Gcaud7261.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7261.t1
Unique NameGcaud7261.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length67
Homology
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BLAST of Gcaud7261.t1 vs. uniprot
Match: A0A2V3IYG4_9FLOR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYG4_9FLOR)

HSP 1 Score: 108 bits (270), Expect = 8.360e-30
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0 
Query:    1 MAWYEAMPPLVIITFALGAMGSLQAVVHRAFNDGKNKKVQRDRFNYLMDKRDERIKEEKDTAPAS 65
            MAWYEAMPPLVIIT ALGAMGSLQA+VHRAFNDGKNKKVQ+D FN+LMDKRDERIKEE+  A +S
Sbjct:    1 MAWYEAMPPLVIITAALGAMGSLQALVHRAFNDGKNKKVQQDHFNHLMDKRDERIKEEEANATSS 65
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BLAST of Gcaud7261.t1 vs. uniprot
Match: R7QRR7_CHOCR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRR7_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 3.300e-22
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 
Query:    1 MAWYEAMPPLVIITFALGAMGSLQAVVHRAFNDGKNKKVQRDRFNYLMDKRDERIKEE 58
            M W EAMPPL+IIT AL AMGSLQA VHR FNDGKNKKVQRD F++LMDKRD+RI+EE
Sbjct:  115 MTWLEAMPPLIIITGALAAMGSLQAAVHRGFNDGKNKKVQRDYFSHLMDKRDKRIREE 172
The following BLAST results are available for this feature:
BLAST of Gcaud7261.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IYG4_9FLOR8.360e-3084.62NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
R7QRR7_CHOCR3.300e-2279.31NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017384NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1PFAMPF15879MWFEcoord: 3..55
e-value: 2.2E-14
score: 53.3
IPR017384NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1PANTHERPTHR17098NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNITcoord: 2..59
NoneNo IPR availablePANTHERPTHR17098:SF2NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 1coord: 2..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:49519..49787 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1Gcaud7261.t1Gracilaria caudata M_176_S67 malemRNANODE_86_length_54060_cov_4.498935 49519..49787 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7261.t1 ID=Gcaud7261.t1|Name=Gcaud7261.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=67bp
MAWYEAMPPLVIITFALGAMGSLQAVVHRAFNDGKNKKVQRDRFNYLMDK
RDERIKEEKDTAPASQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017384NADH_Ub_cplx-1_asu_su-1