Gcaud1449.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1449.t1
Unique NameGcaud1449.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1021_length_14946_cov_4.146752contigNODE_1021_length_14946_cov_4.146752:13318..13983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1449Gcaud1449Gracilaria caudata M_176_S67 malegeneNODE_1021_length_14946_cov_4.146752 13318..13983 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1449.t1.start1Gcaud1449.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1021_length_14946_cov_4.146752 13318..13320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1449.t1.CDS1Gcaud1449.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1021_length_14946_cov_4.146752 13318..13983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1449.t1.exon1Gcaud1449.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1021_length_14946_cov_4.146752 13318..13983 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1449.t1.stop1Gcaud1449.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1021_length_14946_cov_4.146752 13981..13983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1449.t1Gcaud1449.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1021_length_14946_cov_4.146752 13318..13983 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1449.t1 ID=Gcaud1449.t1|Name=Gcaud1449.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=222bp
MSGPPQSAAPTGAESLSSTDFRAMWNGASPTDDDFYRAAELIAMAHMRGQ
GTMFSRREHVPITHLDYFKPAPNAFVAELKQRDRRSAKEWEYYNAAGVWM
ELGISVIKDARRNAQLDHSGIVRLLRLAERSFEGALEIITMRGQYFRDLI
EKGTEIARQTAFLVEQGHDTVFSENYRSAREALTSRLEIEAAKELAKLQL
SQASNLSKQGSSSGSGGSSKK*
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spliced messenger RNA

>Gcaud1449.t1 ID=Gcaud1449.t1|Name=Gcaud1449.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=666bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:13318..13983+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGACCACCTCAGTCAGCAGCGCCGACCGGCGCAGAAAGCCTCAG
CTCTACAGACTTCCGTGCAATGTGGAACGGTGCTAGTCCAACCGATGACG
ACTTCTACAGAGCAGCCGAGCTGATAGCAATGGCTCACATGCGTGGGCAA
GGAACGATGTTTAGTCGAAGGGAGCACGTCCCTATTACGCATTTGGACTA
CTTCAAGCCCGCCCCCAACGCCTTCGTCGCCGAGCTCAAACAGCGGGACA
GAAGATCCGCAAAGGAGTGGGAATACTATAACGCGGCCGGTGTTTGGATG
GAACTCGGAATTTCGGTTATAAAGGATGCAAGACGTAACGCGCAGCTCGA
TCACTCAGGCATTGTACGTTTACTCCGACTTGCCGAACGGTCCTTTGAGG
GAGCACTAGAAATCATCACCATGAGGGGACAGTACTTCCGCGACTTGATT
GAAAAAGGGACCGAGATAGCCCGCCAGACGGCATTCCTTGTCGAGCAAGG
ACATGACACGGTGTTCTCAGAGAACTACCGTAGCGCCAGGGAGGCCCTCA
CCTCCCGACTTGAAATCGAGGCCGCCAAGGAATTGGCAAAGCTTCAGCTT
TCTCAAGCTTCTAATCTATCTAAGCAGGGGTCGTCCAGCGGCAGTGGCGG
CTCCTCGAAGAAATGA
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protein sequence of Gcaud1449.t1

>Gcaud1449.t1 ID=Gcaud1449.t1|Name=Gcaud1449.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=222bp
MSGPPQSAAPTGAESLSSTDFRAMWNGASPTDDDFYRAAELIAMAHMRGQ
GTMFSRREHVPITHLDYFKPAPNAFVAELKQRDRRSAKEWEYYNAAGVWM
ELGISVIKDARRNAQLDHSGIVRLLRLAERSFEGALEIITMRGQYFRDLI
EKGTEIARQTAFLVEQGHDTVFSENYRSAREALTSRLEIEAAKELAKLQL
SQASNLSKQGSSSGSGGSSKK*
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mRNA from alignment at NODE_1021_length_14946_cov_4.146752:13318..13983+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1449.t1 ID=Gcaud1449.t1|Name=Gcaud1449.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=666bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:13318..13983+ (Gracilaria caudata M_176_S67 male)
ATGTCCGGACCACCTCAGTCAGCAGCGCCGACCGGCGCAGAAAGCCTCAG
CTCTACAGACTTCCGTGCAATGTGGAACGGTGCTAGTCCAACCGATGACG
ACTTCTACAGAGCAGCCGAGCTGATAGCAATGGCTCACATGCGTGGGCAA
GGAACGATGTTTAGTCGAAGGGAGCACGTCCCTATTACGCATTTGGACTA
CTTCAAGCCCGCCCCCAACGCCTTCGTCGCCGAGCTCAAACAGCGGGACA
GAAGATCCGCAAAGGAGTGGGAATACTATAACGCGGCCGGTGTTTGGATG
GAACTCGGAATTTCGGTTATAAAGGATGCAAGACGTAACGCGCAGCTCGA
TCACTCAGGCATTGTACGTTTACTCCGACTTGCCGAACGGTCCTTTGAGG
GAGCACTAGAAATCATCACCATGAGGGGACAGTACTTCCGCGACTTGATT
GAAAAAGGGACCGAGATAGCCCGCCAGACGGCATTCCTTGTCGAGCAAGG
ACATGACACGGTGTTCTCAGAGAACTACCGTAGCGCCAGGGAGGCCCTCA
CCTCCCGACTTGAAATCGAGGCCGCCAAGGAATTGGCAAAGCTTCAGCTT
TCTCAAGCTTCTAATCTATCTAAGCAGGGGTCGTCCAGCGGCAGTGGCGG
CTCCTCGAAGAAATGA
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Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:13318..13983+

>Gcaud1449.t1 ID=Gcaud1449.t1|Name=Gcaud1449.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=666bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:13318..13983+ (Gracilaria caudata M_176_S67 male)
ATGTCCGGACCACCTCAGTCAGCAGCGCCGACCGGCGCAGAAAGCCTCAG
CTCTACAGACTTCCGTGCAATGTGGAACGGTGCTAGTCCAACCGATGACG
ACTTCTACAGAGCAGCCGAGCTGATAGCAATGGCTCACATGCGTGGGCAA
GGAACGATGTTTAGTCGAAGGGAGCACGTCCCTATTACGCATTTGGACTA
CTTCAAGCCCGCCCCCAACGCCTTCGTCGCCGAGCTCAAACAGCGGGACA
GAAGATCCGCAAAGGAGTGGGAATACTATAACGCGGCCGGTGTTTGGATG
GAACTCGGAATTTCGGTTATAAAGGATGCAAGACGTAACGCGCAGCTCGA
TCACTCAGGCATTGTACGTTTACTCCGACTTGCCGAACGGTCCTTTGAGG
GAGCACTAGAAATCATCACCATGAGGGGACAGTACTTCCGCGACTTGATT
GAAAAAGGGACCGAGATAGCCCGCCAGACGGCATTCCTTGTCGAGCAAGG
ACATGACACGGTGTTCTCAGAGAACTACCGTAGCGCCAGGGAGGCCCTCA
CCTCCCGACTTGAAATCGAGGCCGCCAAGGAATTGGCAAAGCTTCAGCTT
TCTCAAGCTTCTAATCTATCTAAGCAGGGGTCGTCCAGCGGCAGTGGCGG
CTCCTCGAAGAAATGA
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