Gcaud3645.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3645.t1
Unique NameGcaud3645.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_120_length_47600_cov_4.363763contigNODE_120_length_47600_cov_4.363763:29859..30472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3645Gcaud3645Gracilaria caudata M_176_S67 malegeneNODE_120_length_47600_cov_4.363763 29859..30472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3645.t1Gcaud3645.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_120_length_47600_cov_4.363763 29859..30472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3645.t1.stop1Gcaud3645.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_120_length_47600_cov_4.363763 29859..29861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3645.t1.CDS1Gcaud3645.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_120_length_47600_cov_4.363763 29859..30279 -
Gcaud3645.t1.CDS2Gcaud3645.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_120_length_47600_cov_4.363763 30444..30472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3645.t1.exon1Gcaud3645.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_120_length_47600_cov_4.363763 29859..30279 -
Gcaud3645.t1.exon2Gcaud3645.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_120_length_47600_cov_4.363763 30444..30472 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3645.t1.intron1Gcaud3645.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_120_length_47600_cov_4.363763 30280..30443 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3645.t1.start1Gcaud3645.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_120_length_47600_cov_4.363763 30470..30472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3645.t1 ID=Gcaud3645.t1|Name=Gcaud3645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=150bp
MFTDSPIFKARSCDGTDGQSFPQDNVIRWRSGMFREAVDQFSVVFESAAD
GRLSFVALDDDFESQSESGAIRMIALNVTDEIEAYVRETGTALCAEDVVC
DDGGLGAWIIFAIAAGSIAVVVCAIVVALLFRKKKSRSRVVANVDSDTP*
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spliced messenger RNA

>Gcaud3645.t1 ID=Gcaud3645.t1|Name=Gcaud3645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:29859..30472- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACAGACTCGCCGATATTCAAAGCTAGGAGCTGTGATGGTACGGA
TGGACAATCATTTCCGCAGGACAATGTGATTCGATGGCGCTCGGGTATGT
TTCGAGAAGCAGTGGATCAATTCAGCGTGGTGTTTGAATCGGCGGCCGAC
GGACGGCTGAGTTTCGTGGCACTTGACGATGATTTCGAGTCGCAGAGCGA
ATCGGGCGCCATTCGTATGATTGCGCTCAATGTGACGGATGAGATTGAGG
CGTACGTGAGGGAGACGGGCACAGCGCTGTGCGCTGAAGATGTGGTGTGT
GATGACGGTGGGTTGGGAGCGTGGATCATATTTGCGATTGCTGCTGGATC
GATTGCTGTGGTGGTGTGCGCGATTGTTGTGGCGCTGCTGTTTAGGAAGA
AAAAGAGTCGATCTCGAGTGGTGGCGAATGTGGACTCCGACACGCCATGA
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protein sequence of Gcaud3645.t1

>Gcaud3645.t1 ID=Gcaud3645.t1|Name=Gcaud3645.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=150bp
MFTDSPIFKARSCDGTDGQSFPQDNVIRWRSGMFREAVDQFSVVFESAAD
GRLSFVALDDDFESQSESGAIRMIALNVTDEIEAYVRETGTALCAEDVVC
DDGGLGAWIIFAIAAGSIAVVVCAIVVALLFRKKKSRSRVVANVDSDTP*
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mRNA from alignment at NODE_120_length_47600_cov_4.363763:29859..30472-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3645.t1 ID=Gcaud3645.t1|Name=Gcaud3645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=614bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:29859..30472- (Gracilaria caudata M_176_S67 male)
ATGTTTACAGACTCGCCGATATTCAAAGCGTAAGTAATGTGCGAGTGTTG
CTGAACAATAGCCGAATTCGAAATTCACTTTTTGAGGAAGACGATGAGAA
CAGCGCTACCATAGAGTTTGAAACAGAAGCTTCAACATCAAACAGTTCGT
ACTCTATCATATACAGCTTGTCTAACGGTGCGTTACGGTTTAGTAGGAGC
TGTGATGGTACGGATGGACAATCATTTCCGCAGGACAATGTGATTCGATG
GCGCTCGGGTATGTTTCGAGAAGCAGTGGATCAATTCAGCGTGGTGTTTG
AATCGGCGGCCGACGGACGGCTGAGTTTCGTGGCACTTGACGATGATTTC
GAGTCGCAGAGCGAATCGGGCGCCATTCGTATGATTGCGCTCAATGTGAC
GGATGAGATTGAGGCGTACGTGAGGGAGACGGGCACAGCGCTGTGCGCTG
AAGATGTGGTGTGTGATGACGGTGGGTTGGGAGCGTGGATCATATTTGCG
ATTGCTGCTGGATCGATTGCTGTGGTGGTGTGCGCGATTGTTGTGGCGCT
GCTGTTTAGGAAGAAAAAGAGTCGATCTCGAGTGGTGGCGAATGTGGACT
CCGACACGCCATGA
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Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:29859..30472-

>Gcaud3645.t1 ID=Gcaud3645.t1|Name=Gcaud3645.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=450bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:29859..30472- (Gracilaria caudata M_176_S67 male)
ATGTTTACAGACTCGCCGATATTCAAAGCTAGGAGCTGTGATGGTACGGA
TGGACAATCATTTCCGCAGGACAATGTGATTCGATGGCGCTCGGGTATGT
TTCGAGAAGCAGTGGATCAATTCAGCGTGGTGTTTGAATCGGCGGCCGAC
GGACGGCTGAGTTTCGTGGCACTTGACGATGATTTCGAGTCGCAGAGCGA
ATCGGGCGCCATTCGTATGATTGCGCTCAATGTGACGGATGAGATTGAGG
CGTACGTGAGGGAGACGGGCACAGCGCTGTGCGCTGAAGATGTGGTGTGT
GATGACGGTGGGTTGGGAGCGTGGATCATATTTGCGATTGCTGCTGGATC
GATTGCTGTGGTGGTGTGCGCGATTGTTGTGGCGCTGCTGTTTAGGAAGA
AAAAGAGTCGATCTCGAGTGGTGGCGAATGTGGACTCCGACACGCCATGA
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