Gcaud1.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1.t1
Unique NameGcaud1.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1023_length_14941_cov_4.694747contigNODE_1023_length_14941_cov_4.694747:305..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1Gcaud1Gracilaria caudata M_176_S67 malegeneNODE_1023_length_14941_cov_4.694747 305..984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1.t1Gcaud1.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1023_length_14941_cov_4.694747 305..984 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1.t1.start1Gcaud1.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1023_length_14941_cov_4.694747 305..307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1.t1.CDS1Gcaud1.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1023_length_14941_cov_4.694747 305..399 +
Gcaud1.t1.CDS2Gcaud1.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1023_length_14941_cov_4.694747 479..650 +
Gcaud1.t1.CDS3Gcaud1.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1023_length_14941_cov_4.694747 715..984 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1.t1.exon1Gcaud1.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1023_length_14941_cov_4.694747 305..399 +
Gcaud1.t1.exon2Gcaud1.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1023_length_14941_cov_4.694747 479..650 +
Gcaud1.t1.exon3Gcaud1.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1023_length_14941_cov_4.694747 715..984 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1.t1.intron1Gcaud1.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1023_length_14941_cov_4.694747 400..478 +
Gcaud1.t1.intron2Gcaud1.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1023_length_14941_cov_4.694747 651..714 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1.t1.stop1Gcaud1.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1023_length_14941_cov_4.694747 982..984 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1.t1 ID=Gcaud1.t1|Name=Gcaud1.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=179bp
MAKQMKKTAKGISSANPISEENTKVEIGVGHLNVHCGFGGDELIYQTEAN
ELDVESEDIKWSMANNELFKNANELVDIHTLIWTSSGTRGLVQPGVVELE
EIEEEENAVPHHDLSSLQLDQVAHALERQQHGDDREPELGKLSTCKKAEY
FVTKLEMTKVFDLKGWPPVDGSRNEWLR*
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spliced messenger RNA

>Gcaud1.t1 ID=Gcaud1.t1|Name=Gcaud1.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_1023_length_14941_cov_4.694747:305..984+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGCAGATGAAGAAGACGGCCAAGGGCATCTCGAGCGCGAATCC
CATCAGCGAGGAGAATACGAAAGTGGAAATTGGCGTCGGCCACTTAAATG
TTCACTGCGGATTTGGTGGGGATGAGCTTATATACCAGACCGAGGCCAAT
GAGTTGGATGTGGAATCCGAGGACATCAAATGGAGCATGGCCAACAATGA
GTTGTTCAAGAACGCTAACGAGCTCGTGGACATACACACACTCATATGGA
CATCCTCAGGAACCCGTGGCCTTGTCCAGCCCGGTGTCGTAGAGCTTGAA
GAAATTGAAGAAGAGGAAAACGCAGTACCACATCATGATCTCAGTTCTTT
ACAACTCGATCAAGTGGCACATGCTCTGGAGAGACAACAACATGGTGATG
ACCGAGAACCTGAGCTTGGCAAGTTGTCCACTTGTAAGAAGGCCGAATAC
TTCGTGACGAAGCTAGAAATGACCAAGGTGTTCGACTTGAAGGGGTGGCC
GCCTgttgatggctcacgtaacgagtggttacgttag
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protein sequence of Gcaud1.t1

>Gcaud1.t1 ID=Gcaud1.t1|Name=Gcaud1.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MAKQMKKTAKGISSANPISEENTKVEIGVGHLNVHCGFGGDELIYQTEAN
ELDVESEDIKWSMANNELFKNANELVDIHTLIWTSSGTRGLVQPGVVELE
EIEEEENAVPHHDLSSLQLDQVAHALERQQHGDDREPELGKLSTCKKAEY
FVTKLEMTKVFDLKGWPPVDGSRNEWLR*
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mRNA from alignment at NODE_1023_length_14941_cov_4.694747:305..984+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1.t1 ID=Gcaud1.t1|Name=Gcaud1.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=680bp|location=Sequence derived from alignment at NODE_1023_length_14941_cov_4.694747:305..984+ (Gracilaria caudata M_176_S67 male)
ATGGCCAAGCAGATGAAGAAGACGGCCAAGGGCATCTCGAGCGCGAATCC
CATCAGCGAGGAGAATACGAAAGTGGAAATTGGCGTCGGCCACTTGTATG
GGAGGTTGCACTACGAGTGCTTCGAATTCTTGGCCGAGATCTCGGAGGAG
TTCGGGAACGAGGACTTGTGGAAGAAATGTTCACTGCGGATTTGGTGGGG
ATGAGCTTATATACCAGACCGAGGCCAATGAGTTGGATGTGGAATCCGAG
GACATCAAATGGAGCATGGCCAACAATGAGTTGTTCAAGAACGCTAACGA
GCTCGTGGACATACACACACTCATATGGACATCCTCAGGAACCCGTGTAA
GTGCGACAATATGACGTTCGGGATGAAGTACTTGGACGTGTTGCTGGAGT
CAATCAACAGGGCCTTGTCCAGCCCGGTGTCGTAGAGCTTGAAGAAATTG
AAGAAGAGGAAAACGCAGTACCACATCATGATCTCAGTTCTTTACAACTC
GATCAAGTGGCACATGCTCTGGAGAGACAACAACATGGTGATGACCGAGA
ACCTGAGCTTGGCAAGTTGTCCACTTGTAAGAAGGCCGAATACTTCGTGA
CGAAGCTAGAAATGACCAAGGTGTTCGACTTGAAGGGGTGGCCGCCTgtt
gatggctcacgtaacgagtggttacgttag
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Coding sequence (CDS) from alignment at NODE_1023_length_14941_cov_4.694747:305..984+

>Gcaud1.t1 ID=Gcaud1.t1|Name=Gcaud1.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=537bp|location=Sequence derived from alignment at NODE_1023_length_14941_cov_4.694747:305..984+ (Gracilaria caudata M_176_S67 male)
ATGGCCAAGCAGATGAAGAAGACGGCCAAGGGCATCTCGAGCGCGAATCC
CATCAGCGAGGAGAATACGAAAGTGGAAATTGGCGTCGGCCACTTAAATG
TTCACTGCGGATTTGGTGGGGATGAGCTTATATACCAGACCGAGGCCAAT
GAGTTGGATGTGGAATCCGAGGACATCAAATGGAGCATGGCCAACAATGA
GTTGTTCAAGAACGCTAACGAGCTCGTGGACATACACACACTCATATGGA
CATCCTCAGGAACCCGTGGCCTTGTCCAGCCCGGTGTCGTAGAGCTTGAA
GAAATTGAAGAAGAGGAAAACGCAGTACCACATCATGATCTCAGTTCTTT
ACAACTCGATCAAGTGGCACATGCTCTGGAGAGACAACAACATGGTGATG
ACCGAGAACCTGAGCTTGGCAAGTTGTCCACTTGTAAGAAGGCCGAATAC
TTCGTGACGAAGCTAGAAATGACCAAGGTGTTCGACTTGAAGGGGTGGCC
GCCTgttgatggctcacgtaacgagtggttacgttag
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