Gcaud1712.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1712.t2
Unique Name	Gcaud1712.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	459

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_851_length_17024_cov_4.098683	contig	NODE_851_length_17024_cov_4.098683:14812..16188 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1712	Gcaud1712	Gracilaria caudata M_176_S67 male	gene	NODE_851_length_17024_cov_4.098683 14812..16188 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1712.t2.stop1	Gcaud1712.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_851_length_17024_cov_4.098683 14812..14814 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1712.t2.CDS1	Gcaud1712.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_851_length_17024_cov_4.098683 14812..16188 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1712.t2.exon1	Gcaud1712.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_851_length_17024_cov_4.098683 14812..16188 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1712.t2.start1	Gcaud1712.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_851_length_17024_cov_4.098683 16186..16188 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1712.t2	Gcaud1712.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_851_length_17024_cov_4.098683 14812..16188 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_851_length_17024_cov_4.098683:14812..16188-
coding sequence from alignment at NODE_851_length_17024_cov_4.098683:14812..16188-

mRNA sequence

>Gcaud1712.t2 ID=Gcaud1712.t2|Name=Gcaud1712.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp
LANGARVQLWESVGELGAVAVAADAGALPLDVVLFVTRLDCSRVGKYDKR
LLSQLCHLFGQRVLHSVVFVLSRGGALAPLNLTFAEFVRLRADLLYVLVK
QVFHPLQVAGGVGLQHAPDVLSQHVQRHASHAEHAEHAEHAEHVPLTAAA
LAALERQITRQWLGRKPSPAVQKLHTCLINDDGTDAGSTSGVPPDFLDDL
FHSGVYPLDRRVFVDPPRPPVVVVELAHSAPRDQHGHALLPNGQPCMPAL
VDVIVRTAARVRAQRQSGEHERREQQFAPEPLSWWRRLHREIVCGGLRTA
VMCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDP
GTDGSVILNSEPPPGEAQEEEQELKDEEKEFFGTEQGEVLKEEPPQTNAE
GEQQFERQVGPEQQHTEGGDVDADWHKLSDDEAIYSQSYTPDNQHKWKHL
LPKTEQTE*

spliced messenger RNA

>Gcaud1712.t2 ID=Gcaud1712.t2|Name=Gcaud1712.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14812..16188- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCAAACGGCGCGCGCGTGCAGCTGTGGGAAAGCGTGGGCGAGCTGGG
CGCTGTGGCGGTGGCGGCGGATGCTGGCGCGTTGCCGCTGGATGTGGTGC
TGTTTGTGACGCGATTGGATTGCTCTAGGGTTGGCAAGTATGACAAGAGG
CTGCTGTCGCAGCTGTGCCACCTGTTTGGGCAGCGCGTGTTGCACAGCGT
GGTGTTCGTGCTCAGTAGGGGCGGCGCGTTGGCGCCGCTCAATCTCACGT
TTGCGGAGTTTGTGCGTCTGCGCGCCGATTTGTTGTACGTGCTGGTGAAG
CAGGTGTTTCACCCGCTGCAGGTGGCGGGTGGTGTGGGGCTGCAGCATGC
GCCCGATGTGTTGTCGCAGCACGTACAACGCCACGCTTCGCACGCCGAGC
ACGCCGAGCACGCCGAGCACGCCGAGCACGTCCCGCTCACTGCCGCCGCG
CTCGCCGCCCTGGAGCGACAGATCACGCGCCAGTGGCTCGGTCGCAAGCC
GTCGCCGGCTGTGCAGAAGCTGCACACCTGTCTCATCAACGACGATGGCA
CCGACGCCGGCAGTACCTCCGGTGTGCCACCCGACTTTCTGGACGATCTC
TTCCACTCCGGCGTGTACCCGCTCGACCGTCGCGTCTTCGTCGATCCGCC
TCGTCCGCCCGTCGTCGTCGTCGAGCTCGCACACTCCGCCCCTCGCGACC
AGCACGGCCACGCGCTGTTACCGAACGGCCAGCCGTGCATGCCCGCGCTC
GTCGATGTGATTGTGCGCACCGCGGCGCGCGTGCGCGCGCAGCGCCAAAG
TGGCGAGCACGAGCGACGGGAGCAGCAGTTTGCGCCGGAGCCGCTTTCAT
GGTGGCGCCGCCTGCACCGCGAGATTGTGTGCGGCGGCCTGCGAACGGCG
GTGATGTGCGTGGCGTTTGTGTATCTGGGCGTGGTGACGTACGCGCAGAT
GCTGGAGAGAGAGCGCAAGTGGAAGGAAGCGCAGGATGACGACGACGTGT
TGCTCAAACTGGACGACGAGGAGTTTAAGCGACTGACCACGCCGGATCCG
GGCACGGACGGCTCTGTGATTCTCAACAGTGAGCCGCCGCCGGGCGAGGC
GCAGGAGGAGGAGCAAGAGTTGAAGGACGAGGAAAAGGAGTTTTTCGGCA
CGGAACAGGGTGAGGTGCTGAAGGAAGAGCCGCCGCAGACGAACGCAGAG
GGGGAGCAACAATTCGAAAGACAAGTGGGACCCGAACAACAGCACACCGA
GGGAGGCGATGTGGACGCCGACTGGCACAAGCTCAGCGACGACGAGGCGA
TTTACAGCCAAAGTTATACGCCGGACAACCAACACAAATGGAAACATCTT
CTACCTAAAACTGAACAAACTGAATAA

protein sequence of Gcaud1712.t2

>Gcaud1712.t2 ID=Gcaud1712.t2|Name=Gcaud1712.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=459bp
LANGARVQLWESVGELGAVAVAADAGALPLDVVLFVTRLDCSRVGKYDKR
LLSQLCHLFGQRVLHSVVFVLSRGGALAPLNLTFAEFVRLRADLLYVLVK
QVFHPLQVAGGVGLQHAPDVLSQHVQRHASHAEHAEHAEHAEHVPLTAAA
LAALERQITRQWLGRKPSPAVQKLHTCLINDDGTDAGSTSGVPPDFLDDL
FHSGVYPLDRRVFVDPPRPPVVVVELAHSAPRDQHGHALLPNGQPCMPAL
VDVIVRTAARVRAQRQSGEHERREQQFAPEPLSWWRRLHREIVCGGLRTA
VMCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDP
GTDGSVILNSEPPPGEAQEEEQELKDEEKEFFGTEQGEVLKEEPPQTNAE
GEQQFERQVGPEQQHTEGGDVDADWHKLSDDEAIYSQSYTPDNQHKWKHL
LPKTEQTE*

mRNA from alignment at NODE_851_length_17024_cov_4.098683:14812..16188-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1712.t2 ID=Gcaud1712.t2|Name=Gcaud1712.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14812..16188- (Gracilaria caudata M_176_S67 male)
TTGGCAAACGGCGCGCGCGTGCAGCTGTGGGAAAGCGTGGGCGAGCTGGG
CGCTGTGGCGGTGGCGGCGGATGCTGGCGCGTTGCCGCTGGATGTGGTGC
TGTTTGTGACGCGATTGGATTGCTCTAGGGTTGGCAAGTATGACAAGAGG
CTGCTGTCGCAGCTGTGCCACCTGTTTGGGCAGCGCGTGTTGCACAGCGT
GGTGTTCGTGCTCAGTAGGGGCGGCGCGTTGGCGCCGCTCAATCTCACGT
TTGCGGAGTTTGTGCGTCTGCGCGCCGATTTGTTGTACGTGCTGGTGAAG
CAGGTGTTTCACCCGCTGCAGGTGGCGGGTGGTGTGGGGCTGCAGCATGC
GCCCGATGTGTTGTCGCAGCACGTACAACGCCACGCTTCGCACGCCGAGC
ACGCCGAGCACGCCGAGCACGCCGAGCACGTCCCGCTCACTGCCGCCGCG
CTCGCCGCCCTGGAGCGACAGATCACGCGCCAGTGGCTCGGTCGCAAGCC
GTCGCCGGCTGTGCAGAAGCTGCACACCTGTCTCATCAACGACGATGGCA
CCGACGCCGGCAGTACCTCCGGTGTGCCACCCGACTTTCTGGACGATCTC
TTCCACTCCGGCGTGTACCCGCTCGACCGTCGCGTCTTCGTCGATCCGCC
TCGTCCGCCCGTCGTCGTCGTCGAGCTCGCACACTCCGCCCCTCGCGACC
AGCACGGCCACGCGCTGTTACCGAACGGCCAGCCGTGCATGCCCGCGCTC
GTCGATGTGATTGTGCGCACCGCGGCGCGCGTGCGCGCGCAGCGCCAAAG
TGGCGAGCACGAGCGACGGGAGCAGCAGTTTGCGCCGGAGCCGCTTTCAT
GGTGGCGCCGCCTGCACCGCGAGATTGTGTGCGGCGGCCTGCGAACGGCG
GTGATGTGCGTGGCGTTTGTGTATCTGGGCGTGGTGACGTACGCGCAGAT
GCTGGAGAGAGAGCGCAAGTGGAAGGAAGCGCAGGATGACGACGACGTGT
TGCTCAAACTGGACGACGAGGAGTTTAAGCGACTGACCACGCCGGATCCG
GGCACGGACGGCTCTGTGATTCTCAACAGTGAGCCGCCGCCGGGCGAGGC
GCAGGAGGAGGAGCAAGAGTTGAAGGACGAGGAAAAGGAGTTTTTCGGCA
CGGAACAGGGTGAGGTGCTGAAGGAAGAGCCGCCGCAGACGAACGCAGAG
GGGGAGCAACAATTCGAAAGACAAGTGGGACCCGAACAACAGCACACCGA
GGGAGGCGATGTGGACGCCGACTGGCACAAGCTCAGCGACGACGAGGCGA
TTTACAGCCAAAGTTATACGCCGGACAACCAACACAAATGGAAACATCTT
CTACCTAAAACTGAACAAACTGAATAA

Coding sequence (CDS) from alignment at NODE_851_length_17024_cov_4.098683:14812..16188-

>Gcaud1712.t2 ID=Gcaud1712.t2|Name=Gcaud1712.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1377bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14812..16188- (Gracilaria caudata M_176_S67 male)
TTGGCAAACGGCGCGCGCGTGCAGCTGTGGGAAAGCGTGGGCGAGCTGGG
CGCTGTGGCGGTGGCGGCGGATGCTGGCGCGTTGCCGCTGGATGTGGTGC
TGTTTGTGACGCGATTGGATTGCTCTAGGGTTGGCAAGTATGACAAGAGG
CTGCTGTCGCAGCTGTGCCACCTGTTTGGGCAGCGCGTGTTGCACAGCGT
GGTGTTCGTGCTCAGTAGGGGCGGCGCGTTGGCGCCGCTCAATCTCACGT
TTGCGGAGTTTGTGCGTCTGCGCGCCGATTTGTTGTACGTGCTGGTGAAG
CAGGTGTTTCACCCGCTGCAGGTGGCGGGTGGTGTGGGGCTGCAGCATGC
GCCCGATGTGTTGTCGCAGCACGTACAACGCCACGCTTCGCACGCCGAGC
ACGCCGAGCACGCCGAGCACGCCGAGCACGTCCCGCTCACTGCCGCCGCG
CTCGCCGCCCTGGAGCGACAGATCACGCGCCAGTGGCTCGGTCGCAAGCC
GTCGCCGGCTGTGCAGAAGCTGCACACCTGTCTCATCAACGACGATGGCA
CCGACGCCGGCAGTACCTCCGGTGTGCCACCCGACTTTCTGGACGATCTC
TTCCACTCCGGCGTGTACCCGCTCGACCGTCGCGTCTTCGTCGATCCGCC
TCGTCCGCCCGTCGTCGTCGTCGAGCTCGCACACTCCGCCCCTCGCGACC
AGCACGGCCACGCGCTGTTACCGAACGGCCAGCCGTGCATGCCCGCGCTC
GTCGATGTGATTGTGCGCACCGCGGCGCGCGTGCGCGCGCAGCGCCAAAG
TGGCGAGCACGAGCGACGGGAGCAGCAGTTTGCGCCGGAGCCGCTTTCAT
GGTGGCGCCGCCTGCACCGCGAGATTGTGTGCGGCGGCCTGCGAACGGCG
GTGATGTGCGTGGCGTTTGTGTATCTGGGCGTGGTGACGTACGCGCAGAT
GCTGGAGAGAGAGCGCAAGTGGAAGGAAGCGCAGGATGACGACGACGTGT
TGCTCAAACTGGACGACGAGGAGTTTAAGCGACTGACCACGCCGGATCCG
GGCACGGACGGCTCTGTGATTCTCAACAGTGAGCCGCCGCCGGGCGAGGC
GCAGGAGGAGGAGCAAGAGTTGAAGGACGAGGAAAAGGAGTTTTTCGGCA
CGGAACAGGGTGAGGTGCTGAAGGAAGAGCCGCCGCAGACGAACGCAGAG
GGGGAGCAACAATTCGAAAGACAAGTGGGACCCGAACAACAGCACACCGA
GGGAGGCGATGTGGACGCCGACTGGCACAAGCTCAGCGACGACGAGGCGA
TTTACAGCCAAAGTTATACGCCGGACAACCAACACAAATGGAAACATCTT
CTACCTAAAACTGAACAAACTGAATAA