Gcaud7368.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7368.t1
Unique Name	Gcaud7368.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_85_length_54060_cov_4.846356	contig	NODE_85_length_54060_cov_4.846356:35404..36288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4787.PITG_06142T0
PFAMs	C2,Copine,Ion_trans_2
Max annot lvl	4776\|Peronosporales
Evalue	6.79e-06
EggNOG OGs	KOG1327@1\|root,KOG1327@2759\|Eukaryota,3QBUD@4776\|Peronosporales
Description	Copine
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7368	Gcaud7368	Gracilaria caudata M_176_S67 male	gene	NODE_85_length_54060_cov_4.846356 35404..36288 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7368.t1	Gcaud7368.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_85_length_54060_cov_4.846356 35404..36288 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7368.t1.start1	Gcaud7368.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_85_length_54060_cov_4.846356 35404..35406 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7368.t1.CDS1	Gcaud7368.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 35404..35775 +
Gcaud7368.t1.CDS2	Gcaud7368.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 35838..35868 +
Gcaud7368.t1.CDS3	Gcaud7368.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 35963..36288 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7368.t1.exon1	Gcaud7368.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 35404..35775 +
Gcaud7368.t1.exon2	Gcaud7368.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 35838..35868 +
Gcaud7368.t1.exon3	Gcaud7368.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 35963..36288 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7368.t1.intron1	Gcaud7368.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_85_length_54060_cov_4.846356 35776..35837 +
Gcaud7368.t1.intron2	Gcaud7368.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_85_length_54060_cov_4.846356 35869..35962 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7368.t1.stop1	Gcaud7368.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_85_length_54060_cov_4.846356 36286..36288 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+
coding sequence from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+

mRNA sequence

>Gcaud7368.t1 ID=Gcaud7368.t1|Name=Gcaud7368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MEGSSFRYYELKISAKRLPGRSLRVDPIAVVYSKNSSNSEWGELGRTEKR
LNEWNPNFSTPIVLPADNDNQRRVDLRVDFYHKEVKDGRFLGAVEVNMFS
LIFTKGQPVELELKTPESTRGSPRLSAYANKLLWRWGQFPTHEISMRDLT
MDVESAGLLISLYRYRRIGTRKLLGHFQTSIKELTRKSAGDFIPFTANPN
EDIVSADVQVLHTQKNGLVYEFGLKLINVLWNATNLLENQVR*

spliced messenger RNA

>Gcaud7368.t1 ID=Gcaud7368.t1|Name=Gcaud7368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGCTCGTCCTTTCGCTACTACGAGCTCAAAATTTCTGCAAAGCG
TCTTCCCGGTCGTTCGCTTCGCGTTGATCCTATTGCAGTTGTCTACTCGA
AGAACAGTTCAAACTCAGAATGGGGAGAACTGGGACGTACTGAGAAGAGG
TTGAACGAATGGAACCCCAACTTCTCCACTCCTATTGTACTGCCTGCAGA
CAACGATAATCAACGTCGAGTTGACTTGAGAGTTGACTTTTATCACAAAG
AAGTCAAGGATGGTCGATTTTTGGGTGCCGTTGAAGTCAATATGTTTTCC
CTAATATTCACCAAAGGGCAGCCAGTTGAACTTGAACTGAAGACTCCTGA
GTCAACTCGAGGAAGTCCAAGGCTTTCAGCTTATGCAAACAAACTTCTAT
GGAGGTGGGGCCAATTCCCAACACATGAAATAAGCATGCGCGATCTGACA
ATGGACGTGGAAAGTGCGGGGTTGCTCATCAGTCTCTACCGCTACAGACG
TATCGGAACACGGAAACTCCTAGGCCATTTCCAAACTTCCATCAAAGAGT
TGACAAGAAAGAGTGCAGGCGATTTCATTCCGTTCACCGCGAATCCAAAC
GAAGACATTGTGTCTGCAGACGTTCAAGTGCTTCATACACAGAAGAACGG
TCTCGTGTACGAATTTGGCCTGAAACTTATCAACGTTCTATGGAATGCCA
CAAATCTTTTGGAGAACCAAGTCCGTTAG

protein sequence of Gcaud7368.t1

>Gcaud7368.t1 ID=Gcaud7368.t1|Name=Gcaud7368.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MEGSSFRYYELKISAKRLPGRSLRVDPIAVVYSKNSSNSEWGELGRTEKR
LNEWNPNFSTPIVLPADNDNQRRVDLRVDFYHKEVKDGRFLGAVEVNMFS
LIFTKGQPVELELKTPESTRGSPRLSAYANKLLWRWGQFPTHEISMRDLT
MDVESAGLLISLYRYRRIGTRKLLGHFQTSIKELTRKSAGDFIPFTANPN
EDIVSADVQVLHTQKNGLVYEFGLKLINVLWNATNLLENQVR*

mRNA from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7368.t1 ID=Gcaud7368.t1|Name=Gcaud7368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=885bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+ (Gracilaria caudata M_176_S67 male)
ATGGAAGGCTCGTCCTTTCGCTACTACGAGCTCAAAATTTCTGCAAAGCG
TCTTCCCGGTCGTTCGCTTCGCGTTGATCCTATTGCAGTTGTCTACTCGA
AGAACAGTTCAAACTCAGAATGGGGAGAACTGGGACGTACTGAGAAGAGG
TTGAACGAATGGAACCCCAACTTCTCCACTCCTATTGTACTGCCTGCAGA
CAACGATAATCAACGTCGAGTTGACTTGAGAGTTGACTTTTATCACAAAG
AAGTCAAGGATGGTCGATTTTTGGGTGCCGTTGAAGTCAATATGTTTTCC
CTAATATTCACCAAAGGGCAGCCAGTTGAACTTGAACTGAAGACTCCTGA
GTCAACTCGAGGAAGTCCAAGGGTATTTCTCACAGCCTTGGAAGGCTTTC
GAACGGTGTCAGAACCTTCGTCTGTGAAACTGAGCTTTCAGCTTATGCAA
ACAAACTTCTATGGAGTGAGTATGCGAGTGTTTTACGAAATATCGAGGGC
GGGGGAGGGCACGTGGCATCCGGTGTTCAAGAGTTCTCACATTCTAATTG
ACCAACAAGGGTGGGGCCAATTCCCAACACATGAAATAAGCATGCGCGAT
CTGACAATGGACGTGGAAAGTGCGGGGTTGCTCATCAGTCTCTACCGCTA
CAGACGTATCGGAACACGGAAACTCCTAGGCCATTTCCAAACTTCCATCA
AAGAGTTGACAAGAAAGAGTGCAGGCGATTTCATTCCGTTCACCGCGAAT
CCAAACGAAGACATTGTGTCTGCAGACGTTCAAGTGCTTCATACACAGAA
GAACGGTCTCGTGTACGAATTTGGCCTGAAACTTATCAACGTTCTATGGA
ATGCCACAAATCTTTTGGAGAACCAAGTCCGTTAG

Coding sequence (CDS) from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+

>Gcaud7368.t1 ID=Gcaud7368.t1|Name=Gcaud7368.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=729bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:35404..36288+ (Gracilaria caudata M_176_S67 male)
ATGGAAGGCTCGTCCTTTCGCTACTACGAGCTCAAAATTTCTGCAAAGCG
TCTTCCCGGTCGTTCGCTTCGCGTTGATCCTATTGCAGTTGTCTACTCGA
AGAACAGTTCAAACTCAGAATGGGGAGAACTGGGACGTACTGAGAAGAGG
TTGAACGAATGGAACCCCAACTTCTCCACTCCTATTGTACTGCCTGCAGA
CAACGATAATCAACGTCGAGTTGACTTGAGAGTTGACTTTTATCACAAAG
AAGTCAAGGATGGTCGATTTTTGGGTGCCGTTGAAGTCAATATGTTTTCC
CTAATATTCACCAAAGGGCAGCCAGTTGAACTTGAACTGAAGACTCCTGA
GTCAACTCGAGGAAGTCCAAGGCTTTCAGCTTATGCAAACAAACTTCTAT
GGAGGTGGGGCCAATTCCCAACACATGAAATAAGCATGCGCGATCTGACA
ATGGACGTGGAAAGTGCGGGGTTGCTCATCAGTCTCTACCGCTACAGACG
TATCGGAACACGGAAACTCCTAGGCCATTTCCAAACTTCCATCAAAGAGT
TGACAAGAAAGAGTGCAGGCGATTTCATTCCGTTCACCGCGAATCCAAAC
GAAGACATTGTGTCTGCAGACGTTCAAGTGCTTCATACACAGAAGAACGG
TCTCGTGTACGAATTTGGCCTGAAACTTATCAACGTTCTATGGAATGCCA
CAAATCTTTTGGAGAACCAAGTCCGTTAG