Gcaud2083.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2083.t1
Unique NameGcaud2083.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_906_length_16253_cov_4.271192contigNODE_906_length_16253_cov_4.271192:12261..12881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006677726.1
PFAMsMaf
Max annot lvl4751|Fungi
Evalue2.01e-50
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota,3A5UJ@33154|Opisthokonta,3PF9V@4751|Fungi
DescriptionMaf-like protein
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2083Gcaud2083Gracilaria caudata M_176_S67 malegeneNODE_906_length_16253_cov_4.271192 12261..12881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2083.t1.stop1Gcaud2083.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_906_length_16253_cov_4.271192 12261..12263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2083.t1.CDS1Gcaud2083.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_906_length_16253_cov_4.271192 12261..12881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2083.t1.exon1Gcaud2083.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_906_length_16253_cov_4.271192 12261..12881 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2083.t1.start1Gcaud2083.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_906_length_16253_cov_4.271192 12879..12881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2083.t1Gcaud2083.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_906_length_16253_cov_4.271192 12261..12881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2083.t1 ID=Gcaud2083.t1|Name=Gcaud2083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=207bp
MASGSEQPVVILGTSSATRHRLFRANFASDFKTMCPDIDEKAINAGYDDR
SRADPNVLTLKIANAKAEALQQQIPPNAILITSDQVLLYGGKIREKPQSV
EQCRQYLKSYARHPATTITAVVIYNSKTNHRISGVDTCTQHFRTIPDQVI
EQLLQKGDVLHSAGGITVEDELLKPYLSIRQGDLDSFMGLPIRLLRRLLS
EIGIRL*
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spliced messenger RNA

>Gcaud2083.t1 ID=Gcaud2083.t1|Name=Gcaud2083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=621bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:12261..12881- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCAGGTTCCGAACAGCCTGTCGTCATTCTCGGCACCTCCTCCGC
CACCCGCCACAGGCTGTTCCGAGCCAACTTTGCCTCAGACTTCAAAACAA
TGTGTCCCGACATTGACGAGAAGGCCATCAATGCCGGCTACGATGACCGC
AGTCGCGCTGATCCTAACGTTCTAACACTGAAGATTGCAAACGCAAAAGC
CGAAGCTTTGCAACAACAAATACCGCCAAACGCGATTCTAATCACTTCGG
ACCAGGTGCTCTTGTACGGCGGAAAAATTCGTGAGAAGCCACAGTCTGTT
GAGCAATGTCGCCAGTACCTCAAGAGTTACGCCAGACACCCGGCCACAAC
CATCACGGCTGTCGTCATTTACAACTCAAAAACTAATCACAGAATAAGTG
GAGTCGACACTTGTACCCAGCATTTCCGTACAATCCCCGACCAGGTGATT
GAGCAGCTATTGCAAAAAGGCGACGTGCTTCACAGTGCGGGCGGAATCAC
CGTCGAGGACGAACTGCTCAAACCATACCTGTCCATTCGACAAGGCGACT
TGGACAGTTTCATGGGGCTTCCCATTCGACTCCTGCGTCGACTTCTGTCG
GAGATAGGAATACGTCTCTGA
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protein sequence of Gcaud2083.t1

>Gcaud2083.t1 ID=Gcaud2083.t1|Name=Gcaud2083.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=207bp
MASGSEQPVVILGTSSATRHRLFRANFASDFKTMCPDIDEKAINAGYDDR
SRADPNVLTLKIANAKAEALQQQIPPNAILITSDQVLLYGGKIREKPQSV
EQCRQYLKSYARHPATTITAVVIYNSKTNHRISGVDTCTQHFRTIPDQVI
EQLLQKGDVLHSAGGITVEDELLKPYLSIRQGDLDSFMGLPIRLLRRLLS
EIGIRL*
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mRNA from alignment at NODE_906_length_16253_cov_4.271192:12261..12881-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2083.t1 ID=Gcaud2083.t1|Name=Gcaud2083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=621bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:12261..12881- (Gracilaria caudata M_176_S67 male)
ATGGCGTCAGGTTCCGAACAGCCTGTCGTCATTCTCGGCACCTCCTCCGC
CACCCGCCACAGGCTGTTCCGAGCCAACTTTGCCTCAGACTTCAAAACAA
TGTGTCCCGACATTGACGAGAAGGCCATCAATGCCGGCTACGATGACCGC
AGTCGCGCTGATCCTAACGTTCTAACACTGAAGATTGCAAACGCAAAAGC
CGAAGCTTTGCAACAACAAATACCGCCAAACGCGATTCTAATCACTTCGG
ACCAGGTGCTCTTGTACGGCGGAAAAATTCGTGAGAAGCCACAGTCTGTT
GAGCAATGTCGCCAGTACCTCAAGAGTTACGCCAGACACCCGGCCACAAC
CATCACGGCTGTCGTCATTTACAACTCAAAAACTAATCACAGAATAAGTG
GAGTCGACACTTGTACCCAGCATTTCCGTACAATCCCCGACCAGGTGATT
GAGCAGCTATTGCAAAAAGGCGACGTGCTTCACAGTGCGGGCGGAATCAC
CGTCGAGGACGAACTGCTCAAACCATACCTGTCCATTCGACAAGGCGACT
TGGACAGTTTCATGGGGCTTCCCATTCGACTCCTGCGTCGACTTCTGTCG
GAGATAGGAATACGTCTCTGA
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Coding sequence (CDS) from alignment at NODE_906_length_16253_cov_4.271192:12261..12881-

>Gcaud2083.t1 ID=Gcaud2083.t1|Name=Gcaud2083.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=621bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:12261..12881- (Gracilaria caudata M_176_S67 male)
ATGGCGTCAGGTTCCGAACAGCCTGTCGTCATTCTCGGCACCTCCTCCGC
CACCCGCCACAGGCTGTTCCGAGCCAACTTTGCCTCAGACTTCAAAACAA
TGTGTCCCGACATTGACGAGAAGGCCATCAATGCCGGCTACGATGACCGC
AGTCGCGCTGATCCTAACGTTCTAACACTGAAGATTGCAAACGCAAAAGC
CGAAGCTTTGCAACAACAAATACCGCCAAACGCGATTCTAATCACTTCGG
ACCAGGTGCTCTTGTACGGCGGAAAAATTCGTGAGAAGCCACAGTCTGTT
GAGCAATGTCGCCAGTACCTCAAGAGTTACGCCAGACACCCGGCCACAAC
CATCACGGCTGTCGTCATTTACAACTCAAAAACTAATCACAGAATAAGTG
GAGTCGACACTTGTACCCAGCATTTCCGTACAATCCCCGACCAGGTGATT
GAGCAGCTATTGCAAAAAGGCGACGTGCTTCACAGTGCGGGCGGAATCAC
CGTCGAGGACGAACTGCTCAAACCATACCTGTCCATTCGACAAGGCGACT
TGGACAGTTTCATGGGGCTTCCCATTCGACTCCTGCGTCGACTTCTGTCG
GAGATAGGAATACGTCTCTGA
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