Gcaud777.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud777.t1
Unique NameGcaud777.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_864_length_16904_cov_4.610361contigNODE_864_length_16904_cov_4.610361:8920..9471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud777Gcaud777Gracilaria caudata M_176_S67 malegeneNODE_864_length_16904_cov_4.610361 8920..9471 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud777.t1.stop1Gcaud777.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_864_length_16904_cov_4.610361 8920..8922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud777.t1.CDS1Gcaud777.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_864_length_16904_cov_4.610361 8920..9471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud777.t1.exon1Gcaud777.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_864_length_16904_cov_4.610361 8920..9471 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud777.t1.start1Gcaud777.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_864_length_16904_cov_4.610361 9469..9471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud777.t1Gcaud777.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_864_length_16904_cov_4.610361 8920..9471 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud777.t1 ID=Gcaud777.t1|Name=Gcaud777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=184bp
MNDSPDQHASQDAGPSSSAGSSASILIVAWNTAKLTTRDFGAVVEEINST
KVVGQSSTFEREPYVPVAPIGYFRSPAHASLTSLKSKDLRSAKEWEYANA
AGVSTELAIAALKIAKSEGGSFDHTVRKLKLVEKVMKATLEVLSMRCQYF
REIVELGTETALDISFLDGRGRDGVFSESYPAA*
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spliced messenger RNA

>Gcaud777.t1 ID=Gcaud777.t1|Name=Gcaud777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=552bp|location=Sequence derived from alignment at NODE_864_length_16904_cov_4.610361:8920..9471- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATTCTCCTGACCAACACGCGTCTCAAGACGCCGGACCGTCGAG
CAGTGCAGGGTCTAGCGCTTCAATTCTTATAGTAGCGTGGAATACAGCTA
AACTCACTACTCGAGACTTTGGAGCGGTGGTTGAGGAGATCAACTCAACC
AAGGTCGTTGGTCAAAGCAGCACGTTCGAGCGTGAGCCGTATGTGCCTGT
CGCTCCCATTGGATATTTCAGATCTCCCGCTCATGCCTCTCTCACAAGTC
TCAAGTCCAAGGATCTGCGCTCTGCGAAAGAGTGGGAGTACGCTAACGCC
GCTGGCGTCTCGACGGAGTTAGCGATAGCGGCGCTGAAGATAGCTAAAAG
TGAAGGGGGCTCGTTTGACCATACGGTGCGCAAGCTCAAACTTGTGGAGA
AAGTTATGAAGGCCACATTGGAGGTCCTCTCTATGCGTTGTCAGTACTTT
CGGGAGATTGTGGAGCTCGGAACCGAAACTGCCCTTGACATTTCATTCCT
CGACGGGCGAGGGCGTGACGGGGTTTTCTCTGAATCCTATCCTGCGGCTT
GA
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protein sequence of Gcaud777.t1

>Gcaud777.t1 ID=Gcaud777.t1|Name=Gcaud777.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=184bp
MNDSPDQHASQDAGPSSSAGSSASILIVAWNTAKLTTRDFGAVVEEINST
KVVGQSSTFEREPYVPVAPIGYFRSPAHASLTSLKSKDLRSAKEWEYANA
AGVSTELAIAALKIAKSEGGSFDHTVRKLKLVEKVMKATLEVLSMRCQYF
REIVELGTETALDISFLDGRGRDGVFSESYPAA*
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mRNA from alignment at NODE_864_length_16904_cov_4.610361:8920..9471-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud777.t1 ID=Gcaud777.t1|Name=Gcaud777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=552bp|location=Sequence derived from alignment at NODE_864_length_16904_cov_4.610361:8920..9471- (Gracilaria caudata M_176_S67 male)
ATGAATGATTCTCCTGACCAACACGCGTCTCAAGACGCCGGACCGTCGAG
CAGTGCAGGGTCTAGCGCTTCAATTCTTATAGTAGCGTGGAATACAGCTA
AACTCACTACTCGAGACTTTGGAGCGGTGGTTGAGGAGATCAACTCAACC
AAGGTCGTTGGTCAAAGCAGCACGTTCGAGCGTGAGCCGTATGTGCCTGT
CGCTCCCATTGGATATTTCAGATCTCCCGCTCATGCCTCTCTCACAAGTC
TCAAGTCCAAGGATCTGCGCTCTGCGAAAGAGTGGGAGTACGCTAACGCC
GCTGGCGTCTCGACGGAGTTAGCGATAGCGGCGCTGAAGATAGCTAAAAG
TGAAGGGGGCTCGTTTGACCATACGGTGCGCAAGCTCAAACTTGTGGAGA
AAGTTATGAAGGCCACATTGGAGGTCCTCTCTATGCGTTGTCAGTACTTT
CGGGAGATTGTGGAGCTCGGAACCGAAACTGCCCTTGACATTTCATTCCT
CGACGGGCGAGGGCGTGACGGGGTTTTCTCTGAATCCTATCCTGCGGCTT
GA
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Coding sequence (CDS) from alignment at NODE_864_length_16904_cov_4.610361:8920..9471-

>Gcaud777.t1 ID=Gcaud777.t1|Name=Gcaud777.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=552bp|location=Sequence derived from alignment at NODE_864_length_16904_cov_4.610361:8920..9471- (Gracilaria caudata M_176_S67 male)
ATGAATGATTCTCCTGACCAACACGCGTCTCAAGACGCCGGACCGTCGAG
CAGTGCAGGGTCTAGCGCTTCAATTCTTATAGTAGCGTGGAATACAGCTA
AACTCACTACTCGAGACTTTGGAGCGGTGGTTGAGGAGATCAACTCAACC
AAGGTCGTTGGTCAAAGCAGCACGTTCGAGCGTGAGCCGTATGTGCCTGT
CGCTCCCATTGGATATTTCAGATCTCCCGCTCATGCCTCTCTCACAAGTC
TCAAGTCCAAGGATCTGCGCTCTGCGAAAGAGTGGGAGTACGCTAACGCC
GCTGGCGTCTCGACGGAGTTAGCGATAGCGGCGCTGAAGATAGCTAAAAG
TGAAGGGGGCTCGTTTGACCATACGGTGCGCAAGCTCAAACTTGTGGAGA
AAGTTATGAAGGCCACATTGGAGGTCCTCTCTATGCGTTGTCAGTACTTT
CGGGAGATTGTGGAGCTCGGAACCGAAACTGCCCTTGACATTTCATTCCT
CGACGGGCGAGGGCGTGACGGGGTTTTCTCTGAATCCTATCCTGCGGCTT
GA
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