Gcaud2123.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2123.t1
Unique Name	Gcaud2123.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	375

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1213_length_12574_cov_4.799648	contig	NODE_1213_length_12574_cov_4.799648:8757..10146 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2123	Gcaud2123	Gracilaria caudata M_176_S67 male	gene	NODE_1213_length_12574_cov_4.799648 8757..10146 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2123.t1	Gcaud2123.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1213_length_12574_cov_4.799648 8757..10146 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2123.t1.start1	Gcaud2123.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1213_length_12574_cov_4.799648 8757..8759 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2123.t1.CDS1	Gcaud2123.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1213_length_12574_cov_4.799648 8757..8826 +
Gcaud2123.t1.CDS2	Gcaud2123.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1213_length_12574_cov_4.799648 8876..8902 +
Gcaud2123.t1.CDS3	Gcaud2123.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1213_length_12574_cov_4.799648 9020..9229 +
Gcaud2123.t1.CDS4	Gcaud2123.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1213_length_12574_cov_4.799648 9329..10146 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2123.t1.exon1	Gcaud2123.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1213_length_12574_cov_4.799648 8757..8826 +
Gcaud2123.t1.exon2	Gcaud2123.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1213_length_12574_cov_4.799648 8876..8902 +
Gcaud2123.t1.exon3	Gcaud2123.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1213_length_12574_cov_4.799648 9020..9229 +
Gcaud2123.t1.exon4	Gcaud2123.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1213_length_12574_cov_4.799648 9329..10146 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2123.t1.intron1	Gcaud2123.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1213_length_12574_cov_4.799648 8827..8875 +
Gcaud2123.t1.intron2	Gcaud2123.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1213_length_12574_cov_4.799648 8903..9019 +
Gcaud2123.t1.intron3	Gcaud2123.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1213_length_12574_cov_4.799648 9230..9328 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2123.t1.stop1	Gcaud2123.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1213_length_12574_cov_4.799648 10144..10146 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+
coding sequence from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+

mRNA sequence

>Gcaud2123.t1 ID=Gcaud2123.t1|Name=Gcaud2123.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp
MRKFASFISKVTVLLQDRVKLDTGASVPRPYIKVVTYEDVNVILSELHEY
WPKWTNSPPSNIEGLTFDDCSGSGDCVAPRVCMSCPIPPCYCVKSPLFEN
YSFEPVPILHEPIEPPMGLLGLGLTGDRCFSHTDCRGTRSCLGKHTFVAE
VYNLTTCESSQFPCVCTPIHLIPCSTTSDCPDQDEVCASVLFTLNSVFSH
RPPEDSQGGDQEDDQGGDQTAVLDPICISSNLTDRDENVFTVSERANSSP
VSHIPSAKLQPRLFETENLSKLPERIIPELPPFSVPELSTFNAFTTHDLR
NEFIGGILSLIIVSQLHKIFQSLIYFVPGINEEAYSSYIIFSRLCSFRHI
SRLFTGTNRIPEVPRPLMIEVQNK*

spliced messenger RNA

>Gcaud2123.t1 ID=Gcaud2123.t1|Name=Gcaud2123.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAAGTTTGCATCATTTATCTCCAAGGTCACTGTATTACTGCAGGA
TAGGGTAAAGTTGGACACAGGTGCTTCGGTTCCACGCCCCTACATCAAAG
TTGTCACATATGAAGACGTGAATGTGATATTGTCAGAGCTACATGAATAT
TGGCCGAAGTGGACTAACTCGCCTCCTTCAAATATTGAAGGGCTCACGTT
TGACGACTGCTCCGGTTCTGGCGACTGTGTTGCACCCCGAGTCTGCATGA
GCTGTCCCATCCCACCATGCTACTGTGTTAAGTCTCCGCTGTTCGAAAAC
TATTCATTTGAACCAGTTCCAATCTTGCACGAACCAATCGAGCCGCCCAT
GGGACTTCTGGGTTTAGGATTGACCGGCGACCGTTGCTTTTCGCACACTG
ACTGCCGGGGCACGCGAAGCTGTCTTGGTAAACATACATTTGTCGCAGAG
GTCTATAACTTGACCACGTGTGAATCCTCCCAGTTCCCTTGTGTCTGTAC
TCCTATTCATCTTATTCCATGCTCCACAACATCGGACTGTCCGGATCAGG
ATGAAGTATGTGCATCAGTGCTCTTTACGTTGAACTCCGTTTTTTCTCAC
AGACCTCCAGAAGATAGTCAAGGAGGTGATCAAGAAGATGATCAAGGGGG
TGATCAAACAGCAGTGCTTGACCCGATCTGTATCTCTTCCAATTTGACTG
ACAGAGACGAGAATGTCTTCACTGTTTCAGAACGCGCTAACTCCTCTCCG
GTTTCTCATATCCCGAGTGCAAAACTTCAACCCAGACTGTTCGAAACGGA
AAACCTGTCCAAACTTCCAGAACGCATAATTCCGGAATTGCCCCCTTTCT
CTGTGCCCGAACTATCTACATTCAATGCATTCACAACCCATGACCTCAGA
AATGAGTTCATCGGTGGAATCCTTTCACTCATTATTGTCTCTCAACTACA
TAAGATCTTTCAAAGTCTAATCTATTTCGTACCCGGAATCAATGAAGAGG
CATATTCGTCCTATATCATTTTCTCCCGACTCTGTTCATTTCGTCATATT
TCAAGGCTTTTCACAGGCACGAACCGTATCCCCGAAGTACCGAGGCCACT
AATGATAGAAGTACAAAACAAGTGA

protein sequence of Gcaud2123.t1

>Gcaud2123.t1 ID=Gcaud2123.t1|Name=Gcaud2123.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=375bp
MRKFASFISKVTVLLQDRVKLDTGASVPRPYIKVVTYEDVNVILSELHEY
WPKWTNSPPSNIEGLTFDDCSGSGDCVAPRVCMSCPIPPCYCVKSPLFEN
YSFEPVPILHEPIEPPMGLLGLGLTGDRCFSHTDCRGTRSCLGKHTFVAE
VYNLTTCESSQFPCVCTPIHLIPCSTTSDCPDQDEVCASVLFTLNSVFSH
RPPEDSQGGDQEDDQGGDQTAVLDPICISSNLTDRDENVFTVSERANSSP
VSHIPSAKLQPRLFETENLSKLPERIIPELPPFSVPELSTFNAFTTHDLR
NEFIGGILSLIIVSQLHKIFQSLIYFVPGINEEAYSSYIIFSRLCSFRHI
SRLFTGTNRIPEVPRPLMIEVQNK*

mRNA from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2123.t1 ID=Gcaud2123.t1|Name=Gcaud2123.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1390bp|location=Sequence derived from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+ (Gracilaria caudata M_176_S67 male)
ATGAGGAAGTTTGCATCATTTATCTCCAAGGTCACTGTATTACTGCAGGA
TAGGGTAAAGTTGGACACAGGTGGTCTGTTTTGGACTCAAAAGCCAGTCT
AAACACCTTTCTGCGGTAGGTGCTTCGGTTCCACGCCCCTACATCAGTAC
GTTCGGAAGCTTAAGTCCTCACCTTCATACAATGAGCTCATTCATACTGT
TCATTCCTGGTCTGCTCGTGCTATCCTCTTTCCTCTTGCTGACAAACGCT
CAAAACCGTTCAGAAGTTGTCACATATGAAGACGTGAATGTGATATTGTC
AGAGCTACATGAATATTGGCCGAAGTGGACTAACTCGCCTCCTTCAAATA
TTGAAGGGCTCACGTTTGACGACTGCTCCGGTTCTGGCGACTGTGTTGCA
CCCCGAGTCTGCATGAGCTGTCCCATCCCACCATGCTACTGTGTTAAGTC
TCCGCTGTTCGAAAACTATTCATGTAAGTCTTCGATAGACTGCGACGAAG
GCGAGCATTGCTCATGGAATCCACAGATTGGACATACAGCGGGACGTTGC
GTCTCTAATCGAGTCAATTCAGTTGAACCAGTTCCAATCTTGCACGAACC
AATCGAGCCGCCCATGGGACTTCTGGGTTTAGGATTGACCGGCGACCGTT
GCTTTTCGCACACTGACTGCCGGGGCACGCGAAGCTGTCTTGGTAAACAT
ACATTTGTCGCAGAGGTCTATAACTTGACCACGTGTGAATCCTCCCAGTT
CCCTTGTGTCTGTACTCCTATTCATCTTATTCCATGCTCCACAACATCGG
ACTGTCCGGATCAGGATGAAGTATGTGCATCAGTGCTCTTTACGTTGAAC
TCCGTTTTTTCTCACAGACCTCCAGAAGATAGTCAAGGAGGTGATCAAGA
AGATGATCAAGGGGGTGATCAAACAGCAGTGCTTGACCCGATCTGTATCT
CTTCCAATTTGACTGACAGAGACGAGAATGTCTTCACTGTTTCAGAACGC
GCTAACTCCTCTCCGGTTTCTCATATCCCGAGTGCAAAACTTCAACCCAG
ACTGTTCGAAACGGAAAACCTGTCCAAACTTCCAGAACGCATAATTCCGG
AATTGCCCCCTTTCTCTGTGCCCGAACTATCTACATTCAATGCATTCACA
ACCCATGACCTCAGAAATGAGTTCATCGGTGGAATCCTTTCACTCATTAT
TGTCTCTCAACTACATAAGATCTTTCAAAGTCTAATCTATTTCGTACCCG
GAATCAATGAAGAGGCATATTCGTCCTATATCATTTTCTCCCGACTCTGT
TCATTTCGTCATATTTCAAGGCTTTTCACAGGCACGAACCGTATCCCCGA
AGTACCGAGGCCACTAATGATAGAAGTACAAAACAAGTGA

Coding sequence (CDS) from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+

>Gcaud2123.t1 ID=Gcaud2123.t1|Name=Gcaud2123.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1125bp|location=Sequence derived from alignment at NODE_1213_length_12574_cov_4.799648:8757..10146+ (Gracilaria caudata M_176_S67 male)
ATGAGGAAGTTTGCATCATTTATCTCCAAGGTCACTGTATTACTGCAGGA
TAGGGTAAAGTTGGACACAGGTGCTTCGGTTCCACGCCCCTACATCAAAG
TTGTCACATATGAAGACGTGAATGTGATATTGTCAGAGCTACATGAATAT
TGGCCGAAGTGGACTAACTCGCCTCCTTCAAATATTGAAGGGCTCACGTT
TGACGACTGCTCCGGTTCTGGCGACTGTGTTGCACCCCGAGTCTGCATGA
GCTGTCCCATCCCACCATGCTACTGTGTTAAGTCTCCGCTGTTCGAAAAC
TATTCATTTGAACCAGTTCCAATCTTGCACGAACCAATCGAGCCGCCCAT
GGGACTTCTGGGTTTAGGATTGACCGGCGACCGTTGCTTTTCGCACACTG
ACTGCCGGGGCACGCGAAGCTGTCTTGGTAAACATACATTTGTCGCAGAG
GTCTATAACTTGACCACGTGTGAATCCTCCCAGTTCCCTTGTGTCTGTAC
TCCTATTCATCTTATTCCATGCTCCACAACATCGGACTGTCCGGATCAGG
ATGAAGTATGTGCATCAGTGCTCTTTACGTTGAACTCCGTTTTTTCTCAC
AGACCTCCAGAAGATAGTCAAGGAGGTGATCAAGAAGATGATCAAGGGGG
TGATCAAACAGCAGTGCTTGACCCGATCTGTATCTCTTCCAATTTGACTG
ACAGAGACGAGAATGTCTTCACTGTTTCAGAACGCGCTAACTCCTCTCCG
GTTTCTCATATCCCGAGTGCAAAACTTCAACCCAGACTGTTCGAAACGGA
AAACCTGTCCAAACTTCCAGAACGCATAATTCCGGAATTGCCCCCTTTCT
CTGTGCCCGAACTATCTACATTCAATGCATTCACAACCCATGACCTCAGA
AATGAGTTCATCGGTGGAATCCTTTCACTCATTATTGTCTCTCAACTACA
TAAGATCTTTCAAAGTCTAATCTATTTCGTACCCGGAATCAATGAAGAGG
CATATTCGTCCTATATCATTTTCTCCCGACTCTGTTCATTTCGTCATATT
TCAAGGCTTTTCACAGGCACGAACCGTATCCCCGAAGTACCGAGGCCACT
AATGATAGAAGTACAAAACAAGTGA