Gcaud1603.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1603.t1
Unique Name	Gcaud1603.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	468

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_909_length_16211_cov_4.635174	contig	NODE_909_length_16211_cov_4.635174:3714..5117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1603	Gcaud1603	Gracilaria caudata M_176_S67 male	gene	NODE_909_length_16211_cov_4.635174 3714..5117 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1603.t1.start1	Gcaud1603.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_909_length_16211_cov_4.635174 3714..3716 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1603.t1.CDS1	Gcaud1603.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_909_length_16211_cov_4.635174 3714..5117 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1603.t1.exon1	Gcaud1603.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_909_length_16211_cov_4.635174 3714..5117 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1603.t1.stop1	Gcaud1603.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_909_length_16211_cov_4.635174 5115..5117 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1603.t1	Gcaud1603.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_909_length_16211_cov_4.635174 3714..5117 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+
coding sequence from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+

mRNA sequence

>Gcaud1603.t1 ID=Gcaud1603.t1|Name=Gcaud1603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=468bp
MTQLLPKDEQPLVTVKDYRPSCHSSSSDAPESTDDEFDFEVDKPCPFTDV
PKKSRFGKLFFTRNAKGLWGERPIVTTVESPFRLRCWAISGPDELCDERV
EGEPFNMDDDVIVPMTGLSLLSSKRGVFHRRRRPKASSGKMSPLQKSHVK
VIPPPYPEPPNRSLTVTSRVTRSPGVDVNDMLNTEGRMVEDPPGLSDTSD
SESLLSVNYKPSTDSSKSTSINFCLRSEEDSSSEESQADPPSPERSSRLY
SEHSRMENIYDSSFLPATAVSNLAQSQAQVQSLTYQVEQLMSLANNLQDQ
ITACNREKIHLQQQIQVLQTTQCSSEESTSPQSSTTETSQETSPRRSSFS
KKCFGREEERLRMELLEEKQKSAGIQLENERLLGVIFRLKCEMDLEHCLH
ERFQKKAVSEQSGGRWQKIREVVRSSSGLWDSRDASKRAAYQRGWPFRRS
KSRKQKKTASSLDHSSP*

spliced messenger RNA

>Gcaud1603.t1 ID=Gcaud1603.t1|Name=Gcaud1603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACAACTATTGCCAAAGGATGAACAGCCTCTGGTGACTGTCAAGGA
TTACCGCCCGTCTTGTCACAGTTCAAGTAGCGATGCCCCAGAGAGCACAG
ATGATGAGTTCGACTTCGAGGTCGACAAGCCTTGCCCATTCACCGACGTT
CCCAAGAAATCTAGGTTTGGAAAACTCTTTTTCACGCGCAACGCAAAAGG
TTTGTGGGGGGAGAGGCCTATTGTCACTACCGTGGAAAGCCCCTTCAGGC
TTCGATGTTGGGCAATCAGCGGCCCAGATGAACTCTGCGACGAAAGAGTA
GAGGGAGAGCCGTTCAACATGGACGACGATGTCATTGTCCCAATGACCGG
CTTGAGTCTTCTTTCTTCTAAGCGGGGAGTTTTTCATCGACGTCGAAGAC
CCAAGGCGAGCTCTGGCAAAATGTCCCCGCTTCAAAAATCACACGTCAAG
GTTATTCCTCCACCTTACCCTGAACCCCCCAACCGCTCCCTGACTGTAAC
TTCGCGTGTCACAAGGTCTCCAGGCGTGGATGTCAACGACATGCTCAACA
CGGAAGGGCGAATGGTGGAAGATCCTCCTGGCCTGTCTGACACTTCAGAC
AGCGAATCATTGCTTTCTGTCAATTACAAGCCATCTACGGACAGCTCCAA
GTCAACATCAATTAATTTTTGTTTGCGGTCCGAAGAGGACAGCTCTTCGG
AAGAGTCACAAGCTGACCCACCTTCTCCCGAACGATCATCTAGATTATAT
TCAGAGCATTCGAGAATGGAGAACATCTATGACTCATCGTTTTTGCCAGC
AACTGCCGTCTCGAATCTGGCACAATCCCAAGCACAGGTACAGTCGCTGA
CATATCAAGTCGAGCAGTTGATGAGTCTGGCCAACAATCTTCAGGACCAA
ATAACTGCCTGCAACAGGGAAAAGATTCACCTGCAGCAGCAGATACAAGT
GTTGCAAACGACACAGTGTTCATCAGAAGAGTCAACCTCACCCCAAAGCT
CTACCACTGAAACCAGTCAAGAAACGTCACCAAGACGATCGAGTTTTTCG
AAGAAGTGTTTCGGCCGCGAAGAGGAGAGGTTGAGGATGGAGCTTTTGGA
GGAGAAGCAGAAAAGCGCGGGGATACAGCTTGAGAATGAGAGACTTCTTG
GGGTGATCTTCAGGCTCAAATGTGAAATGGATCTCGAGCACTGCCTACAC
GAAAGGTTCCAAAAGAAGGCTGTTTCTGAGCAGTCTGGAGGCAGATGGCA
AAAGATTAGAGAAGTTGTGAGATCTTCAAGTGGTTTATGGGATTCCAGGG
ATGCCAGCAAAAGAGCGGCGTACCAGCGGGGGTGGCCGTTCAGAAGGAGC
AAAAGTCGGAAACAAAAAAAGACTGCTTCGTCTTTGGATCACTCATCGCC
TTGA

protein sequence of Gcaud1603.t1

>Gcaud1603.t1 ID=Gcaud1603.t1|Name=Gcaud1603.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=468bp
MTQLLPKDEQPLVTVKDYRPSCHSSSSDAPESTDDEFDFEVDKPCPFTDV
PKKSRFGKLFFTRNAKGLWGERPIVTTVESPFRLRCWAISGPDELCDERV
EGEPFNMDDDVIVPMTGLSLLSSKRGVFHRRRRPKASSGKMSPLQKSHVK
VIPPPYPEPPNRSLTVTSRVTRSPGVDVNDMLNTEGRMVEDPPGLSDTSD
SESLLSVNYKPSTDSSKSTSINFCLRSEEDSSSEESQADPPSPERSSRLY
SEHSRMENIYDSSFLPATAVSNLAQSQAQVQSLTYQVEQLMSLANNLQDQ
ITACNREKIHLQQQIQVLQTTQCSSEESTSPQSSTTETSQETSPRRSSFS
KKCFGREEERLRMELLEEKQKSAGIQLENERLLGVIFRLKCEMDLEHCLH
ERFQKKAVSEQSGGRWQKIREVVRSSSGLWDSRDASKRAAYQRGWPFRRS
KSRKQKKTASSLDHSSP*

mRNA from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1603.t1 ID=Gcaud1603.t1|Name=Gcaud1603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+ (Gracilaria caudata M_176_S67 male)
ATGACACAACTATTGCCAAAGGATGAACAGCCTCTGGTGACTGTCAAGGA
TTACCGCCCGTCTTGTCACAGTTCAAGTAGCGATGCCCCAGAGAGCACAG
ATGATGAGTTCGACTTCGAGGTCGACAAGCCTTGCCCATTCACCGACGTT
CCCAAGAAATCTAGGTTTGGAAAACTCTTTTTCACGCGCAACGCAAAAGG
TTTGTGGGGGGAGAGGCCTATTGTCACTACCGTGGAAAGCCCCTTCAGGC
TTCGATGTTGGGCAATCAGCGGCCCAGATGAACTCTGCGACGAAAGAGTA
GAGGGAGAGCCGTTCAACATGGACGACGATGTCATTGTCCCAATGACCGG
CTTGAGTCTTCTTTCTTCTAAGCGGGGAGTTTTTCATCGACGTCGAAGAC
CCAAGGCGAGCTCTGGCAAAATGTCCCCGCTTCAAAAATCACACGTCAAG
GTTATTCCTCCACCTTACCCTGAACCCCCCAACCGCTCCCTGACTGTAAC
TTCGCGTGTCACAAGGTCTCCAGGCGTGGATGTCAACGACATGCTCAACA
CGGAAGGGCGAATGGTGGAAGATCCTCCTGGCCTGTCTGACACTTCAGAC
AGCGAATCATTGCTTTCTGTCAATTACAAGCCATCTACGGACAGCTCCAA
GTCAACATCAATTAATTTTTGTTTGCGGTCCGAAGAGGACAGCTCTTCGG
AAGAGTCACAAGCTGACCCACCTTCTCCCGAACGATCATCTAGATTATAT
TCAGAGCATTCGAGAATGGAGAACATCTATGACTCATCGTTTTTGCCAGC
AACTGCCGTCTCGAATCTGGCACAATCCCAAGCACAGGTACAGTCGCTGA
CATATCAAGTCGAGCAGTTGATGAGTCTGGCCAACAATCTTCAGGACCAA
ATAACTGCCTGCAACAGGGAAAAGATTCACCTGCAGCAGCAGATACAAGT
GTTGCAAACGACACAGTGTTCATCAGAAGAGTCAACCTCACCCCAAAGCT
CTACCACTGAAACCAGTCAAGAAACGTCACCAAGACGATCGAGTTTTTCG
AAGAAGTGTTTCGGCCGCGAAGAGGAGAGGTTGAGGATGGAGCTTTTGGA
GGAGAAGCAGAAAAGCGCGGGGATACAGCTTGAGAATGAGAGACTTCTTG
GGGTGATCTTCAGGCTCAAATGTGAAATGGATCTCGAGCACTGCCTACAC
GAAAGGTTCCAAAAGAAGGCTGTTTCTGAGCAGTCTGGAGGCAGATGGCA
AAAGATTAGAGAAGTTGTGAGATCTTCAAGTGGTTTATGGGATTCCAGGG
ATGCCAGCAAAAGAGCGGCGTACCAGCGGGGGTGGCCGTTCAGAAGGAGC
AAAAGTCGGAAACAAAAAAAGACTGCTTCGTCTTTGGATCACTCATCGCC
TTGA

Coding sequence (CDS) from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+

>Gcaud1603.t1 ID=Gcaud1603.t1|Name=Gcaud1603.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1404bp|location=Sequence derived from alignment at NODE_909_length_16211_cov_4.635174:3714..5117+ (Gracilaria caudata M_176_S67 male)
ATGACACAACTATTGCCAAAGGATGAACAGCCTCTGGTGACTGTCAAGGA
TTACCGCCCGTCTTGTCACAGTTCAAGTAGCGATGCCCCAGAGAGCACAG
ATGATGAGTTCGACTTCGAGGTCGACAAGCCTTGCCCATTCACCGACGTT
CCCAAGAAATCTAGGTTTGGAAAACTCTTTTTCACGCGCAACGCAAAAGG
TTTGTGGGGGGAGAGGCCTATTGTCACTACCGTGGAAAGCCCCTTCAGGC
TTCGATGTTGGGCAATCAGCGGCCCAGATGAACTCTGCGACGAAAGAGTA
GAGGGAGAGCCGTTCAACATGGACGACGATGTCATTGTCCCAATGACCGG
CTTGAGTCTTCTTTCTTCTAAGCGGGGAGTTTTTCATCGACGTCGAAGAC
CCAAGGCGAGCTCTGGCAAAATGTCCCCGCTTCAAAAATCACACGTCAAG
GTTATTCCTCCACCTTACCCTGAACCCCCCAACCGCTCCCTGACTGTAAC
TTCGCGTGTCACAAGGTCTCCAGGCGTGGATGTCAACGACATGCTCAACA
CGGAAGGGCGAATGGTGGAAGATCCTCCTGGCCTGTCTGACACTTCAGAC
AGCGAATCATTGCTTTCTGTCAATTACAAGCCATCTACGGACAGCTCCAA
GTCAACATCAATTAATTTTTGTTTGCGGTCCGAAGAGGACAGCTCTTCGG
AAGAGTCACAAGCTGACCCACCTTCTCCCGAACGATCATCTAGATTATAT
TCAGAGCATTCGAGAATGGAGAACATCTATGACTCATCGTTTTTGCCAGC
AACTGCCGTCTCGAATCTGGCACAATCCCAAGCACAGGTACAGTCGCTGA
CATATCAAGTCGAGCAGTTGATGAGTCTGGCCAACAATCTTCAGGACCAA
ATAACTGCCTGCAACAGGGAAAAGATTCACCTGCAGCAGCAGATACAAGT
GTTGCAAACGACACAGTGTTCATCAGAAGAGTCAACCTCACCCCAAAGCT
CTACCACTGAAACCAGTCAAGAAACGTCACCAAGACGATCGAGTTTTTCG
AAGAAGTGTTTCGGCCGCGAAGAGGAGAGGTTGAGGATGGAGCTTTTGGA
GGAGAAGCAGAAAAGCGCGGGGATACAGCTTGAGAATGAGAGACTTCTTG
GGGTGATCTTCAGGCTCAAATGTGAAATGGATCTCGAGCACTGCCTACAC
GAAAGGTTCCAAAAGAAGGCTGTTTCTGAGCAGTCTGGAGGCAGATGGCA
AAAGATTAGAGAAGTTGTGAGATCTTCAAGTGGTTTATGGGATTCCAGGG
ATGCCAGCAAAAGAGCGGCGTACCAGCGGGGGTGGCCGTTCAGAAGGAGC
AAAAGTCGGAAACAAAAAAAGACTGCTTCGTCTTTGGATCACTCATCGCC
TTGA