Gcaud3288.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3288.t1
Unique Name	Gcaud3288.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	252

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_84_length_54915_cov_4.457829	contig	NODE_84_length_54915_cov_4.457829:26409..27164 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702974.1
Preferred name	UQCRFS1
PFAMs	Rieske,UCR_TM,Ubiq-Cytc-red_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00411,ko:K00413
KEGG Pathway	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00151,M00152
GOs	GO:0001932,GO:0001933,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005751,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019220,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031401,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034641,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045275,GO:0045277,GO:0045333,GO:0045936,GO:0045937,GO:0046034,GO:0046483,GO:0046677,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0055086,GO:0055114,GO:0060255,GO:0061062,GO:0061063,GO:0065007,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0080090,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204,GO:2000026
Evalue	5.39e-86
EggNOG OGs	COG0723@1\|root,KOG1671@2759\|Eukaryota
EC	1.10.2.2
Description	oxidoreductase activity, acting on diphenols and related substances as donors
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3288	Gcaud3288	Gracilaria caudata M_176_S67 male	gene	NODE_84_length_54915_cov_4.457829 26409..27164 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3288.t1.start1	Gcaud3288.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_84_length_54915_cov_4.457829 26409..26411 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3288.t1.CDS1	Gcaud3288.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_84_length_54915_cov_4.457829 26409..27164 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3288.t1.exon1	Gcaud3288.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_84_length_54915_cov_4.457829 26409..27164 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3288.t1.stop1	Gcaud3288.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_84_length_54915_cov_4.457829 27162..27164 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3288.t1	Gcaud3288.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_84_length_54915_cov_4.457829 26409..27164 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+
coding sequence from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+

mRNA sequence

>Gcaud3288.t1 ID=Gcaud3288.t1|Name=Gcaud3288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=252bp
MSMLSRFGAVARRLAANPSSLHRNVPSMGLRALATTPPTVANAGTLGAQT
ASSELVAPRGPGALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFI
AASAVRVLILKLIYTMSASADVLAKGSVEVDLTAIPLGESATIKWRGKPV
FIRHRTEGEIAKAAEDDNTELRHPEADIDRVQKPEWLVVLGVCTHLGCVP
IANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIIL
G*

spliced messenger RNA

>Gcaud3288.t1 ID=Gcaud3288.t1|Name=Gcaud3288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATGCTTTCCCGTTTCGGCGCGGTTGCGCGTCGACTAGCCGCAAA
TCCATCATCGCTGCATCGAAACGTGCCGTCAATGGGTCTTCGCGCCCTCG
CCACTACCCCCCCAACCGTTGCCAATGCGGGCACGCTAGGCGCGCAGACA
GCCTCCTCTGAACTCGTTGCGCCGCGCGGACCTGGCGCTCTACCCGTGGG
TTACATTGATGATTACCATAATCATCCGCATCGCTTCATGCCCGGCGATC
CGACGAAGCGTGCTTTCACGTATATGGTGCTTGGAACTACAAAGTTCATT
GCCGCTTCTGCGGTGCGCGTTCTCATTCTGAAGTTGATTTACACCATGTC
CGCTTCGGCTGATGTGCTGGCGAAAGGTTCAGTCGAAGTGGACCTTACCG
CGATTCCGCTCGGGGAATCTGCTACGATTAAGTGGCGAGGAAAGCCCGTC
TTTATTCGTCACAGAACAGAAGGCGAGATTGCTAAGGCAGCAGAGGATGA
TAACACGGAATTGAGGCATCCTGAAGCAGATATAGACCGTGTGCAGAAGC
CAGAGTGGCTTGTTGTGTTGGGTGTGTGCACTCACCTTGGTTGCGTCCCG
ATTGCGAATGCAGGTGACTATCAAGGTTGGTTCTGCCCGTGTCATGGCTC
TCATTATGATCTCTCGGGTCGCATCCGTAAAGGACCTGCACCCCTTAACT
TAGACGTTCCAACATACAGATTCGAGGAGGATGACACCAAGATCATTTTG
GGGTAG

protein sequence of Gcaud3288.t1

>Gcaud3288.t1 ID=Gcaud3288.t1|Name=Gcaud3288.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=252bp
MSMLSRFGAVARRLAANPSSLHRNVPSMGLRALATTPPTVANAGTLGAQT
ASSELVAPRGPGALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFI
AASAVRVLILKLIYTMSASADVLAKGSVEVDLTAIPLGESATIKWRGKPV
FIRHRTEGEIAKAAEDDNTELRHPEADIDRVQKPEWLVVLGVCTHLGCVP
IANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIIL
G*

mRNA from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3288.t1 ID=Gcaud3288.t1|Name=Gcaud3288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+ (Gracilaria caudata M_176_S67 male)
ATGTCCATGCTTTCCCGTTTCGGCGCGGTTGCGCGTCGACTAGCCGCAAA
TCCATCATCGCTGCATCGAAACGTGCCGTCAATGGGTCTTCGCGCCCTCG
CCACTACCCCCCCAACCGTTGCCAATGCGGGCACGCTAGGCGCGCAGACA
GCCTCCTCTGAACTCGTTGCGCCGCGCGGACCTGGCGCTCTACCCGTGGG
TTACATTGATGATTACCATAATCATCCGCATCGCTTCATGCCCGGCGATC
CGACGAAGCGTGCTTTCACGTATATGGTGCTTGGAACTACAAAGTTCATT
GCCGCTTCTGCGGTGCGCGTTCTCATTCTGAAGTTGATTTACACCATGTC
CGCTTCGGCTGATGTGCTGGCGAAAGGTTCAGTCGAAGTGGACCTTACCG
CGATTCCGCTCGGGGAATCTGCTACGATTAAGTGGCGAGGAAAGCCCGTC
TTTATTCGTCACAGAACAGAAGGCGAGATTGCTAAGGCAGCAGAGGATGA
TAACACGGAATTGAGGCATCCTGAAGCAGATATAGACCGTGTGCAGAAGC
CAGAGTGGCTTGTTGTGTTGGGTGTGTGCACTCACCTTGGTTGCGTCCCG
ATTGCGAATGCAGGTGACTATCAAGGTTGGTTCTGCCCGTGTCATGGCTC
TCATTATGATCTCTCGGGTCGCATCCGTAAAGGACCTGCACCCCTTAACT
TAGACGTTCCAACATACAGATTCGAGGAGGATGACACCAAGATCATTTTG
GGGTAG

Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+

>Gcaud3288.t1 ID=Gcaud3288.t1|Name=Gcaud3288.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=756bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:26409..27164+ (Gracilaria caudata M_176_S67 male)
ATGTCCATGCTTTCCCGTTTCGGCGCGGTTGCGCGTCGACTAGCCGCAAA
TCCATCATCGCTGCATCGAAACGTGCCGTCAATGGGTCTTCGCGCCCTCG
CCACTACCCCCCCAACCGTTGCCAATGCGGGCACGCTAGGCGCGCAGACA
GCCTCCTCTGAACTCGTTGCGCCGCGCGGACCTGGCGCTCTACCCGTGGG
TTACATTGATGATTACCATAATCATCCGCATCGCTTCATGCCCGGCGATC
CGACGAAGCGTGCTTTCACGTATATGGTGCTTGGAACTACAAAGTTCATT
GCCGCTTCTGCGGTGCGCGTTCTCATTCTGAAGTTGATTTACACCATGTC
CGCTTCGGCTGATGTGCTGGCGAAAGGTTCAGTCGAAGTGGACCTTACCG
CGATTCCGCTCGGGGAATCTGCTACGATTAAGTGGCGAGGAAAGCCCGTC
TTTATTCGTCACAGAACAGAAGGCGAGATTGCTAAGGCAGCAGAGGATGA
TAACACGGAATTGAGGCATCCTGAAGCAGATATAGACCGTGTGCAGAAGC
CAGAGTGGCTTGTTGTGTTGGGTGTGTGCACTCACCTTGGTTGCGTCCCG
ATTGCGAATGCAGGTGACTATCAAGGTTGGTTCTGCCCGTGTCATGGCTC
TCATTATGATCTCTCGGGTCGCATCCGTAAAGGACCTGCACCCCTTAACT
TAGACGTTCCAACATACAGATTCGAGGAGGATGACACCAAGATCATTTTG
GGGTAG