Gcaud7259.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7259.t1
Unique NameGcaud7259.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:46379..47491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN202CT
Preferred nameHPT1
PFAMsUbiA
Max annot lvl2759|Eukaryota
KEGG rclassRC01840,RC02895
KEGG koko:K09833
KEGG ReactionR07500,R10708
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
GOsGO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006766,GO:0006775,GO:0006810,GO:0008150,GO:0008152,GO:0008610,GO:0008643,GO:0009058,GO:0009110,GO:0009266,GO:0009507,GO:0009536,GO:0009628,GO:0009915,GO:0009987,GO:0010176,GO:0010189,GO:0010232,GO:0010233,GO:0010354,GO:0015766,GO:0015770,GO:0015772,GO:0016043,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019752,GO:0031347,GO:0032501,GO:0032787,GO:0033559,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046394,GO:0046483,GO:0048583,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0065007,GO:0071554,GO:0071555,GO:0071702,GO:0071704,GO:0071840,GO:0072330,GO:0080134,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Evalue1.9e-64
EggNOG OGsCOG0382@1|root,2R0I3@2759|Eukaryota
EC2.5.1.115,2.5.1.116
Descriptionhomogentisate phytyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7259Gcaud7259Gracilaria caudata M_176_S67 malegeneNODE_86_length_54060_cov_4.498935 46379..47491 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7259.t1.stop1Gcaud7259.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_86_length_54060_cov_4.498935 46379..46381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7259.t1.CDS1Gcaud7259.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 46379..47491 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7259.t1.exon1Gcaud7259.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 46379..47491 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7259.t1.start1Gcaud7259.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_86_length_54060_cov_4.498935 47489..47491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7259.t1Gcaud7259.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_86_length_54060_cov_4.498935 46379..47491 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7259.t1 ID=Gcaud7259.t1|Name=Gcaud7259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=371bp
MRPCTAFITSFTKAGCHRRLSSQGFYSRSCGVLRSQIPARTTLLRSSARD
ITPNSSRSDPTQDGVPPADLHSENPSLLRITRSLWAFSRPHTVYGTICSV
VSVSLLAAFNSPKPQPFPVFLTAFIPALLLNVFIVGLNQYFDIAIDRVNK
PYLPLASGALTKRDAVFIIMFSLISGLLFCLAPLATPALRIVLIGSTILG
TAYSVPPFRLKRFALLASILILTVRGLLVNLGFYLHSSAASMIPITIVFA
SAFFTFFGVVIALLKDVPDIRGDMIFGIRTFSVRLGAQNVFNCCVGILVA
MFLTASAFYYKMAQSMFGLAVAACHVIVAAVLWRRGRQVSTKVPKQIYEY
YMFSWKMFYMEYVLLPMIAL*
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spliced messenger RNA

>Gcaud7259.t1 ID=Gcaud7259.t1|Name=Gcaud7259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:46379..47491- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACCGTGCACAGCTTTCATTACCAGTTTCACAAAAGCTGGCTGTCA
TCGGAGATTGTCATCTCAAGGGTTCTATTCCCGAAGTTGTGGCGTGTTGC
GATCGCAAATCCCTGCTAGGACAACCTTACTAAGGTCAAGCGCGAGGGAC
ATAACCCCCAATTCCTCGCGTTCCGACCCCACACAAGATGGAGTCCCACC
AGCAGATCTACACTCTGAGAATCCCAGTCTGCTGCGAATCACGCGAAGTC
TGTGGGCGTTTTCCCGGCCGCATACCGTATATGGTACTATCTGTTCCGTT
GTTTCCGTGTCCCTTCTCGCCGCTTTCAATTCCCCCAAACCACAACCATT
CCCAGTTTTTCTTACGGCTTTCATTCCAGCACTGCTTCTAAACGTTTTTA
TCGTGGGTCTCAACCAATATTTTGACATTGCTATCGATCGTGTCAACAAA
CCATACTTGCCTCTCGCTTCAGGGGCACTCACAAAGAGAGACGCCGTATT
CATCATAATGTTCTCGCTCATATCGGGCCTGTTGTTTTGCCTTGCACCAC
TTGCGACTCCGGCCCTACGCATAGTTCTCATCGGATCTACTATACTAGGG
ACCGCGTACTCTGTACCACCATTCCGACTGAAACGCTTCGCATTATTGGC
CTCCATCTTGATTCTGACGGTTCGTGGTCTGCTGGTGAATCTCGGGTTCT
ATTTGCATAGTTCAGCGGCGAGTATGATACCCATTACGATTGTGTTCGCT
TCGGCGTTCTTTACTTTTTTTGGAGTAGTTATTGCGCTATTGAAGGATGT
CCCAGACATTCGTGGTGACATGATATTTGGAATAAGAACCTTCTCGGTGC
GCCTAGGGGCACAGAATGTGTTCAACTGCTGTGTGGGAATCTTGGTTGCA
ATGTTTCTGACGGCGTCCGCATTCTATTACAAAATGGCACAATCTATGTT
TGGTCTTGCTGTGGCAGCTTGCCATGTCATCGTAGCAGCAGTTTTGTGGC
GCAGGGGTAGACAGGTTTCAACGAAGGTACCAAAACAGATCTATGAGTAC
TACATGTTCTCATGGAAAATGTTTTACATGGAATATGTGTTACTTCCCAT
GATAGCTTTATGA
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protein sequence of Gcaud7259.t1

>Gcaud7259.t1 ID=Gcaud7259.t1|Name=Gcaud7259.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=371bp
MRPCTAFITSFTKAGCHRRLSSQGFYSRSCGVLRSQIPARTTLLRSSARD
ITPNSSRSDPTQDGVPPADLHSENPSLLRITRSLWAFSRPHTVYGTICSV
VSVSLLAAFNSPKPQPFPVFLTAFIPALLLNVFIVGLNQYFDIAIDRVNK
PYLPLASGALTKRDAVFIIMFSLISGLLFCLAPLATPALRIVLIGSTILG
TAYSVPPFRLKRFALLASILILTVRGLLVNLGFYLHSSAASMIPITIVFA
SAFFTFFGVVIALLKDVPDIRGDMIFGIRTFSVRLGAQNVFNCCVGILVA
MFLTASAFYYKMAQSMFGLAVAACHVIVAAVLWRRGRQVSTKVPKQIYEY
YMFSWKMFYMEYVLLPMIAL*
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mRNA from alignment at NODE_86_length_54060_cov_4.498935:46379..47491-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7259.t1 ID=Gcaud7259.t1|Name=Gcaud7259.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:46379..47491- (Gracilaria caudata M_176_S67 male)
ATGCGACCGTGCACAGCTTTCATTACCAGTTTCACAAAAGCTGGCTGTCA
TCGGAGATTGTCATCTCAAGGGTTCTATTCCCGAAGTTGTGGCGTGTTGC
GATCGCAAATCCCTGCTAGGACAACCTTACTAAGGTCAAGCGCGAGGGAC
ATAACCCCCAATTCCTCGCGTTCCGACCCCACACAAGATGGAGTCCCACC
AGCAGATCTACACTCTGAGAATCCCAGTCTGCTGCGAATCACGCGAAGTC
TGTGGGCGTTTTCCCGGCCGCATACCGTATATGGTACTATCTGTTCCGTT
GTTTCCGTGTCCCTTCTCGCCGCTTTCAATTCCCCCAAACCACAACCATT
CCCAGTTTTTCTTACGGCTTTCATTCCAGCACTGCTTCTAAACGTTTTTA
TCGTGGGTCTCAACCAATATTTTGACATTGCTATCGATCGTGTCAACAAA
CCATACTTGCCTCTCGCTTCAGGGGCACTCACAAAGAGAGACGCCGTATT
CATCATAATGTTCTCGCTCATATCGGGCCTGTTGTTTTGCCTTGCACCAC
TTGCGACTCCGGCCCTACGCATAGTTCTCATCGGATCTACTATACTAGGG
ACCGCGTACTCTGTACCACCATTCCGACTGAAACGCTTCGCATTATTGGC
CTCCATCTTGATTCTGACGGTTCGTGGTCTGCTGGTGAATCTCGGGTTCT
ATTTGCATAGTTCAGCGGCGAGTATGATACCCATTACGATTGTGTTCGCT
TCGGCGTTCTTTACTTTTTTTGGAGTAGTTATTGCGCTATTGAAGGATGT
CCCAGACATTCGTGGTGACATGATATTTGGAATAAGAACCTTCTCGGTGC
GCCTAGGGGCACAGAATGTGTTCAACTGCTGTGTGGGAATCTTGGTTGCA
ATGTTTCTGACGGCGTCCGCATTCTATTACAAAATGGCACAATCTATGTT
TGGTCTTGCTGTGGCAGCTTGCCATGTCATCGTAGCAGCAGTTTTGTGGC
GCAGGGGTAGACAGGTTTCAACGAAGGTACCAAAACAGATCTATGAGTAC
TACATGTTCTCATGGAAAATGTTTTACATGGAATATGTGTTACTTCCCAT
GATAGCTTTATGA
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Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:46379..47491-

>Gcaud7259.t1 ID=Gcaud7259.t1|Name=Gcaud7259.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1113bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:46379..47491- (Gracilaria caudata M_176_S67 male)
ATGCGACCGTGCACAGCTTTCATTACCAGTTTCACAAAAGCTGGCTGTCA
TCGGAGATTGTCATCTCAAGGGTTCTATTCCCGAAGTTGTGGCGTGTTGC
GATCGCAAATCCCTGCTAGGACAACCTTACTAAGGTCAAGCGCGAGGGAC
ATAACCCCCAATTCCTCGCGTTCCGACCCCACACAAGATGGAGTCCCACC
AGCAGATCTACACTCTGAGAATCCCAGTCTGCTGCGAATCACGCGAAGTC
TGTGGGCGTTTTCCCGGCCGCATACCGTATATGGTACTATCTGTTCCGTT
GTTTCCGTGTCCCTTCTCGCCGCTTTCAATTCCCCCAAACCACAACCATT
CCCAGTTTTTCTTACGGCTTTCATTCCAGCACTGCTTCTAAACGTTTTTA
TCGTGGGTCTCAACCAATATTTTGACATTGCTATCGATCGTGTCAACAAA
CCATACTTGCCTCTCGCTTCAGGGGCACTCACAAAGAGAGACGCCGTATT
CATCATAATGTTCTCGCTCATATCGGGCCTGTTGTTTTGCCTTGCACCAC
TTGCGACTCCGGCCCTACGCATAGTTCTCATCGGATCTACTATACTAGGG
ACCGCGTACTCTGTACCACCATTCCGACTGAAACGCTTCGCATTATTGGC
CTCCATCTTGATTCTGACGGTTCGTGGTCTGCTGGTGAATCTCGGGTTCT
ATTTGCATAGTTCAGCGGCGAGTATGATACCCATTACGATTGTGTTCGCT
TCGGCGTTCTTTACTTTTTTTGGAGTAGTTATTGCGCTATTGAAGGATGT
CCCAGACATTCGTGGTGACATGATATTTGGAATAAGAACCTTCTCGGTGC
GCCTAGGGGCACAGAATGTGTTCAACTGCTGTGTGGGAATCTTGGTTGCA
ATGTTTCTGACGGCGTCCGCATTCTATTACAAAATGGCACAATCTATGTT
TGGTCTTGCTGTGGCAGCTTGCCATGTCATCGTAGCAGCAGTTTTGTGGC
GCAGGGGTAGACAGGTTTCAACGAAGGTACCAAAACAGATCTATGAGTAC
TACATGTTCTCATGGAAAATGTTTTACATGGAATATGTGTTACTTCCCAT
GATAGCTTTATGA
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