Gcaud1700.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1700.t1
Unique NameGcaud1700.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length276
Homology
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A2V3J1W4_9FLOR (Structural maintenance of chromosomes protein 6A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1W4_9FLOR)

HSP 1 Score: 280 bits (716), Expect = 6.560e-93
Identity = 138/158 (87.34%), Postives = 150/158 (94.94%), Query Frame = 0
Query:  115 LVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQLLERPRPATGSSGRRQSTIDEFT 272
            +VR+HFRQFL AKGHTG +RFGTNSNG+ EL ITTQLQHHE++NGERHTIE+LSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAF+KMTDFCT YLSDKQIIIITPQKLPHLE+SPSI+IQ+LE PRP T SSGRRQSTIDEF+
Sbjct:    1 MVRSHFRQFLSAKGHTGNIRFGTNSNGEGELSITTQLQHHEIRNGERHTIEKLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFKKMTDFCTAYLSDKQIIIITPQKLPHLENSPSIKIQVLEPPRPQTDSSGRRQSTIDEFS 158          
BLAST of Gcaud1700.t1 vs. uniprot
Match: R7QKQ0_CHOCR (SMC_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKQ0_CHOCR)

HSP 1 Score: 229 bits (584), Expect = 6.860e-65
Identity = 127/274 (46.35%), Postives = 183/274 (66.79%), Query Frame = 0
Query:    2 AHREVNVQRNKVVEHTDPARSLGASPENEDWLKWSSEKAQRRVRTLQERLRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQLLERPRPATGSSGRRQSTIDEFTGTS 275
            AH+E++ Q+ KV E    AR+ G  PEN D    SS    R + T + RL TEQ+R GG++A +IE +YL++ K++ EN + +ER+ +Y   L  G   R + L  L+ +LKK+V+ +FR+FL  +GH+G++ FG ++ G   LR++T++  H+  +GERH  + L ++SGGE+SYTTL FILALAEICQ P+RV DEIDVFQD+A+R  +F  +T FCTQYLS++QIIIITP  LP+  S+ S+R+  L  P P       RQ+ +D F G S
Sbjct:  934 AHQEIDSQKGKVAETMVQARNTGDCPENIDPSVKSSSAWGRYLTTQKRRLETEQERRGGRTAGEIELDYLESKKKHDENVQFRERVKYYVKMLKRGTNYREDLLIKLHSSLKKMVKANFRRFLSTRGHSGSISFGKSTGGVPTLRLSTEMGTHQKVDGERHRTDDLRTLSGGEKSYTTLCFILALAEICQTPIRVMDEIDVFQDEASRHASFTTITQFCTQYLSNRQIIIITPLALPNFTSNESVRVVRL--PDPLRQEGRGRQTIMDTFMGES 1205          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A1X6NWZ4_PORUM (SMC_N domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWZ4_PORUM)

HSP 1 Score: 132 bits (331), Expect = 5.290e-31
Identity = 81/210 (38.57%), Postives = 118/210 (56.19%), Query Frame = 0
Query:   50 RLRTEQKRHGGKSAHQIETEYLQAMKQYKENKE----RQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHH-EMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQLLERP 254
            RL  EQ RH  +S  +IE E L+A  +   N +     ++ ++    CL     +R+++L  L   L++L   +F +F+  +GH G L F   S  D  LR    ++ H   + G  H    L S+SGGERSYTTL F+LAL E   +PVR+ DE DVF D+A R  A++ + DF  + LSD+Q+I ITP  LP +E  P+++IQ L  P
Sbjct: 1023 RLEAEQARHDDRSVDEIEAELLEAQLRKASNDKDMLSMKQSLASIRRCLI----QRKKQLRELTSFLQQLANYYFSKFMRTRGHVGKLIF---SGKDRTLRFEIHMKDHINTEEGGLHATTDLRSLSGGERSYTTLCFMLALGESMVLPVRIMDEFDVFMDEANRHAAYKTLVDFARKQLSDRQLIFITPLTLPAVEPGPAVKIQRLNPP 1225          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A5J4Z9C4_PORPP (Structural maintenance of chromosomes protein 6 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9C4_PORPP)

HSP 1 Score: 109 bits (273), Expect = 2.560e-23
Identity = 70/236 (29.66%), Postives = 126/236 (53.39%), Query Frame = 0
Query:   20 ARSLGASPENEDWLKWSSEKAQRRVRTLQERLRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQLLERPR 255
            A + G+    E+ L+ S  + +  +  L+ R+R E  R  G+   Q+E ++L   ++ +  + R   +    + +  GI +R++    L K L+ +    F  +L  + H G + F   ++ +  L IT Q+  H   +G     ++L S+SGGE+S+ TLA +LAL E   +P R+ DE DVF D+A R  A+  +    ++   ++Q I ITP +LP++++S S +IQ+L  P+
Sbjct:  956 AAATGSEKPREEELQRSQAQIEGEMEALRHRIRDESSRFEGRDLEQLELDFLDFKRKKETIEGRMHELRAMRDRIQAGIVKRKKSWRRLRKDLQHITNLLFGYYLARRKHAGRIDF---ADKEETLNITVQIGTHTKGDGSIAETKELRSLSGGEKSFVTLALVLALGESMGIPFRIMDEFDVFMDEANRHAAYGIIVKMASEQ-KNRQFIFITPHQLPNIKASESCKIQVLRPPQ 1187          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A7S1SHS8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SHS8_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 7.620e-19
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = 0
Query:   75 KQYKENKERQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESS 243
            K+ +  K R E+       L  G+  RR++L  + + ++  V+  F+ ++  KG+ GT+R   N  G   + +T     +E  +G    +E L S+SGGE+S+TT++FILAL EI + P R  DE DV+ D   RR++ + +  F  Q LS  Q + +TPQ +  +E +
Sbjct:  910 KKQRTKKRRYEQFCDPVRMLANGLDTRRKRLKDMGRRIESQVQTRFKHYMSQKGNVGTIRLNRNE-GKLVMSVTMSNSKNEKNSG---AVEDLKSLSGGEKSFTTVSFILALGEITENPFRAMDEFDVYMDAVNRRISMQSLIKFAFQ-LSHVQFLFLTPQDISAVEDA 1073          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A7S3UWL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL6_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 5.570e-18
Identity = 64/212 (30.19%), Postives = 115/212 (54.25%), Query Frame = 0
Query:   43 RVRTLQERLRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTV--GIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDF-CTQYLSDKQIIIITPQKLPHLESSPSIRIQLL 251
            R RT Q + + EQ+    KS  + ET+YL+A  +Y++ ++  E  + + N + +   I  R +K  + +K  ++   + F ++L  +G +G + F +N   +  L+I  Q  + +    E      + ++SGGERS TTLA +LAL    + P RV DE D+F D   R++A +++ +     ++ ++Q+I+ITPQ L  +E  P  R  L+
Sbjct:   26 RRRTEQLKQKREQQALQRKSKQECETQYLRAKAKYRDKED--ELKTKWTNAMALQKDIAERMDKYKAFSKFFRRSTNHMFDEYLQQRGSSGGIHFNSN---EKTLQIVVQKDNMD----EATQTTDIKALSGGERSATTLALLLALGANIECPFRVMDEFDIFMDAMARKLAMQQVIEHGMADFMENRQMILITPQNLKDVEDHPKFREGLI 228          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A5B8MHC8_9CHLO (Structural maintenance of chromosomes protein 6 n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MHC8_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 6.400e-18
Identity = 56/177 (31.64%), Postives = 99/177 (55.93%), Query Frame = 0
Query:   65 QIETEYLQAMKQYKENKERQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLE 241
            ++E ++ Q  K++ ++++   RI      +   ++ R     S+ + L+K+  NHF   +G +GH+G ++F   ++ D +L I+ ++     K G +  ++ + S+SGGERS +TL FILAL   C+ P R  DE DVF D   R+V+ R +  F       +Q+I++TPQ L  +E
Sbjct:  973 ELELKFYQCEKEFDQHQKVYVRIREPYELIKESLEDRWGTFESMRRHLQKITSNHFNSNMGKRGHSGQMKF---NHKDEKLSISVRMNQGTGKAGSK--VKDMKSLSGGERSLSTLNFILALGTECESPFRAADEFDVFMDAVNRKVSLRTLLTFAVDN-PHQQMILLTPQDLSQVE 1143          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A7S4NJE4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJE4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.960e-17
Identity = 65/198 (32.83%), Postives = 98/198 (49.49%), Query Frame = 0
Query:   69 EYLQAMKQYKENKERQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQLLERPRPATGSSGRRQS 266
            +Y +A K   +  E+ E I      +    + RR++       L +   N F Q L  KG +G L F   ++ DH L +  Q  +      E    + + ++SGGERS+TTLA +LAL E  + P RV DE DVF D   R++A   M     + L  +Q I ITPQ L +L++ P ++I  +    PA  SS  +Q+
Sbjct: 1110 QYRRAKKDLDDKVEQIETIGSNVEAMIKDSRGRRKRWMEFRAHLVETTNNSFDQMLNKKGSSGQLEF---NHDDHSLNLIVQKDN----TNEMSQTKDVKALSGGERSFTTLALLLALGESLETPFRVMDEFDVFLDPVARKIALDNMVT-AAKSLEHRQFIFITPQDLSNLKTDPMLKI--IRMKPPARQSSASQQT 1297          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A7S1V7X1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V7X1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.840e-17
Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 0
Query:   92 NCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQLLERPRPATGSSGRRQSTID 269
            + L   +K RR+      K L ++    F + L  KG +G+L+F      DHE      +   + K+    T + + ++SGGERS+TT+A +L+L E  + P RV DE DVF D   RR+A + + D   + L+ +Q I ITPQ L  L     ++I  L+ P     +S   Q T+D
Sbjct:  445 DSLVRDLKARRKLWFQFQKYLSEMTNFGFDEMLNTKGSSGSLKF------DHEEHTLDLVVQKDSKDEASQTAD-VKALSGGERSFTTIALLLSLGERLETPFRVMDEFDVFLDPVARRLALKTLIDLAKR-LNHRQFIFITPQDLSGLTPDDKLKIHKLKAPARNAAASNLTQQTLD 614          
BLAST of Gcaud1700.t1 vs. uniprot
Match: A0A7S3UD52_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UD52_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 7.120e-17
Identity = 59/205 (28.78%), Postives = 111/205 (54.15%), Query Frame = 0
Query:   37 SEKAQRRVRTLQERLRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTVGIKRRREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQLQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEIDVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLE 241
            +EK   ++ ++++R+   + + GG +  ++E E+    +  +  K + E ++     L +G+++R++ L+   K   + V +HF  ++  KGH G +        D  L I+ ++   +  N +R  ++ L S+SGGERSY TLA +L+L      P RV DE DVF D+  R+++   + +F    + D Q I++TPQ L H++
Sbjct:  924 AEKLTAKLESVKQRIDVGESQLGG-TLMKLEAEHNTLSRSLRRAKRKLEFLTAPYEHLQIGVRKRKKLLSDSEKLCSREVAHHFNLYMMRKGHVGRVNINRK---DETLDISVRMNATD-DNSKR--VKDLRSLSGGERSYATLALVLSLGHQSDCPFRVMDEFDVFMDEVNRKISLNALVEFAASNM-DTQFILLTPQDLSHIQ 1120          
The following BLAST results are available for this feature:
BLAST of Gcaud1700.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1W4_9FLOR6.560e-9387.34Structural maintenance of chromosomes protein 6A n... [more]
R7QKQ0_CHOCR6.860e-6546.35SMC_N domain-containing protein n=1 Tax=Chondrus c... [more]
A0A1X6NWZ4_PORUM5.290e-3138.57SMC_N domain-containing protein n=1 Tax=Porphyra u... [more]
A0A5J4Z9C4_PORPP2.560e-2329.66Structural maintenance of chromosomes protein 6 n=... [more]
A0A7S1SHS8_9CHLO7.620e-1933.14Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3UWL6_HETAK5.570e-1830.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5B8MHC8_9CHLO6.400e-1831.64Structural maintenance of chromosomes protein 6 n=... [more]
A0A7S4NJE4_9STRA2.960e-1732.83Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1V7X1_9STRA5.840e-1733.15Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3UD52_9CHLO7.120e-1728.78Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availableCOILSCoilCoilcoord: 98..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 7..255
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 70..238
e-value: 2.9E-21
score: 77.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 68..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_852_length_17021_cov_7.154341contigNODE_852_length_17021_cov_7.154341:9032..9859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1700.t1Gcaud1700.t1Gracilaria caudata M_176_S67 malemRNANODE_852_length_17021_cov_7.154341 9032..9859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1700.t1 ID=Gcaud1700.t1|Name=Gcaud1700.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MAHREVNVQRNKVVEHTDPARSLGASPENEDWLKWSSEKAQRRVRTLQER
LRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTVGIKR
RREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQ
LQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEI
DVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQL
LERPRPATGSSGRRQSTIDEFTGTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase