Gcaud1586.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1586.t1
Unique Name	Gcaud1586.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_916_length_16160_cov_3.715041	contig	NODE_916_length_16160_cov_3.715041:5886..7040 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP06004
PFAMs	C2,Copine
Max annot lvl	3041\|Chlorophyta
Evalue	2.62e-05
EggNOG OGs	KOG1327@1\|root,KOG1327@2759\|Eukaryota,37MKV@33090\|Viridiplantae,34J60@3041\|Chlorophyta
Description	Copine
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1586	Gcaud1586	Gracilaria caudata M_176_S67 male	gene	NODE_916_length_16160_cov_3.715041 5886..7040 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1586.t1.start1	Gcaud1586.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_916_length_16160_cov_3.715041 5886..5888 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1586.t1.CDS1	Gcaud1586.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_916_length_16160_cov_3.715041 5886..7040 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1586.t1.exon1	Gcaud1586.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_916_length_16160_cov_3.715041 5886..7040 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1586.t1.stop1	Gcaud1586.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_916_length_16160_cov_3.715041 7038..7040 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1586.t1	Gcaud1586.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_916_length_16160_cov_3.715041 5886..7040 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+
coding sequence from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+

mRNA sequence

>Gcaud1586.t1 ID=Gcaud1586.t1|Name=Gcaud1586.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp
MADTSSSDSEGEARGKDKVAQTPSTELLGDPAVDSDDGEFDEAEKAPPRL
PSAYRAKPSVIEFSPVSNQDGETFNDEEEEILDPCGLSPRGVLSKGVPAI
IESLKFDAVELHVEGYETTRLEIFAPAECFAALLSEGSEPGTWEVTDKSE
TVRCAQHIRLLKKFRLRAATEIDRAEKVMVAFFDANTPSHLLQQTNALGY
DVFSVEELIESKELALQRQLKSDGWSFWGDAQVVLSLDFLKHVSKKEMIS
IEFGVDDEAPRRNRMFFVISRSLPQGAWSPIYKSEIRTRGEADKFEPVSI
PCQDFHGGDESKNFRLELHRWYKNGRTRPLGFMQTSVQKMKSLESNSSMY
WWPAEDGISSAKIIVLQALTSPREARFHLLLSTS*

spliced messenger RNA

>Gcaud1586.t1 ID=Gcaud1586.t1|Name=Gcaud1586.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATACCTCAAGCTCGGACTCTGAAGGCGAGGCAAGGGGAAAGGA
CAAAGTTGCCCAGACTCCAAGTACGGAATTACTCGGAGACCCAGCCGTGG
ACTCTGATGACGGAGAGTTTGACGAAGCAGAGAAAGCGCCTCCACGACTG
CCTTCCGCGTACAGGGCTAAACCGTCCGTGATAGAGTTTTCTCCCGTATC
TAATCAAGACGGGGAGACGTTCAATGACGAGGAGGAGGAGATTCTTGATC
CATGCGGCCTTTCTCCAAGAGGTGTCTTGAGTAAAGGAGTACCGGCTATA
ATTGAATCATTAAAGTTTGACGCTGTGGAACTCCATGTGGAAGGCTATGA
AACTACTCGACTGGAGATCTTTGCCCCGGCTGAATGCTTTGCTGCGTTGC
TTAGTGAGGGATCTGAACCAGGAACGTGGGAGGTTACAGATAAGAGCGAA
ACGGTGAGATGTGCACAACACATTAGGCTACTAAAGAAGTTCAGACTTCG
AGCGGCTACAGAAATAGACCGAGCAGAGAAGGTCATGGTTGCCTTCTTTG
ATGCGAACACGCCCTCCCATTTGCTACAACAGACAAACGCTCTGGGGTAT
GACGTATTTTCTGTGGAGGAACTTATTGAGTCAAAGGAACTGGCATTGCA
ACGACAGCTTAAAAGTGATGGATGGAGTTTTTGGGGCGATGCGCAAGTGG
TTTTGTCGCTCGATTTTCTCAAGCATGTATCGAAAAAGGAGATGATCTCC
ATTGAGTTTGGCGTCGACGACGAGGCACCACGGAGGAATCGGATGTTCTT
CGTGATTTCAAGGAGTCTACCACAAGGTGCATGGTCACCAATCTACAAGT
CAGAAATTCGGACTCGGGGTGAAGCGGACAAGTTCGAACCGGTTTCAATA
CCATGTCAAGATTTTCACGGCGGCGATGAGTCGAAGAACTTTCGGCTTGA
GCTTCATCGATGGTACAAGAATGGGAGAACGAGACCTTTGGGATTCATGC
AGACATCGGTTCAGAAAATGAAGAGCTTGGAGTCAAACAGTAGCATGTAC
TGGTGGCCTGCGGAGGACGGAATCAGTTCTGCGAAGATCATCGTTCTGCA
GGCGTTAACGTCACCACGCGAAGCTCGTTTTCACCTGTTGCTTTCGACCT
CGTGA

protein sequence of Gcaud1586.t1

>Gcaud1586.t1 ID=Gcaud1586.t1|Name=Gcaud1586.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=385bp
MADTSSSDSEGEARGKDKVAQTPSTELLGDPAVDSDDGEFDEAEKAPPRL
PSAYRAKPSVIEFSPVSNQDGETFNDEEEEILDPCGLSPRGVLSKGVPAI
IESLKFDAVELHVEGYETTRLEIFAPAECFAALLSEGSEPGTWEVTDKSE
TVRCAQHIRLLKKFRLRAATEIDRAEKVMVAFFDANTPSHLLQQTNALGY
DVFSVEELIESKELALQRQLKSDGWSFWGDAQVVLSLDFLKHVSKKEMIS
IEFGVDDEAPRRNRMFFVISRSLPQGAWSPIYKSEIRTRGEADKFEPVSI
PCQDFHGGDESKNFRLELHRWYKNGRTRPLGFMQTSVQKMKSLESNSSMY
WWPAEDGISSAKIIVLQALTSPREARFHLLLSTS*

mRNA from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1586.t1 ID=Gcaud1586.t1|Name=Gcaud1586.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+ (Gracilaria caudata M_176_S67 male)
ATGGCTGATACCTCAAGCTCGGACTCTGAAGGCGAGGCAAGGGGAAAGGA
CAAAGTTGCCCAGACTCCAAGTACGGAATTACTCGGAGACCCAGCCGTGG
ACTCTGATGACGGAGAGTTTGACGAAGCAGAGAAAGCGCCTCCACGACTG
CCTTCCGCGTACAGGGCTAAACCGTCCGTGATAGAGTTTTCTCCCGTATC
TAATCAAGACGGGGAGACGTTCAATGACGAGGAGGAGGAGATTCTTGATC
CATGCGGCCTTTCTCCAAGAGGTGTCTTGAGTAAAGGAGTACCGGCTATA
ATTGAATCATTAAAGTTTGACGCTGTGGAACTCCATGTGGAAGGCTATGA
AACTACTCGACTGGAGATCTTTGCCCCGGCTGAATGCTTTGCTGCGTTGC
TTAGTGAGGGATCTGAACCAGGAACGTGGGAGGTTACAGATAAGAGCGAA
ACGGTGAGATGTGCACAACACATTAGGCTACTAAAGAAGTTCAGACTTCG
AGCGGCTACAGAAATAGACCGAGCAGAGAAGGTCATGGTTGCCTTCTTTG
ATGCGAACACGCCCTCCCATTTGCTACAACAGACAAACGCTCTGGGGTAT
GACGTATTTTCTGTGGAGGAACTTATTGAGTCAAAGGAACTGGCATTGCA
ACGACAGCTTAAAAGTGATGGATGGAGTTTTTGGGGCGATGCGCAAGTGG
TTTTGTCGCTCGATTTTCTCAAGCATGTATCGAAAAAGGAGATGATCTCC
ATTGAGTTTGGCGTCGACGACGAGGCACCACGGAGGAATCGGATGTTCTT
CGTGATTTCAAGGAGTCTACCACAAGGTGCATGGTCACCAATCTACAAGT
CAGAAATTCGGACTCGGGGTGAAGCGGACAAGTTCGAACCGGTTTCAATA
CCATGTCAAGATTTTCACGGCGGCGATGAGTCGAAGAACTTTCGGCTTGA
GCTTCATCGATGGTACAAGAATGGGAGAACGAGACCTTTGGGATTCATGC
AGACATCGGTTCAGAAAATGAAGAGCTTGGAGTCAAACAGTAGCATGTAC
TGGTGGCCTGCGGAGGACGGAATCAGTTCTGCGAAGATCATCGTTCTGCA
GGCGTTAACGTCACCACGCGAAGCTCGTTTTCACCTGTTGCTTTCGACCT
CGTGA

Coding sequence (CDS) from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+

>Gcaud1586.t1 ID=Gcaud1586.t1|Name=Gcaud1586.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1155bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:5886..7040+ (Gracilaria caudata M_176_S67 male)
ATGGCTGATACCTCAAGCTCGGACTCTGAAGGCGAGGCAAGGGGAAAGGA
CAAAGTTGCCCAGACTCCAAGTACGGAATTACTCGGAGACCCAGCCGTGG
ACTCTGATGACGGAGAGTTTGACGAAGCAGAGAAAGCGCCTCCACGACTG
CCTTCCGCGTACAGGGCTAAACCGTCCGTGATAGAGTTTTCTCCCGTATC
TAATCAAGACGGGGAGACGTTCAATGACGAGGAGGAGGAGATTCTTGATC
CATGCGGCCTTTCTCCAAGAGGTGTCTTGAGTAAAGGAGTACCGGCTATA
ATTGAATCATTAAAGTTTGACGCTGTGGAACTCCATGTGGAAGGCTATGA
AACTACTCGACTGGAGATCTTTGCCCCGGCTGAATGCTTTGCTGCGTTGC
TTAGTGAGGGATCTGAACCAGGAACGTGGGAGGTTACAGATAAGAGCGAA
ACGGTGAGATGTGCACAACACATTAGGCTACTAAAGAAGTTCAGACTTCG
AGCGGCTACAGAAATAGACCGAGCAGAGAAGGTCATGGTTGCCTTCTTTG
ATGCGAACACGCCCTCCCATTTGCTACAACAGACAAACGCTCTGGGGTAT
GACGTATTTTCTGTGGAGGAACTTATTGAGTCAAAGGAACTGGCATTGCA
ACGACAGCTTAAAAGTGATGGATGGAGTTTTTGGGGCGATGCGCAAGTGG
TTTTGTCGCTCGATTTTCTCAAGCATGTATCGAAAAAGGAGATGATCTCC
ATTGAGTTTGGCGTCGACGACGAGGCACCACGGAGGAATCGGATGTTCTT
CGTGATTTCAAGGAGTCTACCACAAGGTGCATGGTCACCAATCTACAAGT
CAGAAATTCGGACTCGGGGTGAAGCGGACAAGTTCGAACCGGTTTCAATA
CCATGTCAAGATTTTCACGGCGGCGATGAGTCGAAGAACTTTCGGCTTGA
GCTTCATCGATGGTACAAGAATGGGAGAACGAGACCTTTGGGATTCATGC
AGACATCGGTTCAGAAAATGAAGAGCTTGGAGTCAAACAGTAGCATGTAC
TGGTGGCCTGCGGAGGACGGAATCAGTTCTGCGAAGATCATCGTTCTGCA
GGCGTTAACGTCACCACGCGAAGCTCGTTTTCACCTGTTGCTTTCGACCT
CGTGA