Gcaud242.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud242.t1
Unique Name	Gcaud242.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	229

Homology

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BLAST of Gcaud242.t1 vs. uniprot
Match: A0A2V3J4J5_9FLOR (Transcription initiation factor TFIID subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4J5_9FLOR)

HSP 1 Score: 338 bits (868), Expect = 2.890e-104
Identity = 176/229 (76.86%), Postives = 191/229 (83.41%), Query Frame = 0

Query:    1 MTYSGRFLRPRLLEDDWLITGLAAHVAALGLQTILGRNWYTFRIWDIMEQLRNEPSLDLADSNLDRITDSSRATIRKRSHMIVYMIAKRIGGDVLKRALRDIVAEGRSAVIAAVSKTDAILTTPSKCSFNSTSQARTPFRRRLTDLINANLDSGQNHSVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVRNMVRQWASHPGIPRLQVAYHYNARKHTIELAIKQDSAGHG 229
            M+Y GRFLRPR LEDDWLI+GLAAHV+ALGLQTILGRNWY FRIWD ME LR EPSLDLA+ N+DR+ +SS A +RKRSHMIVYMIAKRIGGDVLKRALRDIVAEGR+A IAAVSK D IL+       NS+S     F R+LTDLINA+  S  N SVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVR+MVR WAS PGIPRLQVAYHYNARKH IEL IKQD   +G
Sbjct:  398 MSYFGRFLRPRTLEDDWLISGLAAHVSALGLQTILGRNWYIFRIWDTMESLRKEPSLDLANPNVDRVIESSLAALRKRSHMIVYMIAKRIGGDVLKRALRDIVAEGRNATIAAVSKIDTILSKHIVHVRNSSSSDGDHFHRKLTDLINADSSSNGNLSVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVRSMVRLWASSPGIPRLQVAYHYNARKHCIELVIKQDCLANG 626

[Close]

BLAST of Gcaud242.t1 vs. uniprot
Match: R7Q414_CHOCR (Transcription initiation factor TFIID subunit 2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q414_CHOCR)

HSP 1 Score: 241 bits (615), Expect = 1.110e-69
Identity = 125/230 (54.35%), Postives = 161/230 (70.00%), Query Frame = 0

Query:    1 MTYSGRFLRPRLLEDDWLITGLAAHVAALGLQTILGRNWYTFRIWDIMEQLRNEPSLDLADSNLDRITDSSRATIRKRSHMIVYMIAKRIGGDVLKRALRDIVAEGRSAVIAAVSKTDAILTTPSKCSFNSTSQARTPF---RRR---LTDLINANLDSGQNHSVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVRNMVRQWASHPGIPRLQVAYHYNARKHTIELAIKQD 224
            M+Y GRFLRPR  EDDWLI GLAAHV  LGL  ILGRNWY FRI D+M+ LR E S+DL+D  ++R+TD +  ++++RSH+IVYMI KRIG DVLKRALRDIVAEGRS + + V   D              ++ R P    RRR   L DL   + +   + SVV+SGFD+A+QGV VGPFLKR+R I GTD+R++VR WA+  G+PRL++ Y YN R+H +E A+KQ+
Sbjct:  400 MSYFGRFLRPRQAEDDWLICGLAAHVTTLGLGAILGRNWYRFRIMDLMDMLRQEKSVDLSDVKINRVTDETLDSVKRRSHVIVYMIEKRIGCDVLKRALRDIVAEGRSIIASLVRVFDTFQ--EKALEMLDDNRVRLPMTIERRRDRTLIDLTGKDPEQSGSSSVVSSGFDEALQGVSVGPFLKRLRAICGTDLRSLVRLWAASTGVPRLRIGYQYNPRRHCLEFAVKQE 627

The following BLAST results are available for this feature:

BLAST of Gcaud242.t1 vs. uniprot

BLAST of Gcaud242.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J4J5_9FLOR	2.890e-104	76.86	Transcription initiation factor TFIID subunit 2 n=...	[more]
R7Q414_CHOCR	1.110e-69	54.35	Transcription initiation factor TFIID subunit 2 n=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027268	Peptidase M4/M1, CTD superfamily	GENE3D	1.10.390.10	Neutral Protease Domain 2	coord: 2..122 e-value: 5.5E-5 score: 25.2
IPR037813	Transcription initiation factor TFIID subunit 2	PANTHER	PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	coord: 4..225
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..16
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 17..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 36..229

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_8859_length_688_cov_5.492462	contig	NODE_8859_length_688_cov_5.492462:2..688 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud242.t1	Gcaud242.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_8859_length_688_cov_5.492462 2..688 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud242.t1 ID=Gcaud242.t1|Name=Gcaud242.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MTYSGRFLRPRLLEDDWLITGLAAHVAALGLQTILGRNWYTFRIWDIMEQ
LRNEPSLDLADSNLDRITDSSRATIRKRSHMIVYMIAKRIGGDVLKRALR
DIVAEGRSAVIAAVSKTDAILTTPSKCSFNSTSQARTPFRRRLTDLINAN
LDSGQNHSVVTSGFDDAIQGVGVGPFLKRIRGIIGTDVRNMVRQWASHPG
IPRLQVAYHYNARKHTIELAIKQDSAGHG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027268	Peptidase_M4/M1_CTD_sf
IPR037813	TAF2