Gcaud7368.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7368.t1
Unique NameGcaud7368.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length243
Homology
BLAST of Gcaud7368.t1 vs. uniprot
Match: A0A2V3J244_9FLOR (Copine-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J244_9FLOR)

HSP 1 Score: 364 bits (934), Expect = 1.300e-124
Identity = 188/294 (63.95%), Postives = 215/294 (73.13%), Query Frame = 0
Query:    1 MEGSSFRYYELKISAKRLPGRSLRVDPIAVVYSKNSSNSEWGELGRTEKRLNEWNPNFSTPIVLPADNDNQRRVDLRVDFYHKEVKDGRFLGAVEVNMFSLIFTKGQPVELELKTPESTRGSPRL----------------------------------------------------SAYANKLLWRWGQFPTHEISMRDLTMDVESAGLLISLYRYRRIGTRKLLGHFQTSIKELTRKSAGDFIPFTANPNEDIVSADVQVLHTQKNGLVYEFGLKLINVLWNATNLLENQVR 242
            M+ S+FRYYELKISAKRLPGRSLR+DPIAVV+SK++++SEW ELGRTE+RLNEWNPNF++ I LPADNDNQRRV+LRVDFY+KEV+  RFLGAVEVN+FSLI+ KGQPVELELKTPE TRGSPR+                                                    S Y       WGQFPT+EISMRDL MDVESAGLLI+LYRYRR+G RKLLGHFQ S+KELTR S GDFIPF+ANPNEDI++ADVQV H QK GLVYE GLKLINV WNAT+L ++QVR
Sbjct:    1 MQASTFRYYELKISAKRLPGRSLRIDPIAVVFSKDNTSSEWNELGRTERRLNEWNPNFASAIRLPADNDNQRRVELRVDFYNKEVQTARFLGAVEVNIFSLIYAKGQPVELELKTPEPTRGSPRVFLTALQGFRTESEQSSVKLSFQLMQTNFYGVSMRMFYEISRAAEGQWHSVFKSDYIQIDQQGWGQFPTYEISMRDLAMDVESAGLLINLYRYRRLGARKLLGHFQISVKELTRMSVGDFIPFSANPNEDIIAADVQVQHVQKTGLVYEIGLKLINVHWNATSLTDSQVR 294          
BLAST of Gcaud7368.t1 vs. uniprot
Match: R7QJD6_CHOCR (C2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJD6_CHOCR)

HSP 1 Score: 280 bits (716), Expect = 1.710e-91
Identity = 150/295 (50.85%), Postives = 186/295 (63.05%), Query Frame = 0
Query:    1 MEGSSFRYYELKISAKRLPGRSLRVDPIAVVYSKNSSNSEWGELGRTEKRLNEWNPNFSTPIVLPADNDNQRRVDLRVDFYHKEVKDGRFLGAVEVNMFSLIFTKGQPVELELKTPESTRGSPRL---------------SAYANKLL-------------------------W--------------RWGQFPTHEISMRDLTMDVESAGLLISLYRYRRIGTRKLLGHFQTSIKELTRKSAGDFIPFTANPNEDIVSADVQVLHTQKNGLVYEFGLKLINVLWNATNLLENQV 241
            M+ S+FR+Y LKISAKRLPGR LR+DP+AVV+   +   +W E+GRTEKRLNEWNP+F+  I LP DNDNQRR  +RVDFY+KE+ + RFLG  EVN ++LI  KG  VELEL TPE  +GSPR+               S+  N  +                         W               WGQFP ++ISM+DLTMD ES GLL +LYRYRR+G++KLLG FQTSI EL+RKS G+F+ FT N  E +++ADVQVLHTQK G  Y+  LKL+NV WNAT L E  V
Sbjct:    1 MQSSTFRFYHLKISAKRLPGRQLRLDPLAVVFVGGAG--QWNEIGRTEKRLNEWNPSFAKSITLPGDNDNQRRAQVRVDFYNKEMTESRFLGTCEVNFYALIHAKGTSVELELNTPEPVKGSPRVFLTAQEGYNQPGADSSSLVNLSMQLMQTNYYGVSMRIYYEISRAGNGTWVPVHKSENIQIDEQGWGQFPANKISMQDLTMDEESCGLLFNLYRYRRLGSKKLLGCFQTSILELSRKSVGEFVQFTPNHKEGLLAADVQVLHTQKTGSTYDVSLKLVNVQWNATLLTEATV 293          
BLAST of Gcaud7368.t1 vs. uniprot
Match: A0A1X6PGD5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PGD5_PORUM)

HSP 1 Score: 75.1 bits (183), Expect = 2.940e-12
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  134 WRWGQFPTHEISMRDLTM---DVESAGLLISLYRYRRIGTRKLLGHFQTSIKELTRKSAGDF--IPFTANPNEDIVSADVQVLHTQKNGLVYEFGLKLINVLW 231
            +RWGQF T + S  +L +    ++   LL+ +YRY+ IG+ +L+GH   S+++L +   G+   + FT NP  +++SADV V+H  +   V +  LKL+NV W
Sbjct:  188 FRWGQFDTLKRSFDELGLAGIGLDGTTLLLQVYRYKGIGSHRLVGHIDFSVEQLLKARPGEVGAVTFTPNPMGEVLSADVAVMHGTEYRNVVKLSLKLVNVSW 290          
The following BLAST results are available for this feature:
BLAST of Gcaud7368.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J244_9FLOR1.300e-12463.95Copine-1 n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
R7QJD6_CHOCR1.710e-9150.85C2 domain-containing protein n=1 Tax=Chondrus cris... [more]
A0A1X6PGD5_PORUM2.940e-1236.89Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 13..100
e-value: 0.0046
score: 17.2
IPR000008C2 domainPROSITEPS50004C2coord: 1..111
score: 9.477167
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 10..127
e-value: 1.2E-6
score: 30.3
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 13..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_85_length_54060_cov_4.846356contigNODE_85_length_54060_cov_4.846356:35404..36288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7368.t1Gcaud7368.t1Gracilaria caudata M_176_S67 malemRNANODE_85_length_54060_cov_4.846356 35404..36288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7368.t1 ID=Gcaud7368.t1|Name=Gcaud7368.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MEGSSFRYYELKISAKRLPGRSLRVDPIAVVYSKNSSNSEWGELGRTEKR
LNEWNPNFSTPIVLPADNDNQRRVDLRVDFYHKEVKDGRFLGAVEVNMFS
LIFTKGQPVELELKTPESTRGSPRLSAYANKLLWRWGQFPTHEISMRDLT
MDVESAGLLISLYRYRRIGTRKLLGHFQTSIKELTRKSAGDFIPFTANPN
EDIVSADVQVLHTQKNGLVYEFGLKLINVLWNATNLLENQVR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf