Gcaud1713.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1713.t1
Unique Name	Gcaud1713.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	614

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_850_length_17024_cov_4.708026	contig	NODE_850_length_17024_cov_4.708026:11006..12847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706665.1
PFAMs	Glyco_transf_25
Max annot lvl	2759\|Eukaryota
Evalue	1.04e-42
EggNOG OGs	KOG4179@1\|root,KOG4179@2759\|Eukaryota
Description	procollagen galactosyltransferase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1713	Gcaud1713	Gracilaria caudata M_176_S67 male	gene	NODE_850_length_17024_cov_4.708026 11006..12847 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1713.t1.start1	Gcaud1713.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_850_length_17024_cov_4.708026 11006..11008 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1713.t1.CDS1	Gcaud1713.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_850_length_17024_cov_4.708026 11006..12847 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1713.t1.exon1	Gcaud1713.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_850_length_17024_cov_4.708026 11006..12847 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1713.t1.stop1	Gcaud1713.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_850_length_17024_cov_4.708026 12845..12847 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1713.t1	Gcaud1713.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_850_length_17024_cov_4.708026 11006..12847 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+
coding sequence from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+

mRNA sequence

>Gcaud1713.t1 ID=Gcaud1713.t1|Name=Gcaud1713.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=614bp
MRATQSSVRAFCVVAFDPDPLMAKPLNNIRSRKATKTAHFDVFTQLVPAS
SNGTEAVSFRAPNSIAEVGEPIDVRSFALKEFIDGVTYPWEESGNDVSKM
NLAKGNGNLGTVVVRFNVLPYPEVYWYLELLEALDPKGVMCKKIDRLILN
FERIDLDKNPQTSDLEDRDAVRDWDHIVSPAPSAKLDPNNGFQGIMNLAE
EISNLESCRTMVHVFDQSGNRVYPPVLSERQVYYAILAGQPTFDERVGAQ
TETWMTAVPQDRLTIFTNLPRNEDELKAARGRQVAVVQPNRPEMELRLSL
MQSWSHLVRVRESWDRAMKDNPDIKWLALVDDDTFVFPGGVREYLTMFDH
RMKFWGGSGEQARIDNGDSGSFARWLRNASKQFGGPHCYMQNEDVPKNLQ
GEHVEYSVSKVLNGRKVMRKVSHMCGDAFCSIGCPAVPQGAAIFLSRALV
EALRPHVEQCELDTKELCKNCGSQRLYMCVNRYAGPARTLLMRGVCRAPW
KLEHRSSFPFALTYHGFGRYRGNFLSTSSLRDDMVELWQLGKSVEESVKY
GYVPSYLIPMQKISDLLGCHNQGTYVNGECITTNGIKFDSADRHENNEKT
LPGHQPSDRKGSA*

spliced messenger RNA

>Gcaud1713.t1 ID=Gcaud1713.t1|Name=Gcaud1713.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCAACGCAGAGTTCTGTTCGAGCGTTTTGTGTCGTTGCATTTGA
TCCAGATCCATTAATGGCGAAGCCCTTGAACAACATCAGATCCCGGAAGG
CCACGAAAACGGCACACTTTGATGTCTTCACTCAGCTGGTGCCTGCCTCT
TCGAATGGCACGGAAGCCGTGTCTTTTCGAGCTCCAAACTCAATTGCAGA
AGTCGGGGAACCCATTGACGTTCGCAGTTTCGCGCTCAAAGAGTTTATCG
ATGGTGTCACATATCCATGGGAGGAAAGCGGCAATGATGTTTCCAAGATG
AACCTTGCCAAAGGAAATGGCAATCTTGGCACTGTTGTGGTGCGCTTCAA
CGTTTTACCTTATCCGGAAGTGTACTGGTATCTGGAATTACTTGAAGCAT
TGGATCCTAAGGGTGTTATGTGCAAAAAAATTGATCGTCTCATACTCAAC
TTCGAACGAATTGACCTTGACAAGAATCCCCAGACATCAGACCTAGAAGA
CCGCGATGCAGTCCGAGATTGGGATCATATCGTATCACCGGCACCCTCTG
CAAAGCTAGATCCTAATAACGGCTTCCAAGGCATTATGAATCTGGCCGAA
GAAATCAGCAATCTGGAAAGCTGTCGCACTATGGTTCACGTATTTGACCA
AAGCGGAAACAGAGTTTATCCACCTGTCTTGTCTGAGAGACAGGTATATT
ATGCCATTTTGGCCGGACAGCCAACTTTTGATGAGAGAGTGGGGGCACAG
ACTGAGACTTGGATGACGGCTGTTCCCCAGGACAGATTAACCATTTTTAC
AAACCTTCCTAGGAATGAGGATGAACTGAAAGCCGCTCGTGGGCGGCAAG
TTGCAGTTGTTCAGCCGAATAGGCCTGAAATGGAACTACGATTGTCTTTA
ATGCAGTCATGGAGTCACTTGGTAAGAGTTCGCGAAAGCTGGGATCGTGC
AATGAAAGATAATCCTGACATCAAATGGCTTGCGCTCGTAGACGATGATA
CGTTTGTTTTCCCTGGGGGAGTAAGAGAATATCTCACAATGTTCGATCAT
CGCATGAAATTTTGGGGGGGGTCTGGTGAACAAGCGCGCATAGATAATGG
TGACAGCGGAAGTTTTGCGCGCTGGCTTCGCAATGCGAGCAAACAATTCG
GCGGTCCTCACTGCTACATGCAAAATGAAGACGTGCCGAAGAACCTTCAA
GGGGAACATGTAGAATATAGCGTGAGCAAGGTGCTGAACGGTCGGAAAGT
GATGCGAAAAGTATCGCATATGTGTGGAGATGCATTCTGCAGCATTGGAT
GTCCGGCGGTACCACAGGGAGCAGCTATATTTTTATCAAGGGCCCTTGTA
GAAGCGTTGCGGCCGCATGTGGAACAGTGTGAGTTGGATACGAAGGAACT
ATGCAAGAACTGCGGATCACAACGTCTCTACATGTGTGTGAATCGCTATG
CAGGTCCAGCTCGAACACTGCTAATGAGGGGGGTTTGTAGAGCTCCATGG
AAGCTTGAACATCGGTCGAGCTTTCCGTTCGCATTGACTTACCATGGGTT
TGGAAGGTACCGCGGGAATTTTCTATCAACGAGTTCTTTACGCGATGATA
TGGTAGAGCTCTGGCAACTTGGGAAGAGCGTGGAGGAAAGCGTCAAGTAC
GGGTATGTACCAAGTTATCTGATACCAATGCAGAAGATTTCTGATTTACT
TGGGTGTCACAACCAAGGGACATATGTGAATGGGGAGTGTATCACGACGA
ACGGGATCAAATTTGATTCAGCGGATAGGCACGAGAATAATGAGAAGACG
TTGCCCGGGCATCAACCTTCCGATCGAAAGGGGAGCGCGTGA

protein sequence of Gcaud1713.t1

>Gcaud1713.t1 ID=Gcaud1713.t1|Name=Gcaud1713.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=614bp
MRATQSSVRAFCVVAFDPDPLMAKPLNNIRSRKATKTAHFDVFTQLVPAS
SNGTEAVSFRAPNSIAEVGEPIDVRSFALKEFIDGVTYPWEESGNDVSKM
NLAKGNGNLGTVVVRFNVLPYPEVYWYLELLEALDPKGVMCKKIDRLILN
FERIDLDKNPQTSDLEDRDAVRDWDHIVSPAPSAKLDPNNGFQGIMNLAE
EISNLESCRTMVHVFDQSGNRVYPPVLSERQVYYAILAGQPTFDERVGAQ
TETWMTAVPQDRLTIFTNLPRNEDELKAARGRQVAVVQPNRPEMELRLSL
MQSWSHLVRVRESWDRAMKDNPDIKWLALVDDDTFVFPGGVREYLTMFDH
RMKFWGGSGEQARIDNGDSGSFARWLRNASKQFGGPHCYMQNEDVPKNLQ
GEHVEYSVSKVLNGRKVMRKVSHMCGDAFCSIGCPAVPQGAAIFLSRALV
EALRPHVEQCELDTKELCKNCGSQRLYMCVNRYAGPARTLLMRGVCRAPW
KLEHRSSFPFALTYHGFGRYRGNFLSTSSLRDDMVELWQLGKSVEESVKY
GYVPSYLIPMQKISDLLGCHNQGTYVNGECITTNGIKFDSADRHENNEKT
LPGHQPSDRKGSA*

mRNA from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1713.t1 ID=Gcaud1713.t1|Name=Gcaud1713.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+ (Gracilaria caudata M_176_S67 male)
ATGCGCGCAACGCAGAGTTCTGTTCGAGCGTTTTGTGTCGTTGCATTTGA
TCCAGATCCATTAATGGCGAAGCCCTTGAACAACATCAGATCCCGGAAGG
CCACGAAAACGGCACACTTTGATGTCTTCACTCAGCTGGTGCCTGCCTCT
TCGAATGGCACGGAAGCCGTGTCTTTTCGAGCTCCAAACTCAATTGCAGA
AGTCGGGGAACCCATTGACGTTCGCAGTTTCGCGCTCAAAGAGTTTATCG
ATGGTGTCACATATCCATGGGAGGAAAGCGGCAATGATGTTTCCAAGATG
AACCTTGCCAAAGGAAATGGCAATCTTGGCACTGTTGTGGTGCGCTTCAA
CGTTTTACCTTATCCGGAAGTGTACTGGTATCTGGAATTACTTGAAGCAT
TGGATCCTAAGGGTGTTATGTGCAAAAAAATTGATCGTCTCATACTCAAC
TTCGAACGAATTGACCTTGACAAGAATCCCCAGACATCAGACCTAGAAGA
CCGCGATGCAGTCCGAGATTGGGATCATATCGTATCACCGGCACCCTCTG
CAAAGCTAGATCCTAATAACGGCTTCCAAGGCATTATGAATCTGGCCGAA
GAAATCAGCAATCTGGAAAGCTGTCGCACTATGGTTCACGTATTTGACCA
AAGCGGAAACAGAGTTTATCCACCTGTCTTGTCTGAGAGACAGGTATATT
ATGCCATTTTGGCCGGACAGCCAACTTTTGATGAGAGAGTGGGGGCACAG
ACTGAGACTTGGATGACGGCTGTTCCCCAGGACAGATTAACCATTTTTAC
AAACCTTCCTAGGAATGAGGATGAACTGAAAGCCGCTCGTGGGCGGCAAG
TTGCAGTTGTTCAGCCGAATAGGCCTGAAATGGAACTACGATTGTCTTTA
ATGCAGTCATGGAGTCACTTGGTAAGAGTTCGCGAAAGCTGGGATCGTGC
AATGAAAGATAATCCTGACATCAAATGGCTTGCGCTCGTAGACGATGATA
CGTTTGTTTTCCCTGGGGGAGTAAGAGAATATCTCACAATGTTCGATCAT
CGCATGAAATTTTGGGGGGGGTCTGGTGAACAAGCGCGCATAGATAATGG
TGACAGCGGAAGTTTTGCGCGCTGGCTTCGCAATGCGAGCAAACAATTCG
GCGGTCCTCACTGCTACATGCAAAATGAAGACGTGCCGAAGAACCTTCAA
GGGGAACATGTAGAATATAGCGTGAGCAAGGTGCTGAACGGTCGGAAAGT
GATGCGAAAAGTATCGCATATGTGTGGAGATGCATTCTGCAGCATTGGAT
GTCCGGCGGTACCACAGGGAGCAGCTATATTTTTATCAAGGGCCCTTGTA
GAAGCGTTGCGGCCGCATGTGGAACAGTGTGAGTTGGATACGAAGGAACT
ATGCAAGAACTGCGGATCACAACGTCTCTACATGTGTGTGAATCGCTATG
CAGGTCCAGCTCGAACACTGCTAATGAGGGGGGTTTGTAGAGCTCCATGG
AAGCTTGAACATCGGTCGAGCTTTCCGTTCGCATTGACTTACCATGGGTT
TGGAAGGTACCGCGGGAATTTTCTATCAACGAGTTCTTTACGCGATGATA
TGGTAGAGCTCTGGCAACTTGGGAAGAGCGTGGAGGAAAGCGTCAAGTAC
GGGTATGTACCAAGTTATCTGATACCAATGCAGAAGATTTCTGATTTACT
TGGGTGTCACAACCAAGGGACATATGTGAATGGGGAGTGTATCACGACGA
ACGGGATCAAATTTGATTCAGCGGATAGGCACGAGAATAATGAGAAGACG
TTGCCCGGGCATCAACCTTCCGATCGAAAGGGGAGCGCGTGA

Coding sequence (CDS) from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+

>Gcaud1713.t1 ID=Gcaud1713.t1|Name=Gcaud1713.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1842bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:11006..12847+ (Gracilaria caudata M_176_S67 male)
ATGCGCGCAACGCAGAGTTCTGTTCGAGCGTTTTGTGTCGTTGCATTTGA
TCCAGATCCATTAATGGCGAAGCCCTTGAACAACATCAGATCCCGGAAGG
CCACGAAAACGGCACACTTTGATGTCTTCACTCAGCTGGTGCCTGCCTCT
TCGAATGGCACGGAAGCCGTGTCTTTTCGAGCTCCAAACTCAATTGCAGA
AGTCGGGGAACCCATTGACGTTCGCAGTTTCGCGCTCAAAGAGTTTATCG
ATGGTGTCACATATCCATGGGAGGAAAGCGGCAATGATGTTTCCAAGATG
AACCTTGCCAAAGGAAATGGCAATCTTGGCACTGTTGTGGTGCGCTTCAA
CGTTTTACCTTATCCGGAAGTGTACTGGTATCTGGAATTACTTGAAGCAT
TGGATCCTAAGGGTGTTATGTGCAAAAAAATTGATCGTCTCATACTCAAC
TTCGAACGAATTGACCTTGACAAGAATCCCCAGACATCAGACCTAGAAGA
CCGCGATGCAGTCCGAGATTGGGATCATATCGTATCACCGGCACCCTCTG
CAAAGCTAGATCCTAATAACGGCTTCCAAGGCATTATGAATCTGGCCGAA
GAAATCAGCAATCTGGAAAGCTGTCGCACTATGGTTCACGTATTTGACCA
AAGCGGAAACAGAGTTTATCCACCTGTCTTGTCTGAGAGACAGGTATATT
ATGCCATTTTGGCCGGACAGCCAACTTTTGATGAGAGAGTGGGGGCACAG
ACTGAGACTTGGATGACGGCTGTTCCCCAGGACAGATTAACCATTTTTAC
AAACCTTCCTAGGAATGAGGATGAACTGAAAGCCGCTCGTGGGCGGCAAG
TTGCAGTTGTTCAGCCGAATAGGCCTGAAATGGAACTACGATTGTCTTTA
ATGCAGTCATGGAGTCACTTGGTAAGAGTTCGCGAAAGCTGGGATCGTGC
AATGAAAGATAATCCTGACATCAAATGGCTTGCGCTCGTAGACGATGATA
CGTTTGTTTTCCCTGGGGGAGTAAGAGAATATCTCACAATGTTCGATCAT
CGCATGAAATTTTGGGGGGGGTCTGGTGAACAAGCGCGCATAGATAATGG
TGACAGCGGAAGTTTTGCGCGCTGGCTTCGCAATGCGAGCAAACAATTCG
GCGGTCCTCACTGCTACATGCAAAATGAAGACGTGCCGAAGAACCTTCAA
GGGGAACATGTAGAATATAGCGTGAGCAAGGTGCTGAACGGTCGGAAAGT
GATGCGAAAAGTATCGCATATGTGTGGAGATGCATTCTGCAGCATTGGAT
GTCCGGCGGTACCACAGGGAGCAGCTATATTTTTATCAAGGGCCCTTGTA
GAAGCGTTGCGGCCGCATGTGGAACAGTGTGAGTTGGATACGAAGGAACT
ATGCAAGAACTGCGGATCACAACGTCTCTACATGTGTGTGAATCGCTATG
CAGGTCCAGCTCGAACACTGCTAATGAGGGGGGTTTGTAGAGCTCCATGG
AAGCTTGAACATCGGTCGAGCTTTCCGTTCGCATTGACTTACCATGGGTT
TGGAAGGTACCGCGGGAATTTTCTATCAACGAGTTCTTTACGCGATGATA
TGGTAGAGCTCTGGCAACTTGGGAAGAGCGTGGAGGAAAGCGTCAAGTAC
GGGTATGTACCAAGTTATCTGATACCAATGCAGAAGATTTCTGATTTACT
TGGGTGTCACAACCAAGGGACATATGTGAATGGGGAGTGTATCACGACGA
ACGGGATCAAATTTGATTCAGCGGATAGGCACGAGAATAATGAGAAGACG
TTGCCCGGGCATCAACCTTCCGATCGAAAGGGGAGCGCGTGA