Gcaud1709.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1709.t1
Unique NameGcaud1709.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_851_length_17024_cov_4.098683contigNODE_851_length_17024_cov_4.098683:11623..11874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG051CT
PFAMsAlpha-amylase,Alpha-amylase_C,CBM_48,DUF1752,Glyco_transf_4,Glycos_transf_1
Max annot lvl2759|Eukaryota
Evalue8.2e-05
EggNOG OGsCOG0438@1|root,KOG0853@2759|Eukaryota
Descriptionsucrose synthase activity
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1709Gcaud1709Gracilaria caudata M_176_S67 malegeneNODE_851_length_17024_cov_4.098683 11623..11874 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1709.t1.stop1Gcaud1709.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_851_length_17024_cov_4.098683 11623..11625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1709.t1.CDS1Gcaud1709.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_851_length_17024_cov_4.098683 11623..11874 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1709.t1.exon1Gcaud1709.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_851_length_17024_cov_4.098683 11623..11874 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1709.t1.start1Gcaud1709.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_851_length_17024_cov_4.098683 11872..11874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1709.t1Gcaud1709.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_851_length_17024_cov_4.098683 11623..11874 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1709.t1 ID=Gcaud1709.t1|Name=Gcaud1709.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=84bp
MIFERLQKTTWRAYSLNPKKPMALYDAKEKLASDEDLRRQMGASGRKRVL
SQFSFATMSKTYRETNGLDLEMIPNCKVVDVKV*
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spliced messenger RNA

>Gcaud1709.t1 ID=Gcaud1709.t1|Name=Gcaud1709.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=252bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:11623..11874- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATTCGAGAGGCTTCAGAAAACGACGTGGCGGGCCTACTCATTGAA
CCCAAAAAAACCTATGGCCCTTTACGATGCCAAAGAGAAACTCGCAAGTG
ATGAAGACTTGAGACGCCAGATGGGAGCTTCTGGACGTAAACGAGTGTTG
TCTCAATTCAGTTTTGCCACCATGTCTAAGACGTATCGCGAAACTAATGG
CTTGGATTTGGAAATGATTCCTAATTGCAAGGTTGTCGATGTCAAGGTGT
AG
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protein sequence of Gcaud1709.t1

>Gcaud1709.t1 ID=Gcaud1709.t1|Name=Gcaud1709.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=84bp
MIFERLQKTTWRAYSLNPKKPMALYDAKEKLASDEDLRRQMGASGRKRVL
SQFSFATMSKTYRETNGLDLEMIPNCKVVDVKV*
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mRNA from alignment at NODE_851_length_17024_cov_4.098683:11623..11874-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1709.t1 ID=Gcaud1709.t1|Name=Gcaud1709.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=252bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:11623..11874- (Gracilaria caudata M_176_S67 male)
ATGATATTCGAGAGGCTTCAGAAAACGACGTGGCGGGCCTACTCATTGAA
CCCAAAAAAACCTATGGCCCTTTACGATGCCAAAGAGAAACTCGCAAGTG
ATGAAGACTTGAGACGCCAGATGGGAGCTTCTGGACGTAAACGAGTGTTG
TCTCAATTCAGTTTTGCCACCATGTCTAAGACGTATCGCGAAACTAATGG
CTTGGATTTGGAAATGATTCCTAATTGCAAGGTTGTCGATGTCAAGGTGT
AG
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Coding sequence (CDS) from alignment at NODE_851_length_17024_cov_4.098683:11623..11874-

>Gcaud1709.t1 ID=Gcaud1709.t1|Name=Gcaud1709.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=252bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:11623..11874- (Gracilaria caudata M_176_S67 male)
ATGATATTCGAGAGGCTTCAGAAAACGACGTGGCGGGCCTACTCATTGAA
CCCAAAAAAACCTATGGCCCTTTACGATGCCAAAGAGAAACTCGCAAGTG
ATGAAGACTTGAGACGCCAGATGGGAGCTTCTGGACGTAAACGAGTGTTG
TCTCAATTCAGTTTTGCCACCATGTCTAAGACGTATCGCGAAACTAATGG
CTTGGATTTGGAAATGATTCCTAATTGCAAGGTTGTCGATGTCAAGGTGT
AG
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