLETMSPTSQISMSGSDRDDGIEKLREAINV
HLFPREGEPPERTKNALYLLKKSVNAASDIKGSCIDTVLRLIFETMKNNS
MNVPIQEKGCHLLTKLSRDSSQVQTAIVRKGGVRLIIDSMATHSKAPDAQ
SRAIGALLCLTMDKTARAQILERRGAEMVSWAMREFPDVLLLQKNGSTCL
CNLAFNSEESKRRIGRVGGIHAVVSAMNKFVGEADLQARCCLALRNLTWG
LRANQWIAGRCHAMEAVLQCMRLMKSDMNIQYQGCVALANLCDEEIENRG
RAADLGVYKIATELVRKHMQNASLCEHALTVIRNICIRSDQNQRNVGGDG
GIDLVLSCMKVHRFCKRVVERGCNVLRHLFFDKSNRLRFAECNGVDALVR
IMRDGAEHSDVSEAVLFAIGNAIYDNLDSKRAVGRLGGIPALVEIMSNHL
DSAAIQEHACRALRNLADADELNLRLIIECGAVDAVLLAMMGYLDNGNIQ
EQGCAMLVNMTVFEEGLRQMRVLQASLVVTRSKSMHIDKQMVQCQAEALL
TRLKHGSHASGTSIALPKKKISKAVTLRKAASRAAFGKRPKSEAKNLVSR
ASDDAPCNGKLVQLLGSSGST*

mRNA from alignment at NODE_917_length_16159_cov_4.533047:5805..7970-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2071.t1 ID=Gcaud2071.t1|Name=Gcaud2071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:5805..7970- (Gracilaria caudata M_176_S67 male)
ATGGAAGCAGACTTAACTATAGTGCATGTTCGACCGAGAACCGAAGAAGA
ACGACTAAGAGATGCCACATCAGAAGTAGAGGCTCGCACCAGCATCATTT
CAATCCCCGCAAATCGCATTAGTCCTCAGACTTTAAAACTAGAACCTACG
ACACCTGTGTGGGAGAATGAAACGAATTCACCATCTGAAGCTCACACATC
CTTTTCCCCGCTTTCAAACTATTCTCCAGTTAGCTCGACGAAGAAGAGAG
AACATTCAAGGCGAGAGAGGTTGAAGAGAGCAGCTGGTCGTATTTGTTAT
AAGCACTTGTTAAACGAAAAACATGAAGGTGATGAAGATGGAACATTGGT
TGAGAAGGTGCTAGAAACGATGTCCCCCACAAGTCAGATTTCTATGTCGG
GTTCTGATAGAGACGATGGAATAGAAAAGCTACGGGAAGCTATTAATGTG
CACTTGTTTCCCAGAGAGGGGGAACCACCTGAACGGACAAAGAATGCTTT
GTATCTTCTAAAAAAGAGTGTGAACGCAGCAAGCGACATCAAGGGCTCCT
GTATAGATACCGTGCTTCGCTTGATTTTCGAAACCATGAAGAACAACTCT
ATGAATGTGCCAATACAGGAAAAAGGATGTCATCTGCTGACCAAGTTATC
CCGTGATTCCTCGCAAGTACAGACCGCAATTGTCCGTAAAGGCGGAGTGC
GACTGATCATCGATTCCATGGCGACTCATAGTAAAGCGCCGGATGCCCAG
AGCCGCGCCATTGGAGCTCTATTGTGCCTTACCATGGACAAAACAGCAAG
AGCTCAGATCTTAGAGCGAAGGGGTGCTGAAATGGTTTCATGGGCAATGA
GAGAGTTCCCAGACGTATTGCTTCTCCAAAAAAACGGGTCTACATGTCTT
TGCAATCTGGCCTTCAACTCCGAAGAGAGCAAAAGAAGAATAGGTAGAGT
TGGAGGGATACATGCTGTTGTTAGCGCTATGAACAAGTTTGTTGGGGAGG
CAGACCTTCAAGCACGATGTTGCCTCGCTCTGAGGAACCTAACATGGGGA
CTGAGAGCGAACCAGTGGATAGCTGGACGGTGTCATGCTATGGAAGCTGT
CCTCCAATGTATGAGATTGATGAAGTCTGATATGAATATTCAATACCAGG
GATGCGTGGCATTAGCAAACTTATGTGACGAGGAAATAGAAAATCGCGGC
CGAGCTGCAGATCTTGGTGTGTACAAAATTGCTACAGAGCTAGTGAGAAA
GCATATGCAGAACGCGTCTCTGTGCGAACATGCTCTGACTGTTATTCGCA
ACATATGTATTCGCAGCGACCAAAACCAAAGGAATGTAGGCGGAGACGGT
GGAATCGATTTGGTGTTATCTTGCATGAAAGTGCACCGCTTTTGTAAGAG
AGTTGTTGAAAGAGGCTGCAATGTTCTGAGGCACTTGTTCTTTGACAAAA
GCAATAGACTGCGATTCGCAGAATGTAACGGGGTGGATGCTCTGGTGCGC
ATAATGAGGGATGGTGCCGAACATTCGGACGTTAGCGAAGCAGTGCTCTT
CGCAATTGGAAACGCCATTTACGATAATCTAGACAGCAAACGAGCCGTTG
GAAGGCTAGGAGGCATACCAGCCCTAGTCGAAATCATGTCGAATCACTTG
GACTCTGCTGCGATTCAGGAACACGCATGTCGCGCTCTGCGCAATCTAGC
GGACGCCGATGAGCTCAATCTGAGACTCATAATAGAATGTGGAGCAGTTG
ATGCTGTGTTGCTGGCTATGATGGGTTACCTGGACAACGGCAATATCCAA
GAGCAGGGATGTGCGATGCTGGTGAATATGACGGTGTTTGAGGAAGGCTT
GAGACAAATGAGGGTCCTTCAAGCCTCGCTTGTAGTGACAAGATCAAAGA
GCATGCATATTGACAAGCAAATGGTGCAGTGCCAGGCTGAAGCCTTGCTG
ACGCGGCTCAAGCATGGCTCACATGCCTCTGGGACATCGATTGCGCTTCC
CAAGAAGAAAATATCCAAGGCGGTTACATTGCGTAAAGCAGCGTCGCGTG
CTGCATTTGGTAAGCGGCCAAAATCTGAAGCCAAGAACCTTGTGAGCCGT
GCGAGTGATGATGCACCGTGCAATGGCAAGCTTGTGCAGCTGCTGGGAAG
TTCTGGCAGCACTTAG

Coding sequence (CDS) from alignment at NODE_917_length_16159_cov_4.533047:5805..7970-

>Gcaud2071.t1 ID=Gcaud2071.t1|Name=Gcaud2071.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2166bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:5805..7970- (Gracilaria caudata M_176_S67 male)
ATGGAAGCAGACTTAACTATAGTGCATGTTCGACCGAGAACCGAAGAAGA
ACGACTAAGAGATGCCACATCAGAAGTAGAGGCTCGCACCAGCATCATTT
CAATCCCCGCAAATCGCATTAGTCCTCAGACTTTAAAACTAGAACCTACG
ACACCTGTGTGGGAGAATGAAACGAATTCACCATCTGAAGCTCACACATC
CTTTTCCCCGCTTTCAAACTATTCTCCAGTTAGCTCGACGAAGAAGAGAG
AACATTCAAGGCGAGAGAGGTTGAAGAGAGCAGCTGGTCGTATTTGTTAT
AAGCACTTGTTAAACGAAAAACATGAAGGTGATGAAGATGGAACATTGGT
TGAGAAGGTGCTAGAAACGATGTCCCCCACAAGTCAGATTTCTATGTCGG
GTTCTGATAGAGACGATGGAATAGAAAAGCTACGGGAAGCTATTAATGTG
CACTTGTTTCCCAGAGAGGGGGAACCACCTGAACGGACAAAGAATGCTTT
GTATCTTCTAAAAAAGAGTGTGAACGCAGCAAGCGACATCAAGGGCTCCT
GTATAGATACCGTGCTTCGCTTGATTTTCGAAACCATGAAGAACAACTCT
ATGAATGTGCCAATACAGGAAAAAGGATGTCATCTGCTGACCAAGTTATC
CCGTGATTCCTCGCAAGTACAGACCGCAATTGTCCGTAAAGGCGGAGTGC
GACTGATCATCGATTCCATGGCGACTCATAGTAAAGCGCCGGATGCCCAG
AGCCGCGCCATTGGAGCTCTATTGTGCCTTACCATGGACAAAACAGCAAG
AGCTCAGATCTTAGAGCGAAGGGGTGCTGAAATGGTTTCATGGGCAATGA
GAGAGTTCCCAGACGTATTGCTTCTCCAAAAAAACGGGTCTACATGTCTT
TGCAATCTGGCCTTCAACTCCGAAGAGAGCAAAAGAAGAATAGGTAGAGT
TGGAGGGATACATGCTGTTGTTAGCGCTATGAACAAGTTTGTTGGGGAGG
CAGACCTTCAAGCACGATGTTGCCTCGCTCTGAGGAACCTAACATGGGGA
CTGAGAGCGAACCAGTGGATAGCTGGACGGTGTCATGCTATGGAAGCTGT
CCTCCAATGTATGAGATTGATGAAGTCTGATATGAATATTCAATACCAGG
GATGCGTGGCATTAGCAAACTTATGTGACGAGGAAATAGAAAATCGCGGC
CGAGCTGCAGATCTTGGTGTGTACAAAATTGCTACAGAGCTAGTGAGAAA
GCATATGCAGAACGCGTCTCTGTGCGAACATGCTCTGACTGTTATTCGCA
ACATATGTATTCGCAGCGACCAAAACCAAAGGAATGTAGGCGGAGACGGT
GGAATCGATTTGGTGTTATCTTGCATGAAAGTGCACCGCTTTTGTAAGAG
AGTTGTTGAAAGAGGCTGCAATGTTCTGAGGCACTTGTTCTTTGACAAAA
GCAATAGACTGCGATTCGCAGAATGTAACGGGGTGGATGCTCTGGTGCGC
ATAATGAGGGATGGTGCCGAACATTCGGACGTTAGCGAAGCAGTGCTCTT
CGCAATTGGAAACGCCATTTACGATAATCTAGACAGCAAACGAGCCGTTG
GAAGGCTAGGAGGCATACCAGCCCTAGTCGAAATCATGTCGAATCACTTG
GACTCTGCTGCGATTCAGGAACACGCATGTCGCGCTCTGCGCAATCTAGC
GGACGCCGATGAGCTCAATCTGAGACTCATAATAGAATGTGGAGCAGTTG
ATGCTGTGTTGCTGGCTATGATGGGTTACCTGGACAACGGCAATATCCAA
GAGCAGGGATGTGCGATGCTGGTGAATATGACGGTGTTTGAGGAAGGCTT
GAGACAAATGAGGGTCCTTCAAGCCTCGCTTGTAGTGACAAGATCAAAGA
GCATGCATATTGACAAGCAAATGGTGCAGTGCCAGGCTGAAGCCTTGCTG
ACGCGGCTCAAGCATGGCTCACATGCCTCTGGGACATCGATTGCGCTTCC
CAAGAAGAAAATATCCAAGGCGGTTACATTGCGTAAAGCAGCGTCGCGTG
CTGCATTTGGTAAGCGGCCAAAATCTGAAGCCAAGAACCTTGTGAGCCGT
GCGAGTGATGATGCACCGTGCAATGGCAAGCTTGTGCAGCTGCTGGGAAG
TTCTGGCAGCACTTAG