Gcaud7261.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7261.t1
Unique NameGcaud7261.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:49519..49787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002503770.1
PFAMsMWFE
Max annot lvl2759|Eukaryota
KEGG koko:K03945
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Evalue1.21e-06
EggNOG OGs2E75Z@1|root,2SDTB@2759|Eukaryota
DescriptionNADH-ubiquinone oxidoreductase MWFE subunit
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7261Gcaud7261Gracilaria caudata M_176_S67 malegeneNODE_86_length_54060_cov_4.498935 49519..49787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1Gcaud7261.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_86_length_54060_cov_4.498935 49519..49787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1.start1Gcaud7261.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_86_length_54060_cov_4.498935 49519..49521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1.CDS1Gcaud7261.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 49519..49623 +
Gcaud7261.t1.CDS2Gcaud7261.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 49692..49787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1.exon1Gcaud7261.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 49519..49623 +
Gcaud7261.t1.exon2Gcaud7261.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 49692..49787 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1.intron1Gcaud7261.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_86_length_54060_cov_4.498935 49624..49691 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7261.t1.stop1Gcaud7261.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_86_length_54060_cov_4.498935 49785..49787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7261.t1 ID=Gcaud7261.t1|Name=Gcaud7261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=67bp
MAWYEAMPPLVIITFALGAMGSLQAVVHRAFNDGKNKKVQRDRFNYLMDK
RDERIKEEKDTAPASQ*
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spliced messenger RNA

>Gcaud7261.t1 ID=Gcaud7261.t1|Name=Gcaud7261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=201bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:49519..49787+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGTACGAAGCAATGCCACCTTTGGTGATTATCACTTTTGCCCT
CGGGGCGATGGGTTCCTTGCAGGCCGTAGTTCACCGTGCTTTCAATGACG
GGAAGAACAAGAAGGTGCAACGCGACCGCTTCAATTATCTTATGGACAAG
CGAGATGAGCGAATTAAGGAAGAAAAGGACACGGCACCAGCATCTCAGTA
A
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protein sequence of Gcaud7261.t1

>Gcaud7261.t1 ID=Gcaud7261.t1|Name=Gcaud7261.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=67bp
MAWYEAMPPLVIITFALGAMGSLQAVVHRAFNDGKNKKVQRDRFNYLMDK
RDERIKEEKDTAPASQ*
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mRNA from alignment at NODE_86_length_54060_cov_4.498935:49519..49787+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7261.t1 ID=Gcaud7261.t1|Name=Gcaud7261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=269bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:49519..49787+ (Gracilaria caudata M_176_S67 male)
ATGGCGTGGTACGAAGCAATGCCACCTTTGGTGATTATCACTTTTGCCCT
CGGGGCGATGGGTTCCTTGCAGGCCGTAGTTCACCGTGCTTTCAATGACG
GGAAGGTACGTTGTTTCCTTTTTCGTTATAGCATATTTGCTAATAGATTA
CTCACATCCCTCGCTCGTCACAGAACAAGAAGGTGCAACGCGACCGCTTC
AATTATCTTATGGACAAGCGAGATGAGCGAATTAAGGAAGAAAAGGACAC
GGCACCAGCATCTCAGTAA
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Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:49519..49787+

>Gcaud7261.t1 ID=Gcaud7261.t1|Name=Gcaud7261.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=201bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:49519..49787+ (Gracilaria caudata M_176_S67 male)
ATGGCGTGGTACGAAGCAATGCCACCTTTGGTGATTATCACTTTTGCCCT
CGGGGCGATGGGTTCCTTGCAGGCCGTAGTTCACCGTGCTTTCAATGACG
GGAAGAACAAGAAGGTGCAACGCGACCGCTTCAATTATCTTATGGACAAG
CGAGATGAGCGAATTAAGGAAGAAAAGGACACGGCACCAGCATCTCAGTA
A
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